PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000374379	[[25071847, 25072116], [25124232, 25124342], [25140584, 25140710], [25153500, 25153607], [25166350, 25166532], [25167263, 25170815]]	[[25072044, 25072116], [25124232, 25124342], [25140584, 25140710], [25153500, 25153607], [25166350, 25166532], [25167263, 25167428]]
ENST00000497755	[[25071872, 25072116], [25119667, 25119704], [25124232, 25124342], [25140584, 25140710], [25153500, 25153607], [25166350, 25166398]]	None
ENST00000488683	[[25071872, 25072116], [25124232, 25124342], [25140584, 25140710], [25153500, 25153607], [25166350, 25166532], [25167263, 25169078], [25170619, 25170758]]	[[25072044, 25072116], [25124232, 25124342], [25140584, 25140710], [25153500, 25153607], [25166350, 25166532], [25167263, 25167428]]
ENST00000489758	[[25071899, 25072116], [25124232, 25124454]]	None
NM_013943	[[25071759, 25072116], [25124232, 25124342], [25140584, 25140710], [25153500, 25153607], [25166350, 25166532], [25167263, 25170815]]	[[25072044, 25072116], [25124232, 25124342], [25140584, 25140710], [25153500, 25153607], [25166350, 25166532], [25167263, 25167428]]

Promoter

Chrom	Start	End	Description
chr1	25071930	25071944	CAGE_peak_1_at_CLIC4_5end
chr1	25168712	25168734	CAGE_peak_4_at_CLIC4_5end
chr1	25168893	25168905	CAGE_peak_18_at_CLIC4_5end
chr1	25168909	25168925	CAGE_peak_11_at_CLIC4_5end
chr1	25168967	25169063	CAGE_peak_2_at_CLIC4_5end
chr1	25169284	25169298	CAGE_peak_9_at_CLIC4_5end
chr1	25169314	25169337	CAGE_peak_6_at_CLIC4_5end
chr1	25169419	25169465	CAGE_peak_5_at_CLIC4_5end
chr1	25169469	25169513	CAGE_peak_3_at_CLIC4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I024668	24668948	24674519	0.46	[{'connected_gene': 'NCMAP', 'score': 14.58}, {'connected_gene': 'CLIC4', 'score': 12.49}, {'connected_gene': 'RNU6-1208P', 'score': 11.42}, {'connected_gene': 'GC01P024703', 'score': 0.29}, {'connected_gene': 'SRRM1', 'score': 0.26}]
chr1	GH01I024768	24768124	24772145	1.47	[{'connected_gene': 'NCMAP', 'score': 9.75}, {'connected_gene': 'CLIC4', 'score': 5.21}, {'connected_gene': 'GC01M024778', 'score': 0.44}, {'connected_gene': 'RNU6-1208P', 'score': 0.44}]
chr1	GH01I024708	24708715	24710680	1.03	[{'connected_gene': 'NCMAP', 'score': 10.13}, {'connected_gene': 'ENSG00000284699', 'score': 0.77}, {'connected_gene': 'CLIC4', 'score': 0.28}]
chr1	GH01I024707	24707601	24708200	1	[{'connected_gene': 'NCMAP', 'score': 10.13}, {'connected_gene': 'ENSG00000284699', 'score': 0.77}, {'connected_gene': 'CLIC4', 'score': 0.28}]
chr1	GH01I024761	24761699	24763139	1.28	[{'connected_gene': 'NCMAP', 'score': 9.44}, {'connected_gene': 'GC01M024778', 'score': 0.37}, {'connected_gene': 'RNU6-1208P', 'score': 0.37}, {'connected_gene': 'CLIC4', 'score': 0.37}]
chr1	GH01I024682	24682504	24684557	1.08	[{'connected_gene': 'CLIC4', 'score': 12.51}, {'connected_gene': 'RNU6-1208P', 'score': 11.3}, {'connected_gene': 'NCMAP', 'score': 10.11}, {'connected_gene': 'GC01P024703', 'score': 0.37}, {'connected_gene': 'SRRM1', 'score': 0.23}]
chr1	GH01I024712	24712567	24715961	1.02	[{'connected_gene': 'CLIC4', 'score': 22.05}, {'connected_gene': 'RNU6-1208P', 'score': 11.62}, {'connected_gene': 'SRRM1', 'score': 4.73}, {'connected_gene': 'ENSG00000284699', 'score': 0.44}]
chr1	GH01I024740	24740581	24750318	2.32	[{'connected_gene': 'CLIC4', 'score': 560.51}, {'connected_gene': 'GC01M024778', 'score': 0.29}, {'connected_gene': 'RNU6-1208P', 'score': 0.29}]
chr1	GH01I024693	24693779	24696533	1.58	[{'connected_gene': 'CLIC4', 'score': 7.72}, {'connected_gene': 'GC01P024703', 'score': 0.44}, {'connected_gene': 'SRRM1', 'score': 0.21}]
chr1	GH01I024792	24792269	24795180	0.96	[{'connected_gene': 'CLIC4', 'score': 6.88}, {'connected_gene': 'GC01P024788', 'score': 0.44}, {'connected_gene': 'GC01P024848', 'score': 0.23}]
chr1	GH01I024739	24739950	24740099	0.31	[{'connected_gene': 'CLIC4', 'score': 0.44}, {'connected_gene': 'ENSG00000284699', 'score': 0.28}]
chr1	GH01I024728	24728718	24729880	0.38	[{'connected_gene': 'CLIC4', 'score': 8.14}, {'connected_gene': 'ENSG00000284699', 'score': 0.34}]
chr1	GH01I024724	24724003	24728359	1.63	[{'connected_gene': 'CLIC4', 'score': 9.31}, {'connected_gene': 'ENSG00000284699', 'score': 0.34}]
chr1	GH01I024717	24717767	24721226	1.11	[{'connected_gene': 'CLIC4', 'score': 7.92}, {'connected_gene': 'ENSG00000284699', 'score': 0.39}]
chr1	GH01I024699	24699190	24700199	0.78	[{'connected_gene': 'SRSF10', 'score': 14.49}, {'connected_gene': 'SYF2', 'score': 14.21}, {'connected_gene': 'PNRC2', 'score': 13.05}, {'connected_gene': 'SRRM1', 'score': 12.05}, {'connected_gene': 'ELOA', 'score': 10.89}, {'connected_gene': 'CLIC4', 'score': 8.25}, {'connected_gene': 'GC01P024703', 'score': 0.77}]
chr1	GH01I024678	24678670	24678819	0.66	[{'connected_gene': 'SRSF10', 'score': 27.18}, {'connected_gene': 'SRRM1', 'score': 17.32}, {'connected_gene': 'CLIC4', 'score': 12.5}, {'connected_gene': 'ELOA', 'score': 12.43}, {'connected_gene': 'PNRC2', 'score': 12.13}, {'connected_gene': 'RNU6-1208P', 'score': 11.29}, {'connected_gene': 'RPL11', 'score': 11.2}, {'connected_gene': 'NCMAP', 'score': 10.11}, {'connected_gene': 'GC01P024703', 'score': 0.34}]
chr1	GH01I024765	24765146	24766399	1.35	[{'connected_gene': 'SRSF10', 'score': 27.19}, {'connected_gene': 'SRRM1', 'score': 17.19}, {'connected_gene': 'CLIC4', 'score': 12.15}, {'connected_gene': 'PNRC2', 'score': 12.13}, {'connected_gene': 'NCMAP', 'score': 9.44}, {'connected_gene': 'GC01M024778', 'score': 0.39}, {'connected_gene': 'RNU6-1208P', 'score': 0.39}]
chr1	GH01I024802	24802801	24805000	0.74	[{'connected_gene': 'RNU6-1208P', 'score': 12.83}, {'connected_gene': 'CLIC4', 'score': 12.16}, {'connected_gene': 'NCMAP', 'score': 9.71}, {'connected_gene': 'IFNLR1', 'score': 4.33}, {'connected_gene': 'GC01P024788', 'score': 0.37}, {'connected_gene': 'GC01P024848', 'score': 0.26}]
chr1	GH01I024806	24806000	24806400	0.69	[{'connected_gene': 'RNU6-1208P', 'score': 12.83}, {'connected_gene': 'CLIC4', 'score': 11.6}, {'connected_gene': 'GC01P024788', 'score': 0.37}, {'connected_gene': 'GC01P024848', 'score': 0.26}]
chr1	GH01I024752	24752219	24752715	0.49	[{'connected_gene': 'RNU6-1208P', 'score': 12.33}, {'connected_gene': 'CLIC4', 'score': 0.44}, {'connected_gene': 'GC01M024778', 'score': 0.31}]
chr1	GH01I024753	24752801	24753000	0.31	[{'connected_gene': 'RNU6-1208P', 'score': 12.33}, {'connected_gene': 'CLIC4', 'score': 8.4}, {'connected_gene': 'GC01M024778', 'score': 0.31}]
chr1	GH01I024754	24754001	24754800	0.66	[{'connected_gene': 'RNU6-1208P', 'score': 12.71}, {'connected_gene': 'CLIC4', 'score': 0.44}, {'connected_gene': 'GC01M024778', 'score': 0.34}]
chr1	GH01I024730	24730388	24731301	1.07	[{'connected_gene': 'RNU6-1208P', 'score': 12.26}, {'connected_gene': 'CLIC4', 'score': 8.2}, {'connected_gene': 'ENSG00000284699', 'score': 0.31}]
chr1	GH01I024735	24735030	24737139	1.3	[{'connected_gene': 'RNU6-1208P', 'score': 12.28}, {'connected_gene': 'CLIC4', 'score': 8.27}, {'connected_gene': 'ENSG00000284699', 'score': 0.29}]
chr1	GH01I024732	24732602	24734024	0.84	[{'connected_gene': 'RNU6-1208P', 'score': 12.28}, {'connected_gene': 'CLIC4', 'score': 9.17}, {'connected_gene': 'ENSG00000284699', 'score': 0.31}]
chr1	GH01I024701	24701488	24703642	0.97	[{'connected_gene': 'GC01P024703', 'score': 550.77}, {'connected_gene': 'NCMAP', 'score': 10.13}, {'connected_gene': 'CLIC4', 'score': 8.96}, {'connected_gene': 'SRRM1', 'score': 4.72}]
chr1	GH01I024704	24704271	24706718	1.42	[{'connected_gene': 'ENSG00000284699', 'score': 550.77}, {'connected_gene': 'NCMAP', 'score': 10.13}, {'connected_gene': 'CLIC4', 'score': 7.44}]
chr1	GH01I024786	24786145	24786598	0.83	[{'connected_gene': 'GC01P024788', 'score': 550.77}, {'connected_gene': 'CLIC4', 'score': 11.79}, {'connected_gene': 'GC01M024778', 'score': 0.44}, {'connected_gene': 'RNU6-1208P', 'score': 0.44}]
chr1	GH01I024801	24801201	24801600	0.4	[{'connected_gene': 'GC01P024788', 'score': 0.39}, {'connected_gene': 'GC01P024848', 'score': 0.25}, {'connected_gene': 'CLIC4', 'score': 0.22}]
chr1	GH01I024788	24788299	24789368	0.31	[{'connected_gene': 'GC01P024788', 'score': 550.77}, {'connected_gene': 'CLIC4', 'score': 0.26}, {'connected_gene': 'GC01P024848', 'score': 0.22}]
chr1	GH01I024830	24830770	24830959	0.68	[{'connected_gene': 'GC01P024848', 'score': 0.37}, {'connected_gene': 'GC01P024788', 'score': 0.26}, {'connected_gene': 'CLIC4', 'score': 0.17}]
chr1	GH01I024722	24722155	24723204	0.89	[{'connected_gene': 'ENSG00000284699', 'score': 0.37}, {'connected_gene': 'CLIC4', 'score': 0.34}]
chr1	GH01I024790	24790214	24790925	0.52	[{'connected_gene': 'GC01P024788', 'score': 0.77}, {'connected_gene': 'CLIC4', 'score': 0.25}, {'connected_gene': 'GC01P024848', 'score': 0.22}]
chr1	GH01I024779	24779302	24780876	0.6	[{'connected_gene': 'GC01M024778', 'score': 0.77}, {'connected_gene': 'RNU6-1208P', 'score': 0.77}, {'connected_gene': 'GC01P024788', 'score': 0.44}, {'connected_gene': 'CLIC4', 'score': 0.29}]
chr1	GH01I024767	24767510	24767659	0.88	[{'connected_gene': 'GC01M024778', 'score': 0.39}, {'connected_gene': 'RNU6-1208P', 'score': 0.39}, {'connected_gene': 'CLIC4', 'score': 0.34}]
chr1	GH01I024774	24774945	24776484	0.52	[{'connected_gene': 'GC01M024778', 'score': 0.77}, {'connected_gene': 'RNU6-1208P', 'score': 0.77}, {'connected_gene': 'CLIC4', 'score': 0.29}]