PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000371116	[[63788729, 63790797]]	[[63788729, 63790166]]
NM_012183	[[63788729, 63790797]]	[[63788729, 63790166]]

Promoter

Chrom	Start	End	Description
chr1	63788229	63788250	CAGE_peak_1_at_FOXD3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I063319	63319698	63319779	0.49	[{'connected_gene': 'FOXD3', 'score': 2.43}, {'connected_gene': 'LINC00466', 'score': 0.77}]
chr1	GH01I063522	63522056	63524856	2.14	[{'connected_gene': 'ITGB3BP', 'score': 758.52}, {'connected_gene': 'EFCAB7', 'score': 644.59}, {'connected_gene': 'ALG6', 'score': 60.8}, {'connected_gene': 'DLEU2L', 'score': 35.14}, {'connected_gene': 'DOCK7', 'score': 18.8}, {'connected_gene': 'ROR1', 'score': 18.35}, {'connected_gene': 'FOXD3-AS1', 'score': 12.59}, {'connected_gene': 'FOXD3', 'score': 10.72}, {'connected_gene': 'ENSG00000235545', 'score': 10.4}, {'connected_gene': 'ATG4C', 'score': 10.02}, {'connected_gene': 'LOC441887', 'score': 9.57}, {'connected_gene': 'RN7SL488P', 'score': 0.44}]
chr1	GH01I063294	63294189	63296159	0.69	[{'connected_gene': 'LINC00466', 'score': 12.28}, {'connected_gene': 'FOXD3', 'score': 12.26}, {'connected_gene': 'FOXD3-AS1', 'score': 12.26}, {'connected_gene': 'LOC441887', 'score': 10.17}, {'connected_gene': 'ALG6', 'score': 10.16}, {'connected_gene': 'RPSAP65', 'score': 0.29}]
chr1	GH01I063321	63320550	63320699	0.43	[{'connected_gene': 'LINC00466', 'score': 0.77}, {'connected_gene': 'FOXD3', 'score': 0.77}]
chr1	GH01I063316	63316187	63318942	1.45	[{'connected_gene': 'LINC00466', 'score': 555.47}, {'connected_gene': 'ITGB3BP', 'score': 19.01}, {'connected_gene': 'USP1', 'score': 12.66}, {'connected_gene': 'FOXD3', 'score': 0.44}]
chr1	GH01I063320	63320921	63324807	1.65	[{'connected_gene': 'GC01P063324', 'score': 550.77}, {'connected_gene': 'FOXD3', 'score': 550.77}, {'connected_gene': 'FOXD3-AS1', 'score': 550.77}, {'connected_gene': 'GC01P063325', 'score': 550.77}, {'connected_gene': 'LINC00466', 'score': 0.44}]