PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000262138	[[64961025, 64961247], [65014304, 65014388], [65020975, 65021116], [65026581, 65029514]]	[[64961027, 64961247], [65014304, 65014388], [65020975, 65021116], [65026581, 65027120]]
NM_014405	[[64960979, 64961247], [65014304, 65014388], [65020975, 65021116], [65026581, 65029518]]	[[64961027, 64961247], [65014304, 65014388], [65020975, 65021116], [65026581, 65027120]]

Promoter

Chrom	Start	End	Description
chr17	64960778	64960804	CAGE_peak_2_at_CACNG4_5end
chr17	64960810	64960831	CAGE_peak_1_at_CACNG4_5end
chr17	64960832	64960852	CAGE_peak_3_at_CACNG4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I067042	67042447	67048275	1.43	[{'connected_gene': 'CACNG1', 'score': 550.77}, {'connected_gene': 'CACNG4', 'score': 11.39}, {'connected_gene': 'ENSG00000264421', 'score': 7.76}, {'connected_gene': 'GC17M067071', 'score': 0.29}]
chr17	GH17I066652	66652836	66656592	0.66	[{'connected_gene': 'APOH', 'score': 10.27}, {'connected_gene': 'CACNG4', 'score': 4.5}, {'connected_gene': 'RNA5SP445', 'score': 0.37}, {'connected_gene': 'ENSG00000229330', 'score': 0.34}, {'connected_gene': 'PRKCA', 'score': 0.05}]
chr17	GH17I066694	66694533	66694736	0.23	[{'connected_gene': 'CACNG4', 'score': 1.87}, {'connected_gene': 'PRKCA', 'score': 1.24}, {'connected_gene': 'ENSG00000229330', 'score': 0.37}, {'connected_gene': 'PIR44901', 'score': 0.29}]
chr17	GH17I066702	66702683	66702832	0.8	[{'connected_gene': 'CACNG4', 'score': 10.4}, {'connected_gene': 'PIR44901', 'score': 0.31}, {'connected_gene': 'ENSG00000229330', 'score': 0.31}, {'connected_gene': 'PRKCA', 'score': 0.05}]
chr17	GH17I066943	66943415	66945184	0.92	[{'connected_gene': 'CACNG4', 'score': 22.28}, {'connected_gene': 'CACNG5', 'score': 10.8}, {'connected_gene': 'MIR634', 'score': 10.31}, {'connected_gene': 'GC17P066938', 'score': 0.44}]
chr17	GH17I066776	66776508	66779620	0.68	[{'connected_gene': 'CACNG4', 'score': 10.93}, {'connected_gene': 'CACNG5', 'score': 10.82}, {'connected_gene': 'GC17P066788', 'score': 0.44}, {'connected_gene': 'PIR44901', 'score': 0.25}, {'connected_gene': 'PRKCA', 'score': 0.04}]
chr17	GH17I066949	66949473	66954945	1.63	[{'connected_gene': 'CACNG4', 'score': 22.71}, {'connected_gene': 'NOL11', 'score': 15.08}, {'connected_gene': 'HELZ', 'score': 14.41}, {'connected_gene': 'CACNG5', 'score': 10.79}, {'connected_gene': 'GC17P066938', 'score': 0.39}]
chr17	GH17I066963	66963665	66963814	0.91	[{'connected_gene': 'CACNG4', 'score': 550.77}, {'connected_gene': 'NOL11', 'score': 15.08}, {'connected_gene': 'HELZ', 'score': 14.41}, {'connected_gene': 'GC17P066938', 'score': 0.31}]
chr17	GH17I067005	67005794	67005932	0.22	[{'connected_gene': 'CACNG4', 'score': 12.78}, {'connected_gene': 'GC17M066972', 'score': 0.44}, {'connected_gene': 'GC17P066973', 'score': 0.29}]
chr17	GH17I066965	66963985	66964134	0.87	[{'connected_gene': 'CACNG4', 'score': 550.77}, {'connected_gene': 'GC17P066938', 'score': 0.31}]
chr17	GH17I066967	66966948	66967063	0.61	[{'connected_gene': 'CACNG4', 'score': 0.77}, {'connected_gene': 'GC17P066973', 'score': 0.44}]
chr17	GH17I066964	66964365	66965001	1.87	[{'connected_gene': 'CACNG4', 'score': 550.77}, {'connected_gene': 'GC17P066938', 'score': 0.31}]
chr17	GH17I066966	66965400	66965821	1.48	[{'connected_gene': 'CACNG4', 'score': 559.68}, {'connected_gene': 'GC17P066973', 'score': 0.44}]
chr17	GH17I066957	66957519	66958757	1.04	[{'connected_gene': 'CACNG5', 'score': 10.36}, {'connected_gene': 'CACNG4', 'score': 5.6}, {'connected_gene': 'GC17P066938', 'score': 0.37}]
chr17	GH17I067289	67289105	67291964	0.85	[{'connected_gene': 'RNA5SP447', 'score': 13.11}, {'connected_gene': 'HELZ', 'score': 12.02}, {'connected_gene': 'CACNG4', 'score': 6.26}, {'connected_gene': 'NOL11', 'score': 5.29}, {'connected_gene': 'ENSG00000264093', 'score': 0.39}, {'connected_gene': 'GC17M067328', 'score': 0.28}]
chr17	GH17I066947	66947385	66947534	0.51	[{'connected_gene': 'GC17P066938', 'score': 0.44}, {'connected_gene': 'CACNG4', 'score': 0.37}]
chr17	GH17I066980	66980125	66980274	0.2	[{'connected_gene': 'GC17P066973', 'score': 0.44}, {'connected_gene': 'CACNG4', 'score': 0.37}, {'connected_gene': 'GC17M066972', 'score': 0.29}]
chr17	GH17I066985	66985486	66985646	0.55	[{'connected_gene': 'GC17P066973', 'score': 0.39}, {'connected_gene': 'CACNG4', 'score': 0.34}, {'connected_gene': 'GC17M066972', 'score': 0.31}]