PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000493615	[[110791014, 110791357], [110830876, 110831218], [110837502, 110837799], [110840967, 110841085], [110845030, 110845182], [110863745, 110863884], [110866249, 110866331], [110911197, 110911260], [110912046, 110912386]]	[[110791266, 110791357], [110830876, 110831218], [110837502, 110837799], [110840967, 110841085], [110845030, 110845182], [110863745, 110863884], [110866249, 110866331], [110911197, 110911260], [110912046, 110912226]]
ENST00000491525	[[110788917, 110788953], [110830876, 110831218], [110837502, 110837688]]	[[110837636, 110837688]]
ENST00000461477	[[110788961, 110789176], [110830876, 110831218], [110837502, 110837531]]	[[110789157, 110789176], [110830876, 110831218], [110837502, 110837531]]
ENST00000485303	[[110790589, 110791024], [110830876, 110831218], [110837502, 110837799], [110840967, 110841085], [110845030, 110845182], [110852481, 110854801]]	[[110790864, 110791024], [110830876, 110831218], [110837502, 110837799], [110840967, 110841085], [110845030, 110845182], [110852481, 110853062]]
ENST00000319792	[[110790714, 110791024], [110830876, 110831218], [110837502, 110837799], [110840967, 110841085], [110845030, 110845182], [110852507, 110852837]]	[[110790864, 110791024], [110830876, 110831218], [110837502, 110837799], [110840967, 110841085], [110845030, 110845182], [110852507, 110852539]]
ENST00000486596	[[110790866, 110791024], [110830876, 110831218], [110840967, 110841085], [110845030, 110845144]]	[[110790866, 110791024], [110830876, 110831218], [110840967, 110841085], [110845030, 110845144]]
ENST00000488016	[[110791340, 110791834], [110830876, 110831211]]	None
ENST00000470618	[[110792262, 110792338], [110830876, 110831218], [110837502, 110837638]]	None
ENST00000481766	[[110793050, 110793097], [110796031, 110796124], [110830876, 110831218], [110837502, 110837550]]	[[110793075, 110793097], [110796031, 110796124], [110830876, 110831218], [110837502, 110837550]]
ENST00000478327	[[110793741, 110794089], [110796031, 110796124], [110830856, 110830964]]	None
ENST00000485506	[[110911197, 110911260], [110994159, 110994410]]	[[110911197, 110911260], [110994159, 110994192]]
NM_001243288	[[110791014, 110791357], [110830876, 110831218], [110837502, 110837799], [110840967, 110841085], [110845030, 110845182], [110863745, 110863884], [110866249, 110866331], [110911197, 110911260], [110912046, 110913017]]	[[110791266, 110791357], [110830876, 110831218], [110837502, 110837799], [110840967, 110841085], [110845030, 110845182], [110863745, 110863884], [110866249, 110866331], [110911197, 110911260], [110912046, 110912226]]
NM_001243286	[[110790605, 110791024], [110830876, 110831218], [110837502, 110837799], [110840967, 110841085], [110845030, 110845182], [110852507, 110856407]]	[[110790864, 110791024], [110830876, 110831218], [110837502, 110837799], [110840967, 110841085], [110845030, 110845182], [110852507, 110852539]]
NM_015480	[[110790605, 110791024], [110830876, 110831218], [110837502, 110837799], [110840967, 110841085], [110845030, 110845182], [110852481, 110856407]]	[[110790864, 110791024], [110830876, 110831218], [110837502, 110837799], [110840967, 110841085], [110845030, 110845182], [110852481, 110853062]]

Promoter

Chrom	Start	End	Description
chr3	110790481	110790492	CAGE_peak_4_at_PVRL3_5end
chr3	110790546	110790562	CAGE_peak_3_at_PVRL3_5end
chr3	110790594	110790603	CAGE_peak_6_at_PVRL3_5end
chr3	110790620	110790683	CAGE_peak_1_at_PVRL3_5end
chr3	110790715	110790728	CAGE_peak_2_at_PVRL3_5end
chr3	110790904	110790935	CAGE_peak_7_at_PVRL3_5end
chr3	110791323	110791345	CAGE_peak_11_at_PVRL3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I110684	110684531	110687037	0.66	[{'connected_gene': 'NECTIN3', 'score': 5.54}, {'connected_gene': 'RPSAP29', 'score': 0.77}, {'connected_gene': 'GC03M110683', 'score': 0.44}]
chr3	GH03I110575	110575512	110580418	0.84	[{'connected_gene': 'NECTIN3', 'score': 19.06}, {'connected_gene': 'GC03M110552', 'score': 0.31}, {'connected_gene': 'RNU6ATAC15P', 'score': 0.31}, {'connected_gene': 'LOC105374037', 'score': 0.17}]
chr3	GH03I110567	110567694	110569346	0.49	[{'connected_gene': 'NECTIN3', 'score': 8.89}, {'connected_gene': 'GC03M110552', 'score': 0.37}, {'connected_gene': 'RNU6ATAC15P', 'score': 0.37}, {'connected_gene': 'LOC105374037', 'score': 0.15}]
chr3	GH03I110654	110654305	110656412	0.65	[{'connected_gene': 'NECTIN3', 'score': 5.63}, {'connected_gene': 'LOC105374037', 'score': 0.39}, {'connected_gene': 'GC03M110552', 'score': 0.15}, {'connected_gene': 'RNU6ATAC15P', 'score': 0.15}]
chr3	GH03I110412	110412606	110416472	0.84	[{'connected_gene': 'NECTIN3', 'score': 5.69}, {'connected_gene': 'LOC105374036', 'score': 0.29}, {'connected_gene': 'PIR42724', 'score': 0.25}]
chr3	GH03I110520	110520084	110522619	0.85	[{'connected_gene': 'NECTIN3', 'score': 20.08}, {'connected_gene': 'ENSG00000240895', 'score': 0.44}, {'connected_gene': 'LOC105374036', 'score': 0.19}]
chr3	GH03I111277	111277354	111277503	0.51	[{'connected_gene': 'NECTIN3', 'score': 9.49}, {'connected_gene': 'NECTIN3-AS1', 'score': 9.49}, {'connected_gene': 'LOC105374038', 'score': 0.44}, {'connected_gene': 'GC03M111287', 'score': 0.39}]
chr3	GH03I111281	111281645	111286919	0.49	[{'connected_gene': 'NECTIN3', 'score': 9.45}, {'connected_gene': 'NECTIN3-AS1', 'score': 9.45}, {'connected_gene': 'GC03M111287', 'score': 0.77}, {'connected_gene': 'LOC105374038', 'score': 0.39}]
chr3	GH03I111044	111044278	111045015	0.31	[{'connected_gene': 'NECTIN3', 'score': 11.27}, {'connected_gene': 'NECTIN3-AS1', 'score': 11.27}, {'connected_gene': 'GC03M111020', 'score': 0.44}, {'connected_gene': 'PIR53960', 'score': 0.39}]
chr3	GH03I111045	111045391	111047496	0.51	[{'connected_gene': 'NECTIN3', 'score': 11.53}, {'connected_gene': 'NECTIN3-AS1', 'score': 11.5}, {'connected_gene': 'PIR53960', 'score': 0.44}, {'connected_gene': 'GC03M111020', 'score': 0.39}]
chr3	GH03I111047	111047801	111048843	0.77	[{'connected_gene': 'NECTIN3', 'score': 11.57}, {'connected_gene': 'NECTIN3-AS1', 'score': 11.57}, {'connected_gene': 'PIR53960', 'score': 0.44}, {'connected_gene': 'GC03M111020', 'score': 0.39}]
chr3	GH03I111069	111069936	111074410	1.87	[{'connected_gene': 'NECTIN3', 'score': 550.77}, {'connected_gene': 'NECTIN3-AS1', 'score': 550.77}, {'connected_gene': 'GC03M111070', 'score': 0.44}]
chr3	GH03I110742	110742874	110743871	0.81	[{'connected_gene': 'NECTIN3', 'score': 6.09}, {'connected_gene': 'ENSG00000201426', 'score': 0.37}, {'connected_gene': 'GC03P110810', 'score': 0.2}]
chr3	GH03I110772	110772439	110775567	0.86	[{'connected_gene': 'NECTIN3', 'score': 3.93}, {'connected_gene': 'GC03P110810', 'score': 0.28}, {'connected_gene': 'ENSG00000201426', 'score': 0.25}]
chr3	GH03I110709	110709473	110712643	0.65	[{'connected_gene': 'NECTIN3', 'score': 4.97}, {'connected_gene': 'GC03P110705', 'score': 0.44}, {'connected_gene': 'GC03P110728', 'score': 0.37}]
chr3	GH03I111237	111237414	111237603	0.2	[{'connected_gene': 'LOC105374038', 'score': 0.29}, {'connected_gene': 'GC03P111199', 'score': 0.28}, {'connected_gene': 'NECTIN3', 'score': 0.1}]
chr3	GH03I111246	111246701	111247883	0.57	[{'connected_gene': 'LOC105374038', 'score': 0.34}, {'connected_gene': 'GC03P111199', 'score': 0.25}, {'connected_gene': 'NECTIN3', 'score': 0.1}]
chr3	GH03I111238	111238469	111239442	0.31	[{'connected_gene': 'LOC105374038', 'score': 0.29}, {'connected_gene': 'GC03P111199', 'score': 0.28}, {'connected_gene': 'NECTIN3', 'score': 0.1}]
chr3	GH03I110526	110526206	110529462	0.97	[{'connected_gene': 'ENSG00000240895', 'score': 550.77}, {'connected_gene': 'NECTIN3', 'score': 20.08}, {'connected_gene': 'RNU6ATAC15P', 'score': 12.56}, {'connected_gene': 'LOC105374036', 'score': 0.18}]
chr3	GH03I111033	111033834	111033983	0.38	[{'connected_gene': 'GC03M111020', 'score': 550.77}, {'connected_gene': 'NECTIN3', 'score': 11.13}, {'connected_gene': 'NECTIN3-AS1', 'score': 11.13}, {'connected_gene': 'LOC151760', 'score': 0.21}]
chr3	GH03I111087	111087733	111088451	0.31	[{'connected_gene': 'GC03M111070', 'score': 0.39}, {'connected_gene': 'NECTIN3', 'score': 0.37}, {'connected_gene': 'GC03P111199', 'score': 0.14}]
chr3	GH03I111151	111151574	111151723	0.63	[{'connected_gene': 'GC03P111199', 'score': 0.25}, {'connected_gene': 'GC03M111070', 'score': 0.19}, {'connected_gene': 'NECTIN3', 'score': 0.18}]
chr3	GH03I111078	111078201	111078400	0.2	[{'connected_gene': 'GC03M111070', 'score': 550.77}, {'connected_gene': 'NECTIN3', 'score': 0.44}, {'connected_gene': 'GC03P111199', 'score': 0.13}]
chr3	GH03I111210	111210974	111211123	0.31	[{'connected_gene': 'GC03P111199', 'score': 0.39}, {'connected_gene': 'LOC105374038', 'score': 0.22}, {'connected_gene': 'NECTIN3', 'score': 0.11}]