Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000300177 [[33010174, 33010362], [33022890, 33026870]] [[33022891, 33023446]]
ENST00000560677 [[33010204, 33010362], [33022890, 33022995], [33023116, 33023476]] [[33022891, 33022995], [33023116, 33023141]]
ENST00000560830 [[33010204, 33010362], [33022890, 33023005], [33023128, 33025503]] [[33022891, 33023005], [33023128, 33023446]]
ENST00000322805 [[33022891, 33023005], [33023128, 33026040]] [[33022891, 33023005], [33023128, 33023446]]
NM_001191322 [[33010204, 33010362], [33022890, 33022918], [33023128, 33026870]] [[33022891, 33022918], [33023128, 33023446]]
NM_001191323 [[33010204, 33010362], [33022890, 33023005], [33023128, 33026870]] [[33022891, 33023005], [33023128, 33023446]]
NM_013372 [[33010204, 33010362], [33022890, 33026870]] [[33022891, 33023446]]
Promoter
Chrom Start End Description
chr15 33010194 33010211 CAGE_peak_1_at_GREM1_5end
chr15 33022885 33022907 CAGE_peak_12_at_GREM1_5end
chr15 33022910 33022924 CAGE_peak_13_at_GREM1_5end
chr15 33022972 33022997 CAGE_peak_3_at_GREM1_5end
chr15 33023069 33023091 CAGE_peak_5_at_GREM1_5end
chr15 33023095 33023177 CAGE_peak_2_at_GREM1_5end
chr15 33023180 33023193 CAGE_peak_15_at_GREM1_5end
chr15 33023199 33023239 CAGE_peak_7_at_GREM1_5end
chr15 33023250 33023262 CAGE_peak_19_at_GREM1_5end
chr15 33023286 33023299 CAGE_peak_4_at_GREM1_5end
chr15 33023302 33023311 CAGE_peak_27_at_GREM1_5end
chr15 33023323 33023333 CAGE_peak_20_at_GREM1_5end
chr15 33023745 33023757 CAGE_peak_11_at_GREM1_5end
chr15 33023840 33023851 CAGE_peak_14_at_GREM1_5end
chr15 33023873 33023883 CAGE_peak_22_at_GREM1_5end
chr15 33024106 33024122 CAGE_peak_9_at_GREM1_5end
chr15 33024167 33024179 CAGE_peak_18_at_GREM1_5end
chr15 33024456 33024470 CAGE_peak_6_at_GREM1_5end
chr15 33024736 33024758 CAGE_peak_10_at_GREM1_5end
chr15 33024771 33024780 CAGE_peak_24_at_GREM1_5end
chr15 33024966 33024984 CAGE_peak_21_at_GREM1_5end
chr15 33024989 33024999 CAGE_peak_17_at_GREM1_5end
chr15 33025032 33025060 CAGE_peak_8_at_GREM1_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr15 GH15I032663 32663115 32666479 0.38 [{'connected_gene': 'SCG5', 'score': 11.23}, {'connected_gene': 'GREM1', 'score': 10.76}, {'connected_gene': 'ENSG00000212415', 'score': 10.68}, {'connected_gene': 'GOLGA8O', 'score': 6.6}, {'connected_gene': 'ARHGAP11A', 'score': 6.03}, {'connected_gene': 'GOLGA8N', 'score': 4.5}, {'connected_gene': 'LOC105370757', 'score': 0.44}, {'connected_gene': 'GC15P032669', 'score': 0.44}]
chr15 GH15I032986 32986673 32988053 0.31 [{'connected_gene': 'SCG5', 'score': 10.31}, {'connected_gene': 'GREM1', 'score': 10.04}, {'connected_gene': 'ENSG00000212415', 'score': 0.37}, {'connected_gene': 'HNRNPA1P71', 'score': 0.34}, {'connected_gene': 'FMN1', 'score': 0.08}]
chr15 GH15I032662 32662601 32663000 0.99 [{'connected_gene': 'SCG5', 'score': 11.23}, {'connected_gene': 'GREM1', 'score': 10.75}, {'connected_gene': 'ENSG00000212415', 'score': 10.68}, {'connected_gene': 'WHAMMP1', 'score': 4.58}, {'connected_gene': 'GC15P032669', 'score': 0.44}, {'connected_gene': 'LOC105370757', 'score': 0.39}]
chr15 GH15I032978 32978865 32981245 0.69 [{'connected_gene': 'SCG5', 'score': 10.53}, {'connected_gene': 'LOC105370757', 'score': 10.23}, {'connected_gene': 'GREM1', 'score': 9.27}, {'connected_gene': 'ENSG00000212415', 'score': 0.44}, {'connected_gene': 'HNRNPA1P71', 'score': 0.29}, {'connected_gene': 'FMN1', 'score': 0.08}]
chr15 GH15I032981 32981544 32982959 0.31 [{'connected_gene': 'SCG5', 'score': 10.52}, {'connected_gene': 'LOC105370757', 'score': 10.23}, {'connected_gene': 'GREM1', 'score': 9.27}, {'connected_gene': 'ENSG00000212415', 'score': 0.39}, {'connected_gene': 'HNRNPA1P71', 'score': 0.31}, {'connected_gene': 'FMN1', 'score': 0.08}]
chr15 GH15I032677 32677119 32677800 1.08 [{'connected_gene': 'GREM1', 'score': 10.94}, {'connected_gene': 'SCG5', 'score': 10.49}, {'connected_gene': 'ENSG00000212415', 'score': 10.15}, {'connected_gene': 'GOLGA8N', 'score': 4.53}, {'connected_gene': 'LOC105370757', 'score': 0.77}, {'connected_gene': 'GC15P032691', 'score': 0.39}]
chr15 GH15I032790 32790048 32791051 0.2 [{'connected_gene': 'GREM1', 'score': 10.24}, {'connected_gene': 'SCG5', 'score': 9.99}, {'connected_gene': 'ENSG00000212415', 'score': 9.5}, {'connected_gene': 'PIR40350', 'score': 0.37}, {'connected_gene': 'PIR43820', 'score': 0.29}, {'connected_gene': 'FMN1', 'score': 0.05}]
chr15 GH15I032860 32860761 32863111 1.21 [{'connected_gene': 'GREM1', 'score': 12.76}, {'connected_gene': 'ENSG00000212415', 'score': 10.49}, {'connected_gene': 'SCG5', 'score': 10.32}, {'connected_gene': 'LOC105370757', 'score': 9.94}, {'connected_gene': 'ENSG00000254912', 'score': 4.24}, {'connected_gene': 'PIR38190', 'score': 0.34}, {'connected_gene': 'PIR33047', 'score': 0.21}, {'connected_gene': 'FMN1', 'score': 0.06}]
chr15 GH15I032681 32681847 32688689 1.43 [{'connected_gene': 'GREM1', 'score': 11.56}, {'connected_gene': 'SCG5', 'score': 10.85}, {'connected_gene': 'ENSG00000212415', 'score': 10.7}, {'connected_gene': 'LOC105370756', 'score': 0.44}, {'connected_gene': 'GC15P032691', 'score': 0.44}, {'connected_gene': 'LOC105370757', 'score': 0.39}]
chr15 GH15I032854 32854859 32857838 1.33 [{'connected_gene': 'GREM1', 'score': 11.91}, {'connected_gene': 'ENSG00000212415', 'score': 10.43}, {'connected_gene': 'PIR38190', 'score': 0.39}, {'connected_gene': 'PIR33047', 'score': 0.2}, {'connected_gene': 'FMN1', 'score': 0.05}]
chr15 GH15I032849 32849235 32853947 1.2 [{'connected_gene': 'GREM1', 'score': 10.52}, {'connected_gene': 'ENSG00000212415', 'score': 10.36}, {'connected_gene': 'PIR38190', 'score': 0.44}, {'connected_gene': 'PIR33047', 'score': 0.19}, {'connected_gene': 'FMN1', 'score': 0.05}]
chr15 GH15I032848 32848161 32848995 0.2 [{'connected_gene': 'GREM1', 'score': 10.52}, {'connected_gene': 'PIR38190', 'score': 0.44}, {'connected_gene': 'PIR33047', 'score': 0.19}, {'connected_gene': 'FMN1', 'score': 0.05}]
chr15 GH15I032846 32846748 32847470 0.38 [{'connected_gene': 'GREM1', 'score': 10.53}, {'connected_gene': 'PIR38190', 'score': 0.44}, {'connected_gene': 'PIR33047', 'score': 0.19}, {'connected_gene': 'FMN1', 'score': 0.05}]
chr15 GH15I032827 32827809 32832079 1.15 [{'connected_gene': 'GREM1', 'score': 13.05}, {'connected_gene': 'LOC105370757', 'score': 10.89}, {'connected_gene': 'SCG5', 'score': 10.88}, {'connected_gene': 'ENSG00000212415', 'score': 10.2}, {'connected_gene': 'ARHGAP11A', 'score': 4.52}, {'connected_gene': 'PIR43820', 'score': 0.44}, {'connected_gene': 'ENSG00000259392', 'score': 0.44}, {'connected_gene': 'FMN1', 'score': 0.05}]
chr15 GH15I032801 32801666 32803428 0.64 [{'connected_gene': 'GREM1', 'score': 10.88}, {'connected_gene': 'ENSG00000212415', 'score': 10.47}, {'connected_gene': 'LOC105370757', 'score': 10.26}, {'connected_gene': 'SCG5', 'score': 10.23}, {'connected_gene': 'PIR43820', 'score': 0.34}, {'connected_gene': 'PIR40350', 'score': 0.31}, {'connected_gene': 'FMN1', 'score': 0.05}]
chr15 GH15I032832 32832819 32835002 0.72 [{'connected_gene': 'GREM1', 'score': 10.37}, {'connected_gene': 'ENSG00000212415', 'score': 10.29}, {'connected_gene': 'LOC105370757', 'score': 10.22}, {'connected_gene': 'SCG5', 'score': 10.21}, {'connected_gene': 'ENSG00000259392', 'score': 0.77}, {'connected_gene': 'PIR43820', 'score': 0.44}, {'connected_gene': 'FMN1', 'score': 0.05}]
chr15 GH15I032799 32799326 32800458 0.31 [{'connected_gene': 'GREM1', 'score': 10.88}, {'connected_gene': 'LOC105370757', 'score': 10.83}, {'connected_gene': 'SCG5', 'score': 10.8}, {'connected_gene': 'ENSG00000212415', 'score': 10.71}, {'connected_gene': 'PIR43820', 'score': 0.34}, {'connected_gene': 'PIR40350', 'score': 0.31}, {'connected_gene': 'FMN1', 'score': 0.05}]
chr15 GH15I032704 32704114 32707541 0.66 [{'connected_gene': 'GREM1', 'score': 13.92}, {'connected_gene': 'LOC105370757', 'score': 11.49}, {'connected_gene': 'SCG5', 'score': 11.41}, {'connected_gene': 'ENSG00000212415', 'score': 9.99}, {'connected_gene': 'LOC105370756', 'score': 0.39}]
chr15 GH15I032657 32657560 32657729 0.69 [{'connected_gene': 'GREM1', 'score': 10.69}, {'connected_gene': 'ENSG00000212415', 'score': 10.39}, {'connected_gene': 'GC15P032669', 'score': 0.39}, {'connected_gene': 'LOC105370757', 'score': 0.37}, {'connected_gene': 'SCG5', 'score': 0.37}]
chr15 GH15I032709 32709800 32709949 0.38 [{'connected_gene': 'GREM1', 'score': 0.44}, {'connected_gene': 'LOC105370756', 'score': 0.37}]
chr15 GH15I032712 32712737 32712759 0.37 [{'connected_gene': 'GREM1', 'score': 0.44}, {'connected_gene': 'LOC105370756', 'score': 0.34}]
chr15 GH15I032974 32974741 32975057 0.24 [{'connected_gene': 'GREM1', 'score': 2.05}, {'connected_gene': 'ENSG00000212415', 'score': 0.77}, {'connected_gene': 'HNRNPA1P71', 'score': 0.28}, {'connected_gene': 'FMN1', 'score': 0.08}]
chr15 GH15I032740 32740796 32740942 0.24 [{'connected_gene': 'GREM1', 'score': 20.72}, {'connected_gene': 'ENSG00000212415', 'score': 9.87}, {'connected_gene': 'GC15M032751', 'score': 0.77}, {'connected_gene': 'PIR33775', 'score': 0.44}]
chr15 GH15I032736 32736775 32737025 0.43 [{'connected_gene': 'GREM1', 'score': 13.4}, {'connected_gene': 'ENSG00000212415', 'score': 9.82}, {'connected_gene': 'PIR33775', 'score': 0.44}, {'connected_gene': 'GC15M032751', 'score': 0.44}]
chr15 GH15I032833 32832393 32832790 0.42 [{'connected_gene': 'LOC105370757', 'score': 10.23}, {'connected_gene': 'ENSG00000212415', 'score': 10.21}, {'connected_gene': 'SCG5', 'score': 10.21}, {'connected_gene': 'GREM1', 'score': 10.0}, {'connected_gene': 'ARHGAP11A', 'score': 4.53}, {'connected_gene': 'ENSG00000259392', 'score': 0.77}, {'connected_gene': 'PIR43820', 'score': 0.44}, {'connected_gene': 'FMN1', 'score': 0.05}]
chr15 GH15I032984 32984984 32986313 0.2 [{'connected_gene': 'LOC105370757', 'score': 10.63}, {'connected_gene': 'SCG5', 'score': 10.62}, {'connected_gene': 'GREM1', 'score': 10.04}, {'connected_gene': 'FMN1', 'score': 9.85}, {'connected_gene': 'ENSG00000212415', 'score': 0.39}, {'connected_gene': 'HNRNPA1P71', 'score': 0.31}]
chr15 GH15I032989 32989423 32990744 0.2 [{'connected_gene': 'LOC105370757', 'score': 10.68}, {'connected_gene': 'SCG5', 'score': 10.68}, {'connected_gene': 'GREM1', 'score': 10.49}, {'connected_gene': 'ENSG00000212415', 'score': 0.37}, {'connected_gene': 'HNRNPA1P71', 'score': 0.34}, {'connected_gene': 'FMN1', 'score': 0.08}]
chr15 GH15I032701 32700580 32700789 0.98 [{'connected_gene': 'LOC105370757', 'score': 11.51}, {'connected_gene': 'SCG5', 'score': 11.42}, {'connected_gene': 'ENSG00000212415', 'score': 9.99}, {'connected_gene': 'LOC105370756', 'score': 0.44}, {'connected_gene': 'GREM1', 'score': 0.37}]
chr15 GH15I032698 32698389 32699777 0.2 [{'connected_gene': 'LOC105370757', 'score': 11.51}, {'connected_gene': 'SCG5', 'score': 11.42}, {'connected_gene': 'ENSG00000212415', 'score': 9.99}, {'connected_gene': 'LOC105370756', 'score': 0.44}, {'connected_gene': 'GREM1', 'score': 0.37}]
chr15 GH15I032700 32700800 32702020 0.98 [{'connected_gene': 'LOC105370757', 'score': 11.51}, {'connected_gene': 'SCG5', 'score': 11.42}, {'connected_gene': 'ENSG00000212415', 'score': 9.99}, {'connected_gene': 'TMCO5B', 'score': 5.32}, {'connected_gene': 'LOC105370756', 'score': 0.44}, {'connected_gene': 'GREM1', 'score': 0.37}]
chr15 GH15I032715 32715206 32716109 0.76 [{'connected_gene': 'LOC101928042', 'score': 4.75}, {'connected_gene': 'GREM1', 'score': 0.77}, {'connected_gene': 'LOC105370756', 'score': 0.34}]
chr15 GH15I032716 32716414 32722161 1.77 [{'connected_gene': 'LOC100131315', 'score': 565.9}, {'connected_gene': 'GREM1', 'score': 562.82}, {'connected_gene': 'GC15M032721', 'score': 550.77}, {'connected_gene': 'LOC101928042', 'score': 4.75}, {'connected_gene': 'PIR33775', 'score': 0.39}]
chr15 GH15I032669 32669174 32672790 1.37 [{'connected_gene': 'GC15P032669', 'score': 550.77}, {'connected_gene': 'ARHGAP11A', 'score': 7.92}, {'connected_gene': 'GREM1', 'score': 6.47}, {'connected_gene': 'GOLGA8O', 'score': 5.09}, {'connected_gene': 'LOC105370757', 'score': 0.77}, {'connected_gene': 'SCG5', 'score': 0.31}]
chr15 GH15I032858 32858761 32860161 0.43 [{'connected_gene': 'ENSG00000212415', 'score': 10.67}, {'connected_gene': 'SCG5', 'score': 10.33}, {'connected_gene': 'GREM1', 'score': 9.81}, {'connected_gene': 'PIR38190', 'score': 0.37}, {'connected_gene': 'PIR33047', 'score': 0.21}, {'connected_gene': 'FMN1', 'score': 0.05}]
chr15 GH15I032941 32941741 32942938 0.2 [{'connected_gene': 'ENSG00000212415', 'score': 11.33}, {'connected_gene': 'SCG5', 'score': 9.92}, {'connected_gene': 'GREM1', 'score': 9.86}, {'connected_gene': 'LOC105370757', 'score': 9.76}, {'connected_gene': 'PIR33047', 'score': 0.34}, {'connected_gene': 'GC15P032971', 'score': 0.31}, {'connected_gene': 'FMN1', 'score': 0.07}]
chr15 GH15I032659 32659192 32660581 1.04 [{'connected_gene': 'ENSG00000212415', 'score': 10.36}, {'connected_gene': 'GREM1', 'score': 10.1}, {'connected_gene': 'GOLGA8O', 'score': 6.09}, {'connected_gene': 'WHAMMP1', 'score': 5.41}, {'connected_gene': 'GC15P032669', 'score': 0.44}, {'connected_gene': 'LOC105370757', 'score': 0.39}, {'connected_gene': 'SCG5', 'score': 0.37}]
chr15 GH15I032943 32943321 32944882 0.43 [{'connected_gene': 'ENSG00000212415', 'score': 11.33}, {'connected_gene': 'GREM1', 'score': 10.23}, {'connected_gene': 'SCG5', 'score': 9.92}, {'connected_gene': 'LOC105370757', 'score': 9.76}, {'connected_gene': 'PIR33047', 'score': 0.34}, {'connected_gene': 'GC15P032971', 'score': 0.31}, {'connected_gene': 'FMN1', 'score': 0.07}]
chr15 GH15I032918 32918332 32922233 0.96 [{'connected_gene': 'PIR33047', 'score': 550.77}, {'connected_gene': 'GREM1', 'score': 2.76}, {'connected_gene': 'PIR38190', 'score': 0.18}, {'connected_gene': 'FMN1', 'score': 0.06}]
chr15 GH15I032863 32863384 32865415 0.43 [{'connected_gene': 'ENSG00000212415', 'score': 10.49}, {'connected_gene': 'GREM1', 'score': 9.79}, {'connected_gene': 'PIR38190', 'score': 0.34}, {'connected_gene': 'PIR33047', 'score': 0.22}, {'connected_gene': 'FMN1', 'score': 0.06}]
chr15 GH15I032886 32886620 32886709 0.4 [{'connected_gene': 'ENSG00000212415', 'score': 10.32}, {'connected_gene': 'GREM1', 'score': 10.0}, {'connected_gene': 'PIR33047', 'score': 0.28}, {'connected_gene': 'PIR38190', 'score': 0.26}, {'connected_gene': 'FMN1', 'score': 0.06}]
chr15 GH15I032818 32818480 32820314 1.51 [{'connected_gene': 'ENSG00000212415', 'score': 10.65}, {'connected_gene': 'GREM1', 'score': 10.54}, {'connected_gene': 'PIR43820', 'score': 0.77}, {'connected_gene': 'PIR40350', 'score': 0.25}, {'connected_gene': 'FMN1', 'score': 0.05}]
chr15 GH15I032823 32823763 32826596 1.09 [{'connected_gene': 'PIR43820', 'score': 550.77}, {'connected_gene': 'GREM1', 'score': 10.58}, {'connected_gene': 'LOC105370757', 'score': 10.34}, {'connected_gene': 'SCG5', 'score': 10.32}, {'connected_gene': 'ARHGAP11A', 'score': 4.5}, {'connected_gene': 'ENSG00000259392', 'score': 0.39}, {'connected_gene': 'FMN1', 'score': 0.05}]
chr15 GH15I032747 32747638 32748217 0.51 [{'connected_gene': 'GC15M032755', 'score': 550.77}, {'connected_gene': 'GREM1', 'score': 12.01}, {'connected_gene': 'LOC105370757', 'score': 10.44}, {'connected_gene': 'SCG5', 'score': 10.39}, {'connected_gene': 'ENSG00000212415', 'score': 9.92}, {'connected_gene': 'GC15M032766', 'score': 0.37}]
chr15 GH15I032658 32658080 32658229 0.84 [{'connected_gene': 'ENSG00000212415', 'score': 10.36}, {'connected_gene': 'GREM1', 'score': 10.1}, {'connected_gene': 'LOC105370757', 'score': 0.39}, {'connected_gene': 'GC15P032669', 'score': 0.39}, {'connected_gene': 'SCG5', 'score': 0.37}]
chr15 GH15I032773 32773033 32776076 0.59 [{'connected_gene': 'PIR40350', 'score': 550.77}, {'connected_gene': 'GREM1', 'score': 11.3}, {'connected_gene': 'ENSG00000212415', 'score': 11.14}, {'connected_gene': 'WHAMMP1', 'score': 4.66}, {'connected_gene': 'PIR43820', 'score': 0.25}, {'connected_gene': 'FMN1', 'score': 0.05}]
chr15 GH15I032743 32743084 32744129 0.76 [{'connected_gene': 'GC15M032751', 'score': 550.77}, {'connected_gene': 'GREM1', 'score': 12.01}, {'connected_gene': 'ENSG00000212415', 'score': 9.87}, {'connected_gene': 'GC15M032755', 'score': 0.77}]
chr15 GH15I032843 32843607 32843776 0.64 [{'connected_gene': 'PIR38190', 'score': 550.77}, {'connected_gene': 'ENSG00000212415', 'score': 10.68}, {'connected_gene': 'LOC105370757', 'score': 9.97}, {'connected_gene': 'SCG5', 'score': 9.96}, {'connected_gene': 'GREM1', 'score': 9.87}, {'connected_gene': 'PIR33047', 'score': 0.18}, {'connected_gene': 'FMN1', 'score': 0.05}]
chr15 GH15I032837 32837817 32842561 1.31 [{'connected_gene': 'PIR38190', 'score': 550.77}, {'connected_gene': 'ENSG00000212415', 'score': 10.77}, {'connected_gene': 'LOC105370757', 'score': 10.63}, {'connected_gene': 'SCG5', 'score': 10.61}, {'connected_gene': 'GREM1', 'score': 1.91}, {'connected_gene': 'ENSG00000259392', 'score': 0.77}, {'connected_gene': 'FMN1', 'score': 0.05}]
chr15 GH15I032730 32730780 32731029 0.89 [{'connected_gene': 'PIR33775', 'score': 550.77}, {'connected_gene': 'ENSG00000212415', 'score': 9.98}, {'connected_gene': 'LOC100131315', 'score': 0.39}, {'connected_gene': 'GREM1', 'score': 0.39}, {'connected_gene': 'GC15M032721', 'score': 0.39}]
chr15 GH15I032729 32729593 32730650 0.49 [{'connected_gene': 'PIR33775', 'score': 550.77}, {'connected_gene': 'LOC100131315', 'score': 11.73}, {'connected_gene': 'ENSG00000212415', 'score': 9.98}, {'connected_gene': 'GREM1', 'score': 0.39}, {'connected_gene': 'GC15M032721', 'score': 0.39}]

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