PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000471660	[[87276420, 87276706], [87294863, 87295058], [87299024, 87299127], [87302553, 87302660], [87302861, 87303064]]	[[87276703, 87276706], [87294863, 87295058], [87299024, 87299127], [87302553, 87302660], [87302861, 87302972]]
ENST00000263780	[[87276434, 87276706], [87289848, 87289940], [87294863, 87295058], [87299024, 87299127], [87302553, 87302660], [87302861, 87304698]]	[[87276672, 87276706], [87289848, 87289940], [87294863, 87295058], [87299024, 87299127], [87302553, 87302660], [87302861, 87302972]]
ENST00000494980	[[87276451, 87276706], [87289848, 87289940], [87294863, 87294968], [87299024, 87299127], [87302553, 87302660], [87302861, 87303076]]	[[87276672, 87276706], [87289848, 87289940], [87294863, 87294968], [87299024, 87299127], [87302553, 87302660], [87302861, 87302972]]
ENST00000472024	[[87276458, 87276706], [87289472, 87289603], [87289848, 87289940], [87294863, 87295058], [87299024, 87299127], [87302553, 87302620]]	None
ENST00000466696	[[87302198, 87302660], [87302861, 87303063]]	None
NM_001244644	[[87276412, 87276706], [87294863, 87295058], [87299024, 87299127], [87302553, 87302660], [87302861, 87304698]]	[[87276703, 87276706], [87294863, 87295058], [87299024, 87299127], [87302553, 87302660], [87302861, 87302972]]
NM_014043	[[87276412, 87276706], [87289848, 87289940], [87294863, 87295058], [87299024, 87299127], [87302553, 87302660], [87302861, 87304698]]	[[87276672, 87276706], [87289848, 87289940], [87294863, 87295058], [87299024, 87299127], [87302553, 87302660], [87302861, 87302972]]

Promoter

Chrom	Start	End	Description
chr3	87276407	87276493	CAGE_peak_1_at_CHMP2B_5end
chr3	87276496	87276507	CAGE_peak_2_at_CHMP2B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I087172	87172820	87173742	0.2	[{'connected_gene': 'VGLL3', 'score': 10.61}, {'connected_gene': 'CHMP2B', 'score': 7.68}, {'connected_gene': 'MIR4795', 'score': 0.23}, {'connected_gene': 'LINC00506', 'score': 0.18}]
chr3	GH03I087069	87069296	87071348	0.63	[{'connected_gene': 'VGLL3', 'score': 11.42}, {'connected_gene': 'CHMP2B', 'score': 6.47}, {'connected_gene': 'PPATP1', 'score': 0.37}, {'connected_gene': 'LINC00506', 'score': 0.37}]
chr3	GH03I087270	87270984	87272092	0.69	[{'connected_gene': 'CHMP2B', 'score': 6.38}, {'connected_gene': 'POU1F1', 'score': 0.44}]
chr3	GH03I087317	87317642	87322704	0.63	[{'connected_gene': 'CHMP2B', 'score': 9.92}, {'connected_gene': 'KRT8P25', 'score': 0.77}, {'connected_gene': 'POU1F1', 'score': 0.26}, {'connected_gene': 'GC03M087306', 'score': 0.26}]
chr3	GH03I087309	87309606	87310468	0.2	[{'connected_gene': 'CHMP2B', 'score': 8.28}, {'connected_gene': 'KRT8P25', 'score': 0.39}, {'connected_gene': 'POU1F1', 'score': 0.29}, {'connected_gene': 'GC03M087306', 'score': 0.23}]
chr3	GH03I087332	87332620	87334813	1.5	[{'connected_gene': 'CHMP2B', 'score': 6.0}, {'connected_gene': 'KRT8P25', 'score': 0.39}, {'connected_gene': 'GC03M087306', 'score': 0.31}]
chr3	GH03I087335	87335093	87336305	0.31	[{'connected_gene': 'CHMP2B', 'score': 8.24}, {'connected_gene': 'KRT8P25', 'score': 0.39}, {'connected_gene': 'GC03M087306', 'score': 0.31}]
chr3	GH03I086949	86949951	86950150	0.64	[{'connected_gene': 'CHMP2B', 'score': 1.42}, {'connected_gene': 'LOC105377196', 'score': 0.39}, {'connected_gene': 'VGLL3', 'score': 0.26}]
chr3	GH03I087226	87226401	87229001	1.97	[{'connected_gene': 'CHMP2B', 'score': 557.94}, {'connected_gene': 'MIR4795', 'score': 550.77}, {'connected_gene': 'POU1F1', 'score': 0.25}]
chr3	GH03I087090	87090801	87091000	0.2	[{'connected_gene': 'LINC00506', 'score': 550.77}, {'connected_gene': 'CHMP2B', 'score': 6.86}, {'connected_gene': 'MIR4795', 'score': 0.12}]