PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000527132	[[11984652, 11986016], [12029916, 12030177]]	None
ENST00000396505	[[11984652, 11986233], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12029916, 12030155], [12030416, 12030629]]	[[11986010, 11986233], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12029916, 12030129]]
ENST00000326932	[[11984652, 11986233], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12029916, 12030155], [12030718, 12030917]]	[[11986010, 11986233], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12029916, 12030129]]
ENST00000525493	[[11985937, 11986275], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12029916, 12030155], [12031184, 12031316]]	[[11986010, 11986275], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12029916, 12030129]]
ENST00000450094	[[11985977, 11986233], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12023846, 12023984], [12029916, 12030130]]	[[11986010, 11986233], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12023846, 12023984]]
ENST00000528188	[[11986161, 11986233], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12016167, 12016266]]	None
ENST00000532372	[[11987396, 11987512], [11988500, 11988645], [11989941, 11990293]]	None
ENST00000525927	[[11987419, 11987512], [11988500, 11988645], [11989941, 11990034], [12001232, 12001463]]	None
ENST00000532873	[[11987426, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12030416, 12030444]]	None
ENST00000533813	[[11987481, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12029916, 12030155], [12030585, 12030758]]	[[11987481, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12029916, 12030129]]
ENST00000534511	[[11988539, 11988645], [11989941, 11990034], [12023846, 12023984], [12029916, 12030171]]	[[11988539, 11988645], [11989941, 11990034], [12023846, 12023984], [12029916, 12030129]]
ENST00000529338	[[11989989, 11990034], [12023846, 12023984], [12029916, 12030155], [12030585, 12030684]]	[[11989989, 11990034], [12023846, 12023984], [12029916, 12030129]]
ENST00000526218	[[12000386, 12000601], [12001232, 12001330], [12020242, 12020326], [12023846, 12023984], [12029916, 12030155], [12031184, 12031272]]	None
ENST00000531309	[[12019746, 12020326], [12023846, 12023973]]	None
ENST00000530694	[[12023221, 12023422], [12023846, 12023984], [12029916, 12030155], [12031184, 12031284]]	None
ENST00000534479	[[12023295, 12023984], [12029916, 12030155], [12030718, 12030877]]	None
ENST00000533900	[[12023450, 12023749], [12023846, 12023984], [12029916, 12030155], [12030718, 12030759]]	None
NM_001018057	[[11984542, 11986233], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12029916, 12030186]]	[[11986010, 11986233], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12029916, 12030129]]
NM_015881	[[11984542, 11986233], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12029916, 12030155], [12030416, 12030629]]	[[11986010, 11986233], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12029916, 12030129]]
NM_001330220	[[11984542, 11986275], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12029916, 12030155], [12030718, 12030917]]	[[11986010, 11986275], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12029916, 12030129]]
NM_013253	[[11984542, 11986233], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12029916, 12030155], [12030718, 12030917]]	[[11986010, 11986233], [11987355, 11987512], [11988500, 11988645], [11989941, 11990034], [12020242, 12020326], [12023846, 12023984], [12029916, 12030129]]

Promoter

Chrom	Start	End	Description
chr11	11985769	11985800	CAGE_peak_13_at_DKK3_5end
chr11	11985829	11985841	CAGE_peak_26_at_DKK3_5end
chr11	12023924	12023940	CAGE_peak_15_at_DKK3_5end
chr11	12030131	12030183	CAGE_peak_1_at_DKK3_5end
chr11	12030188	12030199	CAGE_peak_5_at_DKK3_5end
chr11	12030588	12030599	CAGE_peak_9_at_DKK3_5end
chr11	12030633	12030644	CAGE_peak_8_at_DKK3_5end
chr11	12030681	12030692	CAGE_peak_10_at_DKK3_5end
chr11	12030746	12030757	CAGE_peak_11_at_DKK3_5end
chr11	12030770	12030824	CAGE_peak_3_at_DKK3_5end
chr11	12030834	12030845	CAGE_peak_7_at_DKK3_5end
chr11	12030847	12030895	CAGE_peak_2_at_DKK3_5end
chr11	12030905	12030916	CAGE_peak_6_at_DKK3_5end
chr11	12031073	12031088	CAGE_peak_12_at_DKK3_5end
chr11	12031273	12031359	CAGE_peak_4_at_DKK3_5end
chr11	12031383	12031390	CAGE_peak_34_at_DKK3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I012018	12018800	12021303	0.89	[{'connected_gene': 'MICAL2', 'score': 9.65}, {'connected_gene': 'DKK3', 'score': 6.95}, {'connected_gene': 'LINC02547', 'score': 0.39}]
chr11	GH11I012283	12283842	12289539	2.05	[{'connected_gene': 'MICALCL', 'score': 553.22}, {'connected_gene': 'MICAL2', 'score': 14.91}, {'connected_gene': 'ENSG00000254680', 'score': 11.29}, {'connected_gene': 'PARVA', 'score': 6.59}, {'connected_gene': 'TEAD1', 'score': 1.47}, {'connected_gene': 'DKK3', 'score': 1.32}, {'connected_gene': 'ENSG00000254983', 'score': 0.37}, {'connected_gene': 'GC11M012237', 'score': 0.31}]
chr11	GH11I011908	11908940	11910947	0.38	[{'connected_gene': 'USP47', 'score': 25.31}, {'connected_gene': 'MICAL2', 'score': 9.03}, {'connected_gene': 'GC11P011898', 'score': 0.39}, {'connected_gene': 'DKK3', 'score': 0.15}]
chr11	GH11I011968	11968111	11969861	0.69	[{'connected_gene': 'USP47', 'score': 7.01}, {'connected_gene': 'DKK3', 'score': 0.26}, {'connected_gene': 'GC11P011898', 'score': 0.19}]
chr11	GH11I011970	11970438	11970870	0.31	[{'connected_gene': 'USP47', 'score': 4.68}, {'connected_gene': 'DKK3', 'score': 0.28}, {'connected_gene': 'GC11P011898', 'score': 0.19}]
chr11	GH11I011948	11948644	11949058	0.74	[{'connected_gene': 'USP47', 'score': 10.0}, {'connected_gene': 'GC11P011898', 'score': 0.23}, {'connected_gene': 'DKK3', 'score': 0.21}]
chr11	GH11I011963	11963041	11966118	0.62	[{'connected_gene': 'USP47', 'score': 11.65}, {'connected_gene': 'DKK3', 'score': 0.25}, {'connected_gene': 'GC11P011898', 'score': 0.2}]
chr11	GH11I011971	11971206	11971771	0.31	[{'connected_gene': 'USP47', 'score': 10.61}, {'connected_gene': 'DKK3', 'score': 0.28}, {'connected_gene': 'GC11P011898', 'score': 0.19}]
chr11	GH11I011916	11916543	11917703	0.31	[{'connected_gene': 'USP47', 'score': 16.55}, {'connected_gene': 'GC11P011898', 'score': 0.37}, {'connected_gene': 'DKK3', 'score': 0.16}]
chr11	GH11I011959	11959521	11962685	0.46	[{'connected_gene': 'USP47', 'score': 14.07}, {'connected_gene': 'DKK3', 'score': 6.42}, {'connected_gene': 'GC11P011898', 'score': 0.21}]
chr11	GH11I011946	11946790	11947224	0.2	[{'connected_gene': 'USP47', 'score': 9.99}, {'connected_gene': 'GC11P011898', 'score': 0.25}, {'connected_gene': 'DKK3', 'score': 0.21}]
chr11	GH11I011972	11972543	11984168	1.46	[{'connected_gene': 'DKK3', 'score': 12.35}, {'connected_gene': 'MICAL2', 'score': 9.65}, {'connected_gene': 'USP47', 'score': 8.68}, {'connected_gene': 'GALNT18', 'score': 5.3}, {'connected_gene': 'MICALCL', 'score': 1.78}, {'connected_gene': 'GC11P011898', 'score': 0.18}]
chr11	GH11I012048	12048479	12049911	0.74	[{'connected_gene': 'DKK3', 'score': 22.32}, {'connected_gene': 'MICAL2', 'score': 14.46}, {'connected_gene': 'ENSG00000254991', 'score': 0.37}, {'connected_gene': 'LINC02547', 'score': 0.37}]
chr11	GH11I012050	12050634	12051922	0.86	[{'connected_gene': 'DKK3', 'score': 15.43}, {'connected_gene': 'MICAL2', 'score': 13.65}, {'connected_gene': 'ENSG00000254991', 'score': 0.37}, {'connected_gene': 'LINC02547', 'score': 0.34}]
chr11	GH11I012028	12028037	12029448	0.43	[{'connected_gene': 'DKK3', 'score': 25.49}, {'connected_gene': 'MICALCL', 'score': 10.46}, {'connected_gene': 'LINC02547', 'score': 0.77}]
chr11	GH11I012046	12046001	12048092	1.18	[{'connected_gene': 'DKK3', 'score': 18.11}, {'connected_gene': 'ENSG00000254991', 'score': 0.37}, {'connected_gene': 'LINC02547', 'score': 0.37}]
chr11	GH11I012016	12016860	12018411	1.03	[{'connected_gene': 'DKK3', 'score': 31.23}, {'connected_gene': 'LINC02547', 'score': 0.39}]
chr11	GH11I012041	12041570	12045547	1.63	[{'connected_gene': 'DKK3', 'score': 13.49}, {'connected_gene': 'LINC02547', 'score': 0.39}, {'connected_gene': 'ENSG00000254991', 'score': 0.34}]
chr11	GH11I012053	12053447	12054948	0.64	[{'connected_gene': 'DKK3', 'score': 4.84}, {'connected_gene': 'ENSG00000254991', 'score': 0.39}, {'connected_gene': 'LINC02547', 'score': 0.34}]
chr11	GH11I011995	11995356	11997131	0.58	[{'connected_gene': 'DKK3', 'score': 5.83}, {'connected_gene': 'GC11P011898', 'score': 0.15}]
chr11	GH11I011994	11994698	11994746	0.4	[{'connected_gene': 'DKK3', 'score': 0.37}, {'connected_gene': 'GC11P011898', 'score': 0.15}]
chr11	GH11I012000	12000836	12003740	0.54	[{'connected_gene': 'DKK3', 'score': 8.87}, {'connected_gene': 'GC11P011898', 'score': 0.15}]
chr11	GH11I011997	11997898	11999476	1.09	[{'connected_gene': 'DKK3', 'score': 10.22}, {'connected_gene': 'GC11P011898', 'score': 0.15}]
chr11	GH11I011993	11993443	11994682	1.07	[{'connected_gene': 'DKK3', 'score': 4.94}, {'connected_gene': 'GC11P011898', 'score': 0.15}]
chr11	GH11I011989	11989726	11992146	0.57	[{'connected_gene': 'DKK3', 'score': 0.37}, {'connected_gene': 'GC11P011898', 'score': 0.16}]
chr11	GH11I011984	11984502	11989172	1.14	[{'connected_gene': 'DKK3', 'score': 0.34}, {'connected_gene': 'GC11P011898', 'score': 0.17}]
chr11	GH11I012004	12004302	12009854	2.04	[{'connected_gene': 'DKK3', 'score': 558.49}, {'connected_gene': 'GC11P011898', 'score': 0.14}]
chr11	GH11I011966	11966934	11967103	0.84	[{'connected_gene': 'DKK3', 'score': 0.26}, {'connected_gene': 'GC11P011898', 'score': 0.2}]
chr11	GH11I011992	11992242	11993077	1.13	[{'connected_gene': 'DKK3', 'score': 4.17}, {'connected_gene': 'GC11P011898', 'score': 0.16}]
chr11	GH11I012031	12031635	12032279	0.2	[{'connected_gene': 'LINC02547', 'score': 550.77}, {'connected_gene': 'MICALCL', 'score': 10.82}, {'connected_gene': 'MICAL2', 'score': 10.27}, {'connected_gene': 'DKK3', 'score': 6.27}, {'connected_gene': 'ENSG00000254991', 'score': 0.29}]
chr11	GH11I012029	12029923	12030783	0.57	[{'connected_gene': 'LINC02547', 'score': 550.77}, {'connected_gene': 'DKK3', 'score': 0.34}]
chr11	GH11I012073	12073631	12080941	1.5	[{'connected_gene': 'ENSG00000255400', 'score': 15.14}, {'connected_gene': 'MICALCL', 'score': 13.49}, {'connected_gene': 'MICAL2', 'score': 3.55}, {'connected_gene': 'PARVA', 'score': 1.68}, {'connected_gene': 'DKK3', 'score': 1.48}, {'connected_gene': 'ENSG00000254991', 'score': 0.39}]