PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000533752	[[76493294, 76493477], [76506652, 76507112]]	[[76506660, 76507112]]
ENST00000333090	[[76494282, 76494448], [76506652, 76509198]]	[[76506660, 76507722]]
ENST00000525167	[[76495191, 76495409], [76506652, 76506976]]	[[76506660, 76506976]]
ENST00000527881	[[76502795, 76503813], [76506652, 76509188]]	[[76506660, 76507722]]
NM_001258210	[[76493356, 76493477], [76506652, 76509198]]	[[76506660, 76507722]]
NM_015516	[[76494284, 76494448], [76506652, 76509198]]	[[76506660, 76507722]]
NM_001318479	[[76495191, 76495220], [76506652, 76509198]]	[[76506660, 76507722]]
NM_001318478	[[76495191, 76495409], [76506652, 76509198]]	[[76506660, 76507722]]
NM_001318477	[[76502795, 76503813], [76506652, 76509198]]	[[76503779, 76503813], [76506652, 76507722]]

Promoter

Chrom	Start	End	Description
chr11	76493294	76493332	CAGE_peak_5_at_TSKU_5end
chr11	76494253	76494317	CAGE_peak_3_at_TSKU_5end
chr11	76494340	76494391	CAGE_peak_1_at_TSKU_5end
chr11	76494393	76494407	CAGE_peak_2_at_TSKU_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I076768	76767391	76773562	1.38	[{'connected_gene': 'EMSY', 'score': 16.52}, {'connected_gene': 'LOC101928837', 'score': 14.66}, {'connected_gene': 'UVRAG', 'score': 12.02}, {'connected_gene': 'ENSG00000254632', 'score': 9.42}, {'connected_gene': 'TSKU', 'score': 0.39}]
chr11	GH11I076379	76379342	76382989	2.05	[{'connected_gene': 'THAP12', 'score': 555.6}, {'connected_gene': 'GVQW3', 'score': 555.24}, {'connected_gene': 'TSKU', 'score': 14.67}, {'connected_gene': 'ENSG00000261578', 'score': 12.5}, {'connected_gene': 'EMSY', 'score': 11.02}, {'connected_gene': 'ENSG00000255363', 'score': 10.78}, {'connected_gene': 'LOC101928837', 'score': 10.71}, {'connected_gene': 'SNORD15B', 'score': 9.87}, {'connected_gene': 'ENSG00000255135', 'score': 5.62}]
chr11	GH11I076911	76911217	76911366	0.76	[{'connected_gene': 'ACER3', 'score': 17.5}, {'connected_gene': 'TSKU', 'score': 11.21}, {'connected_gene': 'LOC101928837', 'score': 11.21}, {'connected_gene': 'ENSG00000254632', 'score': 10.21}, {'connected_gene': 'ENSG00000254988', 'score': 0.2}]
chr11	GH11I076806	76806978	76808126	1.25	[{'connected_gene': 'ACER3', 'score': 17.91}, {'connected_gene': 'LOC101928837', 'score': 12.21}, {'connected_gene': 'TSKU', 'score': 12.18}, {'connected_gene': 'ENSG00000255363', 'score': 10.8}, {'connected_gene': 'EMSY', 'score': 10.16}, {'connected_gene': 'B3GNT6', 'score': 5.79}, {'connected_gene': 'ENSG00000261578', 'score': 0.44}]
chr11	GH11I076810	76810201	76810800	0.77	[{'connected_gene': 'TSKU', 'score': 12.18}, {'connected_gene': 'LOC101928837', 'score': 12.18}, {'connected_gene': 'ACER3', 'score': 11.64}, {'connected_gene': 'ENSG00000261578', 'score': 0.39}]
chr11	GH11I076766	76766077	76766226	0.77	[{'connected_gene': 'TSKU', 'score': 8.91}, {'connected_gene': 'ENSG00000254632', 'score': 0.77}, {'connected_gene': 'GC11P076754', 'score': 0.39}]
chr11	GH11I076698	76698317	76705176	1.42	[{'connected_gene': 'LOC107984360', 'score': 11.7}, {'connected_gene': 'ENSG00000254810', 'score': 11.68}, {'connected_gene': 'TSKU', 'score': 11.37}, {'connected_gene': 'LOC101928837', 'score': 11.37}, {'connected_gene': 'ENSG00000254632', 'score': 10.89}, {'connected_gene': 'ACER3', 'score': 10.22}, {'connected_gene': 'EMSY', 'score': 10.18}, {'connected_gene': 'GC11P076710', 'score': 0.44}, {'connected_gene': 'GUCY2EP', 'score': 0.34}, {'connected_gene': 'ENSG00000254975', 'score': 0.31}]
chr11	GH11I076780	76780724	76785733	2.28	[{'connected_gene': 'LOC101928837', 'score': 567.45}, {'connected_gene': 'TSKU', 'score': 558.26}, {'connected_gene': 'EMSY', 'score': 16.52}, {'connected_gene': 'UVRAG', 'score': 12.02}, {'connected_gene': 'ENSG00000254632', 'score': 6.26}, {'connected_gene': 'GC11P076787', 'score': 0.77}]
chr11	GH11I076773	76773584	76774432	1.07	[{'connected_gene': 'LOC101928837', 'score': 14.76}, {'connected_gene': 'ENSG00000254632', 'score': 9.59}, {'connected_gene': 'TSKU', 'score': 0.44}]
chr11	GH11I076791	76791311	76792340	0.54	[{'connected_gene': 'LOC101928837', 'score': 14.63}, {'connected_gene': 'ENSG00000254632', 'score': 12.74}, {'connected_gene': 'GC11P076787', 'score': 0.77}, {'connected_gene': 'ENSG00000261578', 'score': 0.44}, {'connected_gene': 'TSKU', 'score': 0.44}]
chr11	GH11I076794	76794651	76797679	0.31	[{'connected_gene': 'ENSG00000254632', 'score': 12.19}, {'connected_gene': 'ACER3', 'score': 10.72}, {'connected_gene': 'ENSG00000261578', 'score': 6.33}, {'connected_gene': 'GC11P076787', 'score': 0.44}, {'connected_gene': 'TSKU', 'score': 0.39}]
chr11	GH11I076786	76786614	76790685	1.34	[{'connected_gene': 'GC11P076787', 'score': 550.77}, {'connected_gene': 'LOC101928837', 'score': 24.98}, {'connected_gene': 'ENSG00000254632', 'score': 21.47}, {'connected_gene': 'ENSG00000261578', 'score': 15.87}, {'connected_gene': 'TSKU', 'score': 15.06}]
chr11	GH11I076793	76793016	76794449	0.92	[{'connected_gene': 'ENSG00000254632', 'score': 22.21}, {'connected_gene': 'LOC101928837', 'score': 14.82}, {'connected_gene': 'ENSG00000254810', 'score': 10.6}, {'connected_gene': 'LOC107984360', 'score': 10.6}, {'connected_gene': 'ENSG00000261578', 'score': 0.44}, {'connected_gene': 'GC11P076787', 'score': 0.44}, {'connected_gene': 'TSKU', 'score': 0.39}]