PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000497864	[[52005441, 52005833], [52011886, 52012098], [52012274, 52012390], [52014408, 52014490]]	[[52005569, 52005833], [52011886, 52012098], [52012274, 52012390], [52014408, 52014490]]
ENST00000494478	[[52007699, 52007921], [52011886, 52012098], [52012274, 52012390], [52014408, 52014484]]	[[52007867, 52007921], [52011886, 52012098], [52012274, 52012390], [52014408, 52014484]]
ENST00000273596	[[52009083, 52009220], [52011886, 52012098], [52012274, 52012390], [52014408, 52014644], [52014851, 52015212]]	[[52009151, 52009220], [52011886, 52012098], [52012274, 52012390], [52014408, 52014644], [52014851, 52015034]]
ENST00000474575	[[52009117, 52009220], [52011886, 52012098], [52012274, 52013023]]	None
ENST00000491470	[[52009118, 52009220], [52011886, 52012098], [52014851, 52015211]]	[[52009151, 52009220], [52011886, 52012098], [52014851, 52014945]]
NM_015407	[[52009041, 52009220], [52011886, 52012098], [52012274, 52012390], [52014408, 52014644], [52014851, 52015216]]	[[52009151, 52009220], [52011886, 52012098], [52012274, 52012390], [52014408, 52014644], [52014851, 52015034]]

Promoter

Chrom	Start	End	Description
chr3	52007693	52007737	CAGE_peak_3_at_ABHD14A_5end
chr3	52009067	52009102	CAGE_peak_1_at_ABHD14A_5end
chr3	52009110	52009147	CAGE_peak_2_at_ABHD14A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I051980	51980789	51987619	2.27	[{'connected_gene': 'ABHD14B', 'score': 550.77}, {'connected_gene': 'ACY1', 'score': 550.77}, {'connected_gene': 'GPR62', 'score': 15.16}, {'connected_gene': 'PARP3', 'score': 7.59}, {'connected_gene': 'RPL29', 'score': 5.93}, {'connected_gene': 'ABHD14A-ACY1', 'score': 0.44}, {'connected_gene': 'ABHD14A', 'score': 0.39}]
chr3	GH03I052027	52027849	52036352	0.83	[{'connected_gene': 'NEK4', 'score': 10.03}, {'connected_gene': 'PARP3', 'score': 4.64}, {'connected_gene': 'ABHD14A', 'score': 4.6}, {'connected_gene': 'ITIH4', 'score': 4.23}, {'connected_gene': 'SPCS1', 'score': 3.95}, {'connected_gene': 'LOC105377088', 'score': 0.77}, {'connected_gene': 'GC03P052016', 'score': 0.37}]
chr3	GH03I051973	51973200	51977017	2.24	[{'connected_gene': 'PCBP4', 'score': 550.77}, {'connected_gene': 'ABHD14A-ACY1', 'score': 550.77}, {'connected_gene': 'ABHD14A', 'score': 550.77}, {'connected_gene': 'ENSG00000272762', 'score': 550.77}, {'connected_gene': 'PARP3', 'score': 7.64}, {'connected_gene': 'NT5DC2', 'score': 5.33}, {'connected_gene': 'ACY1', 'score': 0.44}, {'connected_gene': 'ABHD14B', 'score': 0.44}]
chr3	GH03I051966	51966064	51969836	2.02	[{'connected_gene': 'PCBP4', 'score': 550.44}, {'connected_gene': 'PARP3', 'score': 8.19}, {'connected_gene': 'GC03P051963', 'score': 0.77}, {'connected_gene': 'ABHD14A', 'score': 0.77}, {'connected_gene': 'ENSG00000272762', 'score': 0.44}, {'connected_gene': 'ABHD14B', 'score': 0.37}]
chr3	GH03I052108	52108038	52110936	1.21	[{'connected_gene': 'DUSP7', 'score': 12.9}, {'connected_gene': 'ABHD14B', 'score': 11.11}, {'connected_gene': 'PCBP4', 'score': 11.1}, {'connected_gene': 'ABHD14A', 'score': 11.1}, {'connected_gene': 'ABHD14A-ACY1', 'score': 11.1}, {'connected_gene': 'GPR62', 'score': 10.44}, {'connected_gene': 'WDR82', 'score': 9.64}, {'connected_gene': 'GLYCTK', 'score': 9.64}, {'connected_gene': 'MIR135A1', 'score': 9.63}, {'connected_gene': 'GLYCTK-AS1', 'score': 9.63}, {'connected_gene': 'POC1A', 'score': 5.0}, {'connected_gene': 'LINC00696', 'score': 0.26}]
chr3	GH03I051977	51977525	51977674	0.2	[{'connected_gene': 'ABHD14A-ACY1', 'score': 0.77}, {'connected_gene': 'ABHD14B', 'score': 0.44}, {'connected_gene': 'ACY1', 'score': 0.44}, {'connected_gene': 'ABHD14A', 'score': 0.44}]
chr3	GH03I051940	51940694	51943929	2.05	[{'connected_gene': 'PARP3', 'score': 559.63}, {'connected_gene': 'RRP9', 'score': 550.77}, {'connected_gene': 'ABHD14A', 'score': 10.22}, {'connected_gene': 'RPL29', 'score': 7.02}, {'connected_gene': 'ENSG00000280422', 'score': 0.39}]
chr3	GH03I051794	51794265	51794474	0.2	[{'connected_gene': 'GC03P051793', 'score': 550.77}, {'connected_gene': 'IQCF3', 'score': 11.34}, {'connected_gene': 'IQCF4', 'score': 11.34}, {'connected_gene': 'IQCF5', 'score': 10.34}, {'connected_gene': 'ABHD14A-ACY1', 'score': 9.64}, {'connected_gene': 'ABHD14B', 'score': 9.63}, {'connected_gene': 'PCBP4', 'score': 9.44}, {'connected_gene': 'ABHD14A', 'score': 9.44}, {'connected_gene': 'LOC105377087', 'score': 0.28}]