PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000263921	[[54875955, 54876312], [54880003, 54880063], [54880229, 54880286], [54915121, 54915277], [54915417, 54915472], [54930348, 54930857]]	[[54876261, 54876312], [54880003, 54880063], [54880229, 54880286], [54915121, 54915277], [54915417, 54915472], [54930348, 54930467]]
ENST00000512964	[[54875991, 54876312], [54880003, 54880063], [54915121, 54915277], [54915417, 54915472], [54930348, 54930467]]	[[54876261, 54876312], [54880003, 54880063], [54915121, 54915277], [54915417, 54915472], [54930348, 54930467]]
ENST00000510894	[[54876145, 54876312], [54880003, 54880063], [54880229, 54880286], [54915205, 54915277], [54915417, 54915472], [54930348, 54930465]]	[[54876261, 54876312], [54880003, 54880063], [54880229, 54880286], [54915205, 54915277], [54915417, 54915472], [54930348, 54930465]]
ENST00000509678	[[54914997, 54915277], [54915417, 54915472], [54930348, 54930475]]	None
NM_012110	[[54875955, 54876312], [54880003, 54880063], [54880229, 54880286], [54915121, 54915277], [54915417, 54915472], [54930348, 54930815]]	[[54876261, 54876312], [54880003, 54880063], [54880229, 54880286], [54915121, 54915277], [54915417, 54915472], [54930348, 54930467]]

Promoter

Chrom	Start	End	Description
chr4	54930633	54930638	CAGE_peak_8_at_CHIC2_5end
chr4	54930662	54930701	CAGE_peak_3_at_CHIC2_5end
chr4	54930725	54930736	CAGE_peak_4_at_CHIC2_5end
chr4	54930753	54930786	CAGE_peak_1_at_CHIC2_5end
chr4	54930790	54930838	CAGE_peak_2_at_CHIC2_5end
chr4	54930876	54930887	CAGE_peak_5_at_CHIC2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I053676	53676260	53677016	0.95	[{'connected_gene': 'LNX1', 'score': 18.04}, {'connected_gene': 'CHIC2', 'score': 5.77}, {'connected_gene': 'PDGFRA', 'score': 4.98}, {'connected_gene': 'GC04M053662', 'score': 0.44}, {'connected_gene': 'LOC100506444', 'score': 0.37}, {'connected_gene': 'ENSG00000282278', 'score': 0.06}]
chr4	GH04I053701	53701692	53703934	1.36	[{'connected_gene': 'LNX1', 'score': 550.77}, {'connected_gene': 'CHIC2', 'score': 5.09}, {'connected_gene': 'GC04P053729', 'score': 0.31}, {'connected_gene': 'LOC100506444', 'score': 0.26}, {'connected_gene': 'ENSG00000282278', 'score': 0.05}]
chr4	GH04I053734	53734215	53735743	0.98	[{'connected_gene': 'LNX1', 'score': 11.41}, {'connected_gene': 'LOC100506444', 'score': 11.3}, {'connected_gene': 'CHIC2', 'score': 3.19}, {'connected_gene': 'GC04P053729', 'score': 0.44}, {'connected_gene': 'ENSG00000249706', 'score': 0.1}, {'connected_gene': 'ENSG00000282278', 'score': 0.05}]
chr4	GH04I053376	53376889	53379201	1.98	[{'connected_gene': 'FIP1L1', 'score': 562.08}, {'connected_gene': 'ENSG00000282278', 'score': 550.77}, {'connected_gene': 'LOC105377654', 'score': 550.77}, {'connected_gene': 'ENSG00000272650', 'score': 11.73}, {'connected_gene': 'CHIC2', 'score': 11.26}, {'connected_gene': 'SCFD2', 'score': 5.87}, {'connected_gene': 'GC04M053405', 'score': 0.29}]
chr4	GH04I053687	53687279	53689214	1.3	[{'connected_gene': 'CHIC2', 'score': 4.15}, {'connected_gene': 'LNX1', 'score': 0.39}, {'connected_gene': 'GC04M053662', 'score': 0.34}, {'connected_gene': 'LOC100506444', 'score': 0.31}, {'connected_gene': 'ENSG00000282278', 'score': 0.06}]
chr4	GH04I053918	53918845	53920600	0.74	[{'connected_gene': 'CHIC2', 'score': 17.7}, {'connected_gene': 'ENSG00000249706', 'score': 14.37}, {'connected_gene': 'PDGFRA', 'score': 11.5}, {'connected_gene': 'GSX2', 'score': 10.99}, {'connected_gene': 'GC04M053928', 'score': 0.44}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]
chr4	GH04I053991	53991484	53993291	0.57	[{'connected_gene': 'CHIC2', 'score': 10.29}, {'connected_gene': 'ENSG00000249706', 'score': 5.89}, {'connected_gene': 'RPL21P44', 'score': 0.44}, {'connected_gene': 'ENSG00000272650', 'score': 0.44}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]
chr4	GH04I054103	54103401	54104471	0.43	[{'connected_gene': 'CHIC2', 'score': 10.8}, {'connected_gene': 'GSX2', 'score': 7.88}, {'connected_gene': 'RPL22P13', 'score': 0.13}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]
chr4	GH04I053994	53994494	53994643	0.38	[{'connected_gene': 'CHIC2', 'score': 11.49}, {'connected_gene': 'GSX2', 'score': 10.84}, {'connected_gene': 'ENSG00000272650', 'score': 0.77}, {'connected_gene': 'RPL21P44', 'score': 0.44}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]
chr4	GH04I054061	54061800	54068226	2.53	[{'connected_gene': 'CHIC2', 'score': 572.78}, {'connected_gene': 'GSX2', 'score': 11.47}, {'connected_gene': 'ENSG00000249706', 'score': 5.06}, {'connected_gene': 'ENSG00000269506', 'score': 0.44}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]
chr4	GH04I054001	54001627	54002210	0.83	[{'connected_gene': 'CHIC2', 'score': 11.32}, {'connected_gene': 'GSX2', 'score': 11.06}, {'connected_gene': 'ENSG00000272650', 'score': 0.77}, {'connected_gene': 'GC04P054015', 'score': 0.39}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]
chr4	GH04I054032	54032601	54033200	0.46	[{'connected_gene': 'CHIC2', 'score': 11.4}, {'connected_gene': 'GSX2', 'score': 10.67}, {'connected_gene': 'ENSG00000249706', 'score': 4.4}, {'connected_gene': 'GC04P054015', 'score': 0.37}, {'connected_gene': 'ENSG00000269506', 'score': 0.31}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]
chr4	GH04I054024	54024582	54024800	0.25	[{'connected_gene': 'CHIC2', 'score': 11.14}, {'connected_gene': 'GSX2', 'score': 3.71}, {'connected_gene': 'GC04P054015', 'score': 0.44}, {'connected_gene': 'ENSG00000269506', 'score': 0.29}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]
chr4	GH04I054031	54031801	54032200	0.31	[{'connected_gene': 'CHIC2', 'score': 11.4}, {'connected_gene': 'GSX2', 'score': 10.67}, {'connected_gene': 'ENSG00000249706', 'score': 5.35}, {'connected_gene': 'GC04P054015', 'score': 0.37}, {'connected_gene': 'ENSG00000269506', 'score': 0.31}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]
chr4	GH04I054091	54091001	54092600	1.06	[{'connected_gene': 'CHIC2', 'score': 11.48}, {'connected_gene': 'ENSG00000249706', 'score': 4.33}, {'connected_gene': 'GC04P054087', 'score': 0.77}, {'connected_gene': 'GSX2', 'score': 0.44}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]
chr4	GH04I054213	54213943	54214105	0.36	[{'connected_gene': 'GSX2', 'score': 10.79}, {'connected_gene': 'CHIC2', 'score': 1.5}, {'connected_gene': 'RPL22P13', 'score': 0.44}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]
chr4	GH04I054019	54019964	54020563	0.28	[{'connected_gene': 'GSX2', 'score': 23.85}, {'connected_gene': 'GC04P054015', 'score': 0.77}, {'connected_gene': 'ENSG00000269506', 'score': 0.28}, {'connected_gene': 'CHIC2', 'score': 0.25}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]
chr4	GH04I053363	53363800	53366975	2.03	[{'connected_gene': 'SCFD2', 'score': 556.77}, {'connected_gene': 'ENSG00000272650', 'score': 11.73}, {'connected_gene': 'FIP1L1', 'score': 11.7}, {'connected_gene': 'CHIC2', 'score': 11.25}, {'connected_gene': 'GC04M053266', 'score': 0.15}, {'connected_gene': 'RNU6-310P', 'score': 0.15}]
chr4	GH04I053913	53913565	53918491	1.23	[{'connected_gene': 'ENSG00000249706', 'score': 15.31}, {'connected_gene': 'PDGFRA', 'score': 11.75}, {'connected_gene': 'CHIC2', 'score': 9.02}, {'connected_gene': 'GC04M053928', 'score': 0.39}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]
chr4	GH04I054013	54013479	54014159	0.4	[{'connected_gene': 'GC04P054015', 'score': 550.77}, {'connected_gene': 'ENSG00000272650', 'score': 0.37}, {'connected_gene': 'CHIC2', 'score': 0.23}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]
chr4	GH04I054015	54015055	54016288	1.11	[{'connected_gene': 'GC04P054015', 'score': 550.77}, {'connected_gene': 'ENSG00000272650', 'score': 0.37}, {'connected_gene': 'CHIC2', 'score': 0.25}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]
chr4	GH04I053928	53928801	53929103	0.88	[{'connected_gene': 'GC04M053928', 'score': 550.77}, {'connected_gene': 'LOC100129728', 'score': 550.77}, {'connected_gene': 'CHIC2', 'score': 10.75}, {'connected_gene': 'GSX2', 'score': 10.75}, {'connected_gene': 'RPL21P44', 'score': 0.22}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]
chr4	GH04I053929	53929545	53930401	0.98	[{'connected_gene': 'GC04M053928', 'score': 550.77}, {'connected_gene': 'LOC100129728', 'score': 550.77}, {'connected_gene': 'GSX2', 'score': 10.76}, {'connected_gene': 'CHIC2', 'score': 10.75}, {'connected_gene': 'ENSG00000272650', 'score': 9.84}, {'connected_gene': 'RPL21P44', 'score': 0.22}, {'connected_gene': 'ENSG00000282278', 'score': 0.03}]