PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000548553	[[51317254, 51317863], [51318449, 51319319], [51323696, 51326293]]	[[51318821, 51319319], [51323696, 51323933]]
ENST00000550502	[[51317787, 51317863], [51318819, 51319319], [51323696, 51323738]]	[[51318821, 51319319], [51323696, 51323738]]
ENST00000332160	[[51318533, 51319319], [51323696, 51326300]]	[[51318821, 51319319], [51323696, 51323933]]
ENST00000547104	[[51318765, 51319319], [51323696, 51324074], [51325397, 51326290]]	[[51318821, 51319319], [51323696, 51323933]]
ENST00000546513	[[51318768, 51319319], [51323696, 51324575], [51325295, 51326288]]	[[51318821, 51319319], [51323696, 51323933]]
ENST00000550097	[[51318823, 51319319], [51323696, 51324205], [51325380, 51326221]]	[[51318823, 51319319], [51323696, 51323933]]
NM_014033	[[51318533, 51319319], [51323696, 51326300]]	[[51318821, 51319319], [51323696, 51323933]]

Promoter

Chrom	Start	End	Description
chr12	51317806	51317834	CAGE_peak_12_at_METTL7A_5end
chr12	51318389	51318399	CAGE_peak_8_at_METTL7A_5end
chr12	51318401	51318412	CAGE_peak_7_at_METTL7A_5end
chr12	51318431	51318459	CAGE_peak_3_at_METTL7A_5end
chr12	51318464	51318492	CAGE_peak_2_at_METTL7A_5end
chr12	51318499	51318511	CAGE_peak_5_at_METTL7A_5end
chr12	51318513	51318527	CAGE_peak_4_at_METTL7A_5end
chr12	51318790	51318817	CAGE_peak_1_at_METTL7A_5end
chr12	51323891	51323918	CAGE_peak_9_at_METTL7A_5end
chr12	51324072	51324075	CAGE_peak_6_at_METTL7A_5end
chr12	51324615	51324624	CAGE_peak_13_at_METTL7A_5end
chr12	51324660	51324671	CAGE_peak_10_at_METTL7A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I051004	51004311	51006972	0.92	[{'connected_gene': 'SLC11A2', 'score': 34.66}, {'connected_gene': 'CSRNP2', 'score': 9.24}, {'connected_gene': 'METTL7A', 'score': 4.94}, {'connected_gene': 'RNU7-39P', 'score': 0.44}, {'connected_gene': 'ENSG00000274797', 'score': 0.23}]
chr12	GH12I050929	50929887	50930908	0.31	[{'connected_gene': 'SLC11A2', 'score': 10.57}, {'connected_gene': 'RNU6-1273P', 'score': 10.52}, {'connected_gene': 'LETMD1', 'score': 10.24}, {'connected_gene': 'ENSG00000274156', 'score': 0.44}, {'connected_gene': 'METTL7A', 'score': 0.44}]
chr12	GH12I050921	50921999	50928985	2.44	[{'connected_gene': 'METTL7A', 'score': 550.77}, {'connected_gene': 'SMARCD1', 'score': 39.87}, {'connected_gene': 'SLC11A2', 'score': 30.96}, {'connected_gene': 'HNRNPA3P10', 'score': 24.17}, {'connected_gene': 'LIMA1', 'score': 20.24}, {'connected_gene': 'ATF1', 'score': 19.17}, {'connected_gene': 'LETMD1', 'score': 16.33}, {'connected_gene': 'TFCP2', 'score': 12.78}, {'connected_gene': 'ENSG00000257298', 'score': 12.05}, {'connected_gene': 'RNU6-1273P', 'score': 10.52}, {'connected_gene': 'CERS5', 'score': 7.07}, {'connected_gene': 'LARP4', 'score': 5.78}, {'connected_gene': 'PHBP19', 'score': 4.72}, {'connected_gene': 'DIP2B', 'score': 1.48}, {'connected_gene': 'ENSG00000274156', 'score': 0.44}]
chr12	GH12I051398	51398024	51402500	1.02	[{'connected_gene': 'GALNT6', 'score': 11.21}, {'connected_gene': 'HIGD1C', 'score': 10.67}, {'connected_gene': 'SCN8A', 'score': 7.82}, {'connected_gene': 'SLC4A8', 'score': 5.65}, {'connected_gene': 'METTL7A', 'score': 3.6}, {'connected_gene': 'ENSG00000271065', 'score': 0.34}]
chr12	GH12I050930	50930991	50936130	1.63	[{'connected_gene': 'ENSG00000274156', 'score': 550.77}, {'connected_gene': 'SLC11A2', 'score': 42.73}, {'connected_gene': 'RNU6-1273P', 'score': 10.47}, {'connected_gene': 'CSRNP2', 'score': 6.94}, {'connected_gene': 'METTL7A', 'score': 4.83}]