PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000372134	[[85899195, 85899349], [85901217, 85901385], [85902410, 85902510], [85903750, 85903862], [85904630, 85904772], [85908485, 85908594], [85909810, 85909999], [85910464, 85910636], [85912019, 85913001]]	[[85901256, 85901385], [85902410, 85902510], [85903750, 85903862], [85904630, 85904772], [85908485, 85908594], [85909810, 85909999], [85910464, 85910636], [85912019, 85912104]]
NM_014394	[[85899184, 85899349], [85901217, 85901385], [85902410, 85902510], [85903750, 85903862], [85904630, 85904772], [85908485, 85908594], [85909810, 85909999], [85910464, 85910636], [85912019, 85913311]]	[[85901256, 85901385], [85902410, 85902510], [85903750, 85903862], [85904630, 85904772], [85908485, 85908594], [85909810, 85909999], [85910464, 85910636], [85912019, 85912104]]

Promoter

Chrom	Start	End	Description
chr10	85899247	85899273	CAGE_peak_2_at_GHITM_5end
chr10	85899276	85899324	CAGE_peak_1_at_GHITM_5end
chr10	85910525	85910537	CAGE_peak_4_at_GHITM_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I084196	84196467	84199418	0.62	[{'connected_gene': 'CDHR1', 'score': 17.15}, {'connected_gene': 'LRIT2', 'score': 15.17}, {'connected_gene': 'GHITM', 'score': 11.22}, {'connected_gene': 'PIR57101', 'score': 0.39}, {'connected_gene': 'GC10P084182', 'score': 0.37}]
chr10	GH10I084148	84148125	84148254	0.43	[{'connected_gene': 'CDHR1', 'score': 12.39}, {'connected_gene': 'ENSG00000271933', 'score': 5.49}, {'connected_gene': 'GHITM', 'score': 0.44}, {'connected_gene': 'CERNA2', 'score': 0.34}]
chr10	GH10I084135	84135325	84136786	0.52	[{'connected_gene': 'CDHR1', 'score': 10.74}, {'connected_gene': 'ENSG00000271933', 'score': 5.82}, {'connected_gene': 'GHITM', 'score': 0.77}, {'connected_gene': 'GC10M084047', 'score': 0.34}]
chr10	GH10I084200	84200783	84201880	0.91	[{'connected_gene': 'LRIT2', 'score': 15.55}, {'connected_gene': 'GHITM', 'score': 11.21}, {'connected_gene': 'CDHR1', 'score': 0.44}, {'connected_gene': 'PIR57101', 'score': 0.44}, {'connected_gene': 'GC10P084182', 'score': 0.37}]
chr10	GH10I084191	84191265	84191354	0.2	[{'connected_gene': 'LRIT2', 'score': 11.22}, {'connected_gene': 'GHITM', 'score': 11.07}, {'connected_gene': 'CDHR1', 'score': 0.77}, {'connected_gene': 'GC10P084182', 'score': 0.44}]
chr10	GH10I084188	84188481	84189108	0.2	[{'connected_gene': 'LRIT2', 'score': 11.2}, {'connected_gene': 'GHITM', 'score': 11.09}, {'connected_gene': 'CDHR1', 'score': 0.44}, {'connected_gene': 'GC10P084182', 'score': 0.44}]
chr10	GH10I084202	84202846	84203154	0.2	[{'connected_gene': 'LRIT2', 'score': 16.39}, {'connected_gene': 'LRIT1', 'score': 11.52}, {'connected_gene': 'GHITM', 'score': 11.3}, {'connected_gene': 'PIR57101', 'score': 0.77}, {'connected_gene': 'CDHR1', 'score': 0.44}]
chr10	GH10I084137	84137290	84141512	2.1	[{'connected_gene': 'GHITM', 'score': 566.96}, {'connected_gene': 'ENSG00000271933', 'score': 555.87}, {'connected_gene': 'RPS3AP5', 'score': 12.05}, {'connected_gene': 'CDHR1', 'score': 10.5}, {'connected_gene': 'C10orf99', 'score': 4.47}, {'connected_gene': 'GC10M084047', 'score': 0.31}]
chr10	GH10I084214	84214685	84214814	0.56	[{'connected_gene': 'LRIT1', 'score': 22.38}, {'connected_gene': 'GHITM', 'score': 10.88}, {'connected_gene': 'CDHR1', 'score': 6.11}, {'connected_gene': 'PIR57101', 'score': 0.44}, {'connected_gene': 'LRIT2', 'score': 0.39}]
chr10	GH10I084205	84205705	84205854	0.67	[{'connected_gene': 'LRIT1', 'score': 11.52}, {'connected_gene': 'GHITM', 'score': 11.29}, {'connected_gene': 'PIR57101', 'score': 0.77}, {'connected_gene': 'CDHR1', 'score': 0.39}]
chr10	GH10I084186	84186433	84188476	0.73	[{'connected_gene': 'ENSG00000271933', 'score': 27.29}, {'connected_gene': 'RPS3AP5', 'score': 21.8}, {'connected_gene': 'CDHR1', 'score': 21.44}, {'connected_gene': 'LRIT2', 'score': 11.2}, {'connected_gene': 'GHITM', 'score': 11.09}, {'connected_gene': 'GC10P084182', 'score': 0.44}]