PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000370994	[[67873492, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67889960], [67890570, 67890642], [67890765, 67890906], [67891817, 67891968], [67895670, 67896098]]	[[67878889, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67889960], [67890570, 67890642], [67890765, 67890906], [67891817, 67891968], [67895670, 67895983]]
ENST00000370995	[[67876720, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67890005], [67890570, 67890660], [67890765, 67890906], [67891817, 67891968], [67895670, 67896069]]	[[67878889, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67890005], [67890570, 67890660], [67890765, 67890906], [67891817, 67891968], [67895670, 67895983]]
ENST00000361219	[[67878067, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67889960], [67890570, 67890660], [67890765, 67890906], [67891817, 67891968], [67895670, 67896082]]	[[67878889, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67889960], [67890570, 67890660], [67890765, 67890906], [67891817, 67891968], [67895670, 67895983]]
ENST00000370990	[[67878549, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67890005], [67890570, 67890642], [67890765, 67890906], [67891817, 67891968], [67895670, 67896055]]	[[67878889, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67890005], [67890570, 67890642], [67890765, 67890906], [67891817, 67891968], [67895670, 67895983]]
ENST00000490406	[[67889967, 67890005], [67890570, 67890642], [67890765, 67890906], [67891817, 67891968], [67895118, 67895340]]	None
ENST00000493607	[[67878898, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67890097]]	None
ENST00000462814	[[67880955, 67881022], [67885691, 67886248]]	None
ENST00000484880	[[67885447, 67885869], [67889882, 67889960], [67890570, 67890660], [67890765, 67890803]]	None
NM_001018067	[[67873492, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67890005], [67890570, 67890660], [67890765, 67890906], [67891817, 67891968], [67895670, 67896123]]	[[67878889, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67890005], [67890570, 67890660], [67890765, 67890906], [67891817, 67891968], [67895670, 67895983]]
NM_001018069	[[67873492, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67889960], [67890570, 67890660], [67890765, 67890906], [67891817, 67891968], [67895670, 67896123]]	[[67878889, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67889960], [67890570, 67890660], [67890765, 67890906], [67891817, 67891968], [67895670, 67895983]]
NM_001018068	[[67873492, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67890005], [67890570, 67890642], [67890765, 67890906], [67891817, 67891968], [67895670, 67896123]]	[[67878889, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67890005], [67890570, 67890642], [67890765, 67890906], [67891817, 67891968], [67895670, 67895983]]
NM_015640	[[67873492, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67889960], [67890570, 67890642], [67890765, 67890906], [67891817, 67891968], [67895670, 67896123]]	[[67878889, 67878946], [67880848, 67881022], [67885691, 67885869], [67889882, 67889960], [67890570, 67890642], [67890765, 67890906], [67891817, 67891968], [67895670, 67895983]]

Promoter

Chrom	Start	End	Description
chr1	67896009	67896043	CAGE_peak_3_at_SERBP1_5end
chr1	67896079	67896092	CAGE_peak_1_at_SERBP1_5end
chr1	67896095	67896106	CAGE_peak_2_at_SERBP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I067625	67625643	67635800	1.46	[{'connected_gene': 'MIER1', 'score': 13.81}, {'connected_gene': 'GADD45A', 'score': 11.63}, {'connected_gene': 'SERBP1', 'score': 11.16}, {'connected_gene': 'RNU6-1031P', 'score': 10.09}, {'connected_gene': 'CTBP2P8', 'score': 9.98}, {'connected_gene': 'DIRAS3', 'score': 6.15}, {'connected_gene': 'RN7SL392P', 'score': 0.31}, {'connected_gene': 'LOC105378780', 'score': 0.2}]
chr1	GH01I067338	67338278	67339106	0.72	[{'connected_gene': 'IL12RB2', 'score': 11.65}, {'connected_gene': 'SERBP1', 'score': 10.85}, {'connected_gene': 'RNU6-387P', 'score': 10.74}, {'connected_gene': 'RNU4ATAC4P', 'score': 10.35}, {'connected_gene': 'LOC105378779', 'score': 0.21}]
chr1	GH01I067339	67339451	67341220	0.95	[{'connected_gene': 'IL12RB2', 'score': 18.17}, {'connected_gene': 'SERBP1', 'score': 11.19}, {'connected_gene': 'RNU6-387P', 'score': 10.25}, {'connected_gene': 'LOC105378779', 'score': 0.22}]
chr1	GH01I067306	67306863	67308623	1.6	[{'connected_gene': 'IL12RB2', 'score': 555.69}, {'connected_gene': 'SERBP1', 'score': 5.15}, {'connected_gene': 'LOC105378779', 'score': 0.16}]
chr1	GH01I067407	67407160	67408247	0.49	[{'connected_gene': 'IL12RB2', 'score': 5.95}, {'connected_gene': 'GC01P067418', 'score': 0.44}, {'connected_gene': 'LOC105378779', 'score': 0.44}, {'connected_gene': 'SERBP1', 'score': 0.34}]
chr1	GH01I067427	67427060	67432504	2.29	[{'connected_gene': 'SERBP1', 'score': 558.72}, {'connected_gene': 'MIER1', 'score': 23.7}, {'connected_gene': 'RNU6-387P', 'score': 0.39}]
chr1	GH01I067446	67446533	67447809	0.38	[{'connected_gene': 'SERBP1', 'score': 8.21}, {'connected_gene': 'MIER1', 'score': 4.04}, {'connected_gene': 'PIR38616', 'score': 0.34}]
chr1	GH01I067336	67336483	67337487	0.31	[{'connected_gene': 'SERBP1', 'score': 10.82}, {'connected_gene': 'IL12RB2', 'score': 10.65}, {'connected_gene': 'RNU4ATAC4P', 'score': 10.36}, {'connected_gene': 'LOC105378779', 'score': 0.21}]
chr1	GH01I067355	67355277	67357014	0.77	[{'connected_gene': 'SERBP1', 'score': 7.14}, {'connected_gene': 'IL12RB2', 'score': 7.11}, {'connected_gene': 'LOC105378779', 'score': 0.26}]
chr1	GH01I067392	67392935	67393809	0.59	[{'connected_gene': 'SERBP1', 'score': 12.38}, {'connected_gene': 'RNU6-387P', 'score': 12.15}, {'connected_gene': 'LOC105378779', 'score': 0.44}, {'connected_gene': 'IL12RB2', 'score': 0.17}]
chr1	GH01I067418	67418285	67422419	0.52	[{'connected_gene': 'SERBP1', 'score': 12.63}, {'connected_gene': 'RNU6-387P', 'score': 0.77}]
chr1	GH01I067382	67382090	67382335	0.23	[{'connected_gene': 'SERBP1', 'score': 11.75}, {'connected_gene': 'LOC105378779', 'score': 0.37}, {'connected_gene': 'IL12RB2', 'score': 0.19}]
chr1	GH01I066727	66727168	66731194	0.54	[{'connected_gene': 'TCTEX1D1', 'score': 34.42}, {'connected_gene': 'MIER1', 'score': 13.86}, {'connected_gene': 'SERBP1', 'score': 11.1}, {'connected_gene': 'ENSG00000248458', 'score': 10.39}, {'connected_gene': 'SGIP1', 'score': 10.18}, {'connected_gene': 'GC01M066741', 'score': 0.37}]
chr1	GH01I067681	67681905	67690189	2.35	[{'connected_gene': 'GADD45A', 'score': 550.77}, {'connected_gene': 'MIER1', 'score': 29.36}, {'connected_gene': 'SERBP1', 'score': 10.64}, {'connected_gene': 'WDR78', 'score': 4.41}, {'connected_gene': 'LOC105378781', 'score': 0.2}]
chr1	GH01I067731	67731676	67739750	1.42	[{'connected_gene': 'GADD45A', 'score': 12.12}, {'connected_gene': 'SERBP1', 'score': 11.73}, {'connected_gene': 'RNU6-1031P', 'score': 10.23}, {'connected_gene': 'LOC105378781', 'score': 0.37}, {'connected_gene': 'GNG12', 'score': 0.15}]
chr1	GH01I067712	67712925	67714763	1.27	[{'connected_gene': 'GADD45A', 'score': 12.07}, {'connected_gene': 'SERBP1', 'score': 11.73}, {'connected_gene': 'RNU7-80P', 'score': 11.14}, {'connected_gene': 'LOC105378781', 'score': 0.26}, {'connected_gene': 'GNG12', 'score': 0.13}]
chr1	GH01I067440	67440798	67441841	0.7	[{'connected_gene': 'RNU6-387P', 'score': 11.49}, {'connected_gene': 'MIER1', 'score': 9.71}, {'connected_gene': 'SERBP1', 'score': 8.3}, {'connected_gene': 'PIR38616', 'score': 0.31}]
chr1	GH01I067439	67439398	67439527	0.59	[{'connected_gene': 'RNU6-387P', 'score': 11.49}, {'connected_gene': 'SERBP1', 'score': 0.44}, {'connected_gene': 'PIR38616', 'score': 0.29}]
chr1	GH01I067458	67458568	67462140	0.97	[{'connected_gene': 'RNU6-387P', 'score': 10.96}, {'connected_gene': 'RNU4ATAC4P', 'score': 10.35}, {'connected_gene': 'PIR38616', 'score': 0.39}, {'connected_gene': 'SERBP1', 'score': 0.31}]
chr1	GH01I067337	67336319	67336433	0.22	[{'connected_gene': 'RNU4ATAC4P', 'score': 10.36}, {'connected_gene': 'SERBP1', 'score': 10.33}, {'connected_gene': 'IL12RB2', 'score': 3.2}, {'connected_gene': 'MIER1', 'score': 2.67}, {'connected_gene': 'SLC35D1', 'score': 2.0}, {'connected_gene': 'IL23R', 'score': 1.39}, {'connected_gene': 'LOC105378779', 'score': 0.21}]
chr1	GH01I067463	67463158	67465268	0.79	[{'connected_gene': 'RNU4ATAC4P', 'score': 9.73}, {'connected_gene': 'RNU6-586P', 'score': 9.63}, {'connected_gene': 'PIR38616', 'score': 0.44}, {'connected_gene': 'SERBP1', 'score': 0.29}]
chr1	GH01I067399	67399709	67400960	0.85	[{'connected_gene': 'LOC105378779', 'score': 550.77}, {'connected_gene': 'SERBP1', 'score': 13.12}, {'connected_gene': 'RNU4ATAC4P', 'score': 10.43}, {'connected_gene': 'GC01P067418', 'score': 0.37}]
chr1	GH01I068127	68127820	68129613	0.64	[{'connected_gene': 'MIR1262', 'score': 10.71}, {'connected_gene': 'RPE65', 'score': 10.09}, {'connected_gene': 'SERBP1', 'score': 4.42}, {'connected_gene': 'CTBP2P8', 'score': 0.29}, {'connected_gene': 'GC01M068050', 'score': 0.23}, {'connected_gene': 'WLS', 'score': 0.15}, {'connected_gene': 'GNG12-AS1', 'score': 0.06}]
chr1	GH01I067467	67467937	67469035	0.69	[{'connected_gene': 'PIR38616', 'score': 550.77}, {'connected_gene': 'RNU4ATAC4P', 'score': 9.73}, {'connected_gene': 'RNU6-586P', 'score': 9.6}, {'connected_gene': 'SERBP1', 'score': 0.28}]
chr1	GH01I067412	67412824	67413135	0.51	[{'connected_gene': 'GC01P067418', 'score': 0.77}, {'connected_gene': 'LOC105378779', 'score': 0.39}, {'connected_gene': 'SERBP1', 'score': 0.37}]