PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000343053	[[140149624, 140150063], [140150358, 140150522], [140150780, 140150880], [140151275, 140151506], [140157488, 140157674], [140158696, 140158809], [140160328, 140160431], [140160782, 140160878], [140161395, 140161538], [140161691, 140161798], [140166532, 140166674], [140166958, 140167067], [140167233, 140167998]]	[[140149961, 140150063], [140150358, 140150522], [140150780, 140150880], [140151275, 140151506], [140157488, 140157674], [140158696, 140158809], [140160328, 140160431], [140160782, 140160878], [140161395, 140161538], [140161691, 140161798], [140166532, 140166674], [140166958, 140167067], [140167233, 140167380]]
NM_015456	[[140149751, 140150063], [140150358, 140150522], [140150780, 140150880], [140151275, 140151506], [140157488, 140157674], [140158696, 140158809], [140160328, 140160431], [140160782, 140160878], [140161395, 140161538], [140161691, 140161798], [140166532, 140166674], [140166958, 140167067], [140167233, 140168000]]	[[140149817, 140150063], [140150358, 140150522], [140150780, 140150880], [140151275, 140151506], [140157488, 140157674], [140158696, 140158809], [140160328, 140160431], [140160782, 140160878], [140161395, 140161538], [140161691, 140161798], [140166532, 140166674], [140166958, 140167067], [140167233, 140167380]]

Promoter

Chrom	Start	End	Description
chr9	140149661	140149674	CAGE_peak_3_at_COBRA1_5end
chr9	140149730	140149826	CAGE_peak_1_at_COBRA1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I137221	137221486	137232704	2.85	[{'connected_gene': 'RNF224', 'score': 556.63}, {'connected_gene': 'SLC34A3', 'score': 555.96}, {'connected_gene': 'EHMT1', 'score': 17.44}, {'connected_gene': 'LOC651337', 'score': 15.59}, {'connected_gene': 'SDCCAG3', 'score': 15.1}, {'connected_gene': 'ANAPC2', 'score': 12.28}, {'connected_gene': 'RNF208', 'score': 7.2}, {'connected_gene': 'CYSRT1', 'score': 7.15}, {'connected_gene': 'NDOR1', 'score': 6.77}, {'connected_gene': 'MRPL41', 'score': 5.76}, {'connected_gene': 'GRIN1', 'score': 3.3}, {'connected_gene': 'FBXW5', 'score': 2.93}, {'connected_gene': 'NSMF', 'score': 2.57}, {'connected_gene': 'NPDC1', 'score': 2.53}, {'connected_gene': 'ARRDC1-AS1', 'score': 2.52}, {'connected_gene': 'DPH7', 'score': 1.92}, {'connected_gene': 'TPRN', 'score': 1.77}, {'connected_gene': 'NELFB', 'score': 1.57}, {'connected_gene': 'RABL6', 'score': 1.51}, {'connected_gene': 'ABCA2', 'score': 1.5}, {'connected_gene': 'TMEM203', 'score': 1.43}, {'connected_gene': 'SSNA1', 'score': 1.43}]
chr9	GH09I137275	137275290	137279215	2.23	[{'connected_gene': 'TOR4A', 'score': 550.77}, {'connected_gene': 'NELFB', 'score': 0.34}]
chr9	GH09I137271	137271362	137271658	0.51	[{'connected_gene': 'TOR4A', 'score': 0.44}, {'connected_gene': 'NELFB', 'score': 0.37}]
chr9	GH09I137267	137267692	137270028	1.36	[{'connected_gene': 'NELFB', 'score': 24.1}, {'connected_gene': 'EHMT1', 'score': 23.02}, {'connected_gene': 'ANAPC2', 'score': 19.23}, {'connected_gene': 'SNHG7', 'score': 16.62}, {'connected_gene': 'SEC16A', 'score': 13.48}, {'connected_gene': 'SDCCAG3', 'score': 11.83}, {'connected_gene': 'LOC651337', 'score': 10.79}, {'connected_gene': 'DPH7', 'score': 10.75}, {'connected_gene': 'STPG3', 'score': 6.33}, {'connected_gene': 'TOR4A', 'score': 0.44}]
chr9	GH09I137262	137262855	137263425	0.43	[{'connected_gene': 'NELFB', 'score': 23.86}, {'connected_gene': 'TOR4A', 'score': 0.39}]
chr9	GH09I137273	137273849	137275002	1.03	[{'connected_gene': 'NELFB', 'score': 23.79}, {'connected_gene': 'TOR4A', 'score': 0.77}]
chr9	GH09I137265	137265665	137267574	0.49	[{'connected_gene': 'NELFB', 'score': 23.82}, {'connected_gene': 'TUBB4B', 'score': 13.39}, {'connected_gene': 'SLC34A3', 'score': 13.35}, {'connected_gene': 'NOXA1', 'score': 11.63}, {'connected_gene': 'EXD3', 'score': 11.32}, {'connected_gene': 'TOR4A', 'score': 0.39}]
chr9	GH09I137253	137253603	137256858	2.03	[{'connected_gene': 'NELFB', 'score': 575.38}, {'connected_gene': 'STPG3-AS1', 'score': 550.77}, {'connected_gene': 'MAN1B1', 'score': 5.06}, {'connected_gene': 'TOR4A', 'score': 0.34}]
chr9	GH09I137233	137233373	137243238	2.65	[{'connected_gene': 'TUBB4B', 'score': 550.77}, {'connected_gene': 'EHMT1', 'score': 90.39}, {'connected_gene': 'SDCCAG3', 'score': 59.97}, {'connected_gene': 'ANAPC2', 'score': 50.98}, {'connected_gene': 'NDOR1', 'score': 50.56}, {'connected_gene': 'DPH7', 'score': 40.53}, {'connected_gene': 'INPP5E', 'score': 40.02}, {'connected_gene': 'LOC651337', 'score': 36.84}, {'connected_gene': 'MAN1B1', 'score': 26.89}, {'connected_gene': 'SNHG7', 'score': 26.01}, {'connected_gene': 'SEC16A', 'score': 26.0}, {'connected_gene': 'EXD3', 'score': 13.5}, {'connected_gene': 'TRAF2', 'score': 10.75}, {'connected_gene': 'TMEM203', 'score': 10.34}, {'connected_gene': 'RABL6', 'score': 10.31}, {'connected_gene': 'NELFB', 'score': 8.98}, {'connected_gene': 'LCN15', 'score': 8.35}, {'connected_gene': 'ABCA2', 'score': 7.81}, {'connected_gene': 'TOR4A', 'score': 6.36}, {'connected_gene': 'UAP1L1', 'score': 6.25}, {'connected_gene': 'RNF224', 'score': 5.79}, {'connected_gene': 'CYSRT1', 'score': 5.23}, {'connected_gene': 'MRPL41', 'score': 5.19}, {'connected_gene': 'ZMYND19', 'score': 4.53}, {'connected_gene': 'PNPLA7', 'score': 3.77}, {'connected_gene': 'TPRN', 'score': 3.5}, {'connected_gene': 'LCNL1', 'score': 3.04}, {'connected_gene': 'ENTPD8', 'score': 2.25}, {'connected_gene': 'RNF208', 'score': 1.83}, {'connected_gene': 'DPP7', 'score': 1.81}, {'connected_gene': 'GRIN1', 'score': 1.71}, {'connected_gene': 'AJM1', 'score': 1.66}, {'connected_gene': 'NPDC1', 'score': 1.59}, {'connected_gene': 'NOXA1', 'score': 1.58}, {'connected_gene': 'PTGDS', 'score': 1.41}, {'connected_gene': 'ENTPD2', 'score': 1.26}, {'connected_gene': 'NSMF', 'score': 1.23}, {'connected_gene': 'SLC34A3', 'score': 0.44}]
chr9	GH09I137286	137286329	137286438	0.31	[{'connected_gene': 'GC09P137287', 'score': 550.77}, {'connected_gene': 'ENSG00000270259', 'score': 550.77}, {'connected_gene': 'NELFB', 'score': 8.83}, {'connected_gene': 'ENSG00000260996', 'score': 0.44}]