PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000274456	[[118604386, 118604602], [118728510, 118729089]]	[[118604601, 118604602], [118728510, 118729076]]
ENST00000388882	[[118604448, 118604602], [118651879, 118651997], [118728510, 118728779]]	[[118728575, 118728779]]
ENST00000513374	[[118668869, 118669326], [118728510, 118729438]]	[[118669259, 118669326], [118728510, 118729076]]
ENST00000504771	[[118690008, 118691816], [118728510, 118735383]]	[[118691785, 118691816], [118728510, 118729076]]
ENST00000503646	[[118690467, 118691087], [118691717, 118691816], [118728510, 118730293]]	[[118691785, 118691816], [118728510, 118729076]]
ENST00000504642	[[118691007, 118691087], [118728510, 118729141]]	[[118691050, 118691087], [118728510, 118729076]]
ENST00000415806	[[118691729, 118691816], [118727059, 118727178], [118728510, 118730294]]	[[118691785, 118691816], [118727059, 118727148]]
NM_001077654	[[118604386, 118604602], [118728510, 118730299]]	[[118604601, 118604602], [118728510, 118729076]]
NM_001286815	[[118604386, 118604602], [118651879, 118651997], [118728510, 118730299]]	[[118728575, 118729076]]
NM_001286817	[[118604386, 118604602], [118651875, 118651997], [118728510, 118730299]]	[[118728575, 118729076]]
NM_001286814	[[118668869, 118669326], [118728510, 118730299]]	[[118669259, 118669326], [118728510, 118729076]]
NM_001286813	[[118690467, 118691087], [118691717, 118691816], [118728510, 118730299]]	[[118691785, 118691816], [118728510, 118729076]]
NM_014350	[[118691514, 118691816], [118728510, 118730299]]	[[118691785, 118691816], [118728510, 118729076]]

Promoter

Chrom	Start	End	Description
chr5	118604385	118604394	CAGE_peak_12_at_TNFAIP8_5end
chr5	118604403	118604434	CAGE_peak_4_at_TNFAIP8_5end
chr5	118604439	118604502	CAGE_peak_1_at_TNFAIP8_5end
chr5	118604518	118604529	CAGE_peak_11_at_TNFAIP8_5end
chr5	118668846	118668885	CAGE_peak_8_at_TNFAIP8_5end
chr5	118668891	118668933	CAGE_peak_5_at_TNFAIP8_5end
chr5	118668955	118668964	CAGE_peak_19_at_TNFAIP8_5end
chr5	118669079	118669097	CAGE_peak_13_at_TNFAIP8_5end
chr5	118669265	118669294	CAGE_peak_10_at_TNFAIP8_5end
chr5	118689607	118689632	CAGE_peak_32_at_TNFAIP8_5end
chr5	118690466	118690505	CAGE_peak_29_at_TNFAIP8_5end
chr5	118691143	118691149	CAGE_peak_36_at_TNFAIP8_5end
chr5	118691590	118691601	CAGE_peak_14_at_TNFAIP8_5end
chr5	118691623	118691640	CAGE_peak_6_at_TNFAIP8_5end
chr5	118691642	118691653	CAGE_peak_9_at_TNFAIP8_5end
chr5	118691664	118691675	CAGE_peak_7_at_TNFAIP8_5end
chr5	118691687	118691700	CAGE_peak_3_at_TNFAIP8_5end
chr5	118691706	118691722	CAGE_peak_2_at_TNFAIP8_5end
chr5	118728649	118728666	CAGE_peak_17_at_TNFAIP8_5end
chr5	118728830	118728846	CAGE_peak_15_at_TNFAIP8_5end
chr5	118728908	118728920	CAGE_peak_23_at_TNFAIP8_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I119283	119283501	119291389	1.59	[{'connected_gene': 'FAM170A', 'score': 4.39}, {'connected_gene': 'TNFAIP8', 'score': 2.12}, {'connected_gene': 'DMXL1', 'score': 1.26}, {'connected_gene': 'GC05P119298', 'score': 0.39}]
chr5	GH05I119425	119425609	119428043	0.69	[{'connected_gene': 'HSD17B4', 'score': 20.22}, {'connected_gene': 'LOC105379143', 'score': 10.15}, {'connected_gene': 'DMXL1', 'score': 10.15}, {'connected_gene': 'TNFAIP8', 'score': 7.93}, {'connected_gene': 'GC05P119446', 'score': 0.37}, {'connected_gene': 'LOC102723444', 'score': 0.19}]
chr5	GH05I119396	119396401	119396600	0.58	[{'connected_gene': 'DTWD2', 'score': 10.81}, {'connected_gene': 'DMXL1', 'score': 9.93}, {'connected_gene': 'LOC105379143', 'score': 9.93}, {'connected_gene': 'TNFAIP8', 'score': 6.56}, {'connected_gene': 'LOC102723444', 'score': 0.26}, {'connected_gene': 'GC05P119446', 'score': 0.25}]
chr5	GH05I119394	119394796	119395942	0.85	[{'connected_gene': 'DTWD2', 'score': 10.81}, {'connected_gene': 'LOC105379143', 'score': 9.93}, {'connected_gene': 'DMXL1', 'score': 9.93}, {'connected_gene': 'TNFAIP8', 'score': 9.77}, {'connected_gene': 'HSD17B4', 'score': 5.8}, {'connected_gene': 'LOC102723444', 'score': 0.28}, {'connected_gene': 'GC05P119446', 'score': 0.23}]
chr5	GH05I119393	119393198	119394451	0.63	[{'connected_gene': 'DTWD2', 'score': 10.81}, {'connected_gene': 'LOC105379143', 'score': 10.37}, {'connected_gene': 'DMXL1', 'score': 10.37}, {'connected_gene': 'TNFAIP8', 'score': 7.12}, {'connected_gene': 'LOC102723444', 'score': 0.28}, {'connected_gene': 'GC05P119446', 'score': 0.23}]
chr5	GH05I119267	119267486	119279781	2.79	[{'connected_gene': 'TNFAIP8', 'score': 574.73}, {'connected_gene': 'DTWD2', 'score': 10.66}, {'connected_gene': 'DMXL1', 'score': 7.01}, {'connected_gene': 'GC05P119298', 'score': 0.34}]
chr5	GH05I119410	119410720	119412815	1.57	[{'connected_gene': 'TNFAIP8', 'score': 44.7}, {'connected_gene': 'DTWD2', 'score': 11.44}, {'connected_gene': 'RNU6-373P', 'score': 11.28}, {'connected_gene': 'ENSG00000250678', 'score': 11.28}, {'connected_gene': 'HSD17B4', 'score': 11.21}, {'connected_gene': 'FAM170A', 'score': 9.74}, {'connected_gene': 'DMXL1', 'score': 1.27}, {'connected_gene': 'GC05P119446', 'score': 0.29}, {'connected_gene': 'LOC102723444', 'score': 0.22}]
chr5	GH05I119406	119406676	119407005	0.23	[{'connected_gene': 'TNFAIP8', 'score': 22.38}, {'connected_gene': 'DTWD2', 'score': 10.96}, {'connected_gene': 'LOC105379143', 'score': 9.87}, {'connected_gene': 'DMXL1', 'score': 9.87}, {'connected_gene': 'GC05P119446', 'score': 0.28}, {'connected_gene': 'LOC102723444', 'score': 0.23}]
chr5	GH05I119397	119397002	119399999	1.59	[{'connected_gene': 'TNFAIP8', 'score': 45.22}, {'connected_gene': 'DMXL1', 'score': 11.49}, {'connected_gene': 'DTWD2', 'score': 10.81}, {'connected_gene': 'LOC105379143', 'score': 9.93}, {'connected_gene': 'LOC102723444', 'score': 0.26}, {'connected_gene': 'GC05P119446', 'score': 0.25}]
chr5	GH05I119388	119388754	119390424	1.25	[{'connected_gene': 'TNFAIP8', 'score': 50.56}, {'connected_gene': 'DMXL1', 'score': 12.25}, {'connected_gene': 'LOC105379143', 'score': 10.37}, {'connected_gene': 'LOC102723444', 'score': 0.29}, {'connected_gene': 'GC05P119446', 'score': 0.22}]
chr5	GH05I119317	119317976	119345116	2.3	[{'connected_gene': 'TNFAIP8', 'score': 608.15}, {'connected_gene': 'DMXL1', 'score': 39.18}, {'connected_gene': 'LAMTOR3P2', 'score': 10.9}, {'connected_gene': 'LOC105379143', 'score': 10.27}, {'connected_gene': 'FAM170A', 'score': 5.79}, {'connected_gene': 'HSD17B4', 'score': 5.11}, {'connected_gene': 'ENSG00000249426', 'score': 4.41}, {'connected_gene': 'GC05P119341', 'score': 0.39}, {'connected_gene': 'GC05M119307', 'score': 0.34}, {'connected_gene': 'RN7SL174P', 'score': 0.34}]
chr5	GH05I119030	119030316	119033663	1.31	[{'connected_gene': 'TNFAIP8', 'score': 21.8}, {'connected_gene': 'LOC105379143', 'score': 19.89}, {'connected_gene': 'DTWD2', 'score': 18.83}, {'connected_gene': 'DMXL1', 'score': 6.96}, {'connected_gene': 'ENSG00000250928', 'score': 0.34}]
chr5	GH05I119365	119365107	119371869	1.19	[{'connected_gene': 'TNFAIP8', 'score': 13.33}, {'connected_gene': 'LOC105379143', 'score': 10.54}, {'connected_gene': 'DMXL1', 'score': 10.54}, {'connected_gene': 'HSD17B4', 'score': 6.27}, {'connected_gene': 'LOC102723444', 'score': 0.39}, {'connected_gene': 'GC05P119446', 'score': 0.18}]
chr5	GH05I119363	119363031	119364747	0.82	[{'connected_gene': 'TNFAIP8', 'score': 12.88}, {'connected_gene': 'LOC105379143', 'score': 10.26}, {'connected_gene': 'DMXL1', 'score': 10.25}, {'connected_gene': 'HSD17B4', 'score': 6.2}, {'connected_gene': 'LOC102723444', 'score': 0.44}, {'connected_gene': 'GC05P119446', 'score': 0.18}]
chr5	GH05I119352	119352070	119362634	2.33	[{'connected_gene': 'TNFAIP8', 'score': 563.01}, {'connected_gene': 'LOC102723444', 'score': 550.77}, {'connected_gene': 'LOC105379143', 'score': 10.26}, {'connected_gene': 'DMXL1', 'score': 10.26}, {'connected_gene': 'HSD17B4', 'score': 5.9}, {'connected_gene': 'GC05P119446', 'score': 0.17}]
chr5	GH05I119377	119377880	119379344	0.4	[{'connected_gene': 'TNFAIP8', 'score': 11.12}, {'connected_gene': 'LOC102723444', 'score': 0.34}, {'connected_gene': 'GC05P119446', 'score': 0.2}]
chr5	GH05I119255	119255658	119256491	0.8	[{'connected_gene': 'TNFAIP8', 'score': 0.39}, {'connected_gene': 'PIR33377', 'score': 0.21}]
chr5	GH05I119280	119280096	119281125	0.38	[{'connected_gene': 'TNFAIP8', 'score': 0.39}, {'connected_gene': 'GC05P119298', 'score': 0.37}]
chr5	GH05I119257	119257177	119257508	0.22	[{'connected_gene': 'TNFAIP8', 'score': 0.39}, {'connected_gene': 'PIR33377', 'score': 0.21}]
chr5	GH05I119261	119261433	119261720	0.23	[{'connected_gene': 'TNFAIP8', 'score': 0.44}, {'connected_gene': 'PIR33377', 'score': 0.2}]
chr5	GH05I119281	119281566	119283076	0.31	[{'connected_gene': 'TNFAIP8', 'score': 0.39}, {'connected_gene': 'GC05P119298', 'score': 0.37}]
chr5	GH05I119299	119299146	119311358	1.47	[{'connected_gene': 'RN7SL174P', 'score': 550.77}, {'connected_gene': 'GC05M119307', 'score': 550.77}, {'connected_gene': 'TNFAIP8', 'score': 5.26}, {'connected_gene': 'GC05P119298', 'score': 0.44}]
chr5	GH05I119311	119311768	119317259	1.18	[{'connected_gene': 'LOC105379143', 'score': 10.2}, {'connected_gene': 'DMXL1', 'score': 10.2}, {'connected_gene': 'FAM170A', 'score': 5.56}, {'connected_gene': 'TNFAIP8', 'score': 5.5}, {'connected_gene': 'HSD17B4', 'score': 4.34}, {'connected_gene': 'GC05M119307', 'score': 0.44}, {'connected_gene': 'RN7SL174P', 'score': 0.44}, {'connected_gene': 'GC05P119341', 'score': 0.31}]
chr5	GH05I119386	119386601	119387200	0.89	[{'connected_gene': 'LOC105379143', 'score': 10.37}, {'connected_gene': 'DMXL1', 'score': 10.36}, {'connected_gene': 'FAM170A', 'score': 7.4}, {'connected_gene': 'LOC102723444', 'score': 0.29}, {'connected_gene': 'GC05P119446', 'score': 0.22}, {'connected_gene': 'TNFAIP8', 'score': 0.13}]
chr5	GH05I119387	119387671	119388600	0.97	[{'connected_gene': 'LOC105379143', 'score': 10.37}, {'connected_gene': 'DMXL1', 'score': 10.37}, {'connected_gene': 'TNFAIP8', 'score': 6.33}, {'connected_gene': 'FAM170A', 'score': 4.93}, {'connected_gene': 'LOC102723444', 'score': 0.29}, {'connected_gene': 'GC05P119446', 'score': 0.22}]
chr5	GH05I119347	119347523	119348750	0.46	[{'connected_gene': 'LOC105379143', 'score': 10.56}, {'connected_gene': 'DMXL1', 'score': 10.56}, {'connected_gene': 'TNFAIP8', 'score': 5.75}, {'connected_gene': 'HSD17B4', 'score': 5.09}, {'connected_gene': 'GC05P119341', 'score': 0.44}, {'connected_gene': 'LOC102723444', 'score': 0.44}]
chr5	GH05I119372	119372800	119375650	0.62	[{'connected_gene': 'LOC105379143', 'score': 10.3}, {'connected_gene': 'DMXL1', 'score': 10.3}, {'connected_gene': 'TNFAIP8', 'score': 6.17}, {'connected_gene': 'LOC102723444', 'score': 0.37}, {'connected_gene': 'GC05P119446', 'score': 0.19}]
chr5	GH05I119384	119384201	119384400	0.4	[{'connected_gene': 'LOC105379143', 'score': 10.37}, {'connected_gene': 'DMXL1', 'score': 10.36}, {'connected_gene': 'LOC102723444', 'score': 0.31}, {'connected_gene': 'GC05P119446', 'score': 0.21}, {'connected_gene': 'TNFAIP8', 'score': 0.13}]
chr5	GH05I119390	119390601	119390800	0.58	[{'connected_gene': 'LOC105379143', 'score': 10.37}, {'connected_gene': 'DMXL1', 'score': 10.37}, {'connected_gene': 'LOC102723444', 'score': 0.29}, {'connected_gene': 'GC05P119446', 'score': 0.22}, {'connected_gene': 'TNFAIP8', 'score': 0.13}]
chr5	GH05I119385	119385201	119385400	0.69	[{'connected_gene': 'LOC105379143', 'score': 10.37}, {'connected_gene': 'DMXL1', 'score': 10.36}, {'connected_gene': 'LOC102723444', 'score': 0.31}, {'connected_gene': 'GC05P119446', 'score': 0.21}, {'connected_gene': 'TNFAIP8', 'score': 0.13}]
chr5	GH05I119346	119346001	119346755	0.69	[{'connected_gene': 'LOC105379143', 'score': 10.56}, {'connected_gene': 'DMXL1', 'score': 10.56}, {'connected_gene': 'GC05P119341', 'score': 0.77}, {'connected_gene': 'LOC102723444', 'score': 0.44}, {'connected_gene': 'TNFAIP8', 'score': 0.18}]
chr5	GH05I119379	119379888	119381722	0.65	[{'connected_gene': 'LOC102723444', 'score': 0.31}, {'connected_gene': 'GC05P119446', 'score': 0.21}, {'connected_gene': 'TNFAIP8', 'score': 0.14}]
chr5	GH05I119382	119382306	119382495	0.51	[{'connected_gene': 'LOC102723444', 'score': 0.31}, {'connected_gene': 'GC05P119446', 'score': 0.21}, {'connected_gene': 'TNFAIP8', 'score': 0.14}]
chr5	GH05I119291	119291601	119291800	0.4	[{'connected_gene': 'GC05P119298', 'score': 0.44}, {'connected_gene': 'TNFAIP8', 'score': 0.34}]
chr5	GH05I119293	119292801	119293000	0.51	[{'connected_gene': 'GC05P119298', 'score': 0.44}, {'connected_gene': 'TNFAIP8', 'score': 0.34}]
chr5	GH05I119292	119292001	119292200	0.4	[{'connected_gene': 'GC05P119298', 'score': 0.44}, {'connected_gene': 'TNFAIP8', 'score': 0.34}]
chr5	GH05I119345	119345601	119345800	0.51	[{'connected_gene': 'GC05P119341', 'score': 0.77}, {'connected_gene': 'LOC102723444', 'score': 0.39}, {'connected_gene': 'TNFAIP8', 'score': 0.18}]