PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000263563	[[72238576, 72238815], [72285678, 72285892], [72288984, 72289087], [72289644, 72289824], [72291045, 72291210], [72292376, 72292537], [72292750, 72292826], [72293677, 72293829], [72294180, 72294280], [72294494, 72294599], [72297566, 72297662], [72298035, 72298164], [72298647, 72298764], [72298847, 72299003], [72299335, 72299518], [72300857, 72300998], [72301218, 72301290], [72307061, 72307202], [72324119, 72324275], [72326336, 72328205]]	[[72285707, 72285892], [72288984, 72289087], [72289644, 72289824], [72291045, 72291210], [72292376, 72292537], [72292750, 72292826], [72293677, 72293829], [72294180, 72294280], [72294494, 72294599], [72297566, 72297662], [72298035, 72298164], [72298647, 72298764], [72298847, 72299003], [72299335, 72299518], [72300857, 72300998], [72301218, 72301290], [72307061, 72307202], [72324119, 72324275], [72326336, 72326489]]
NM_014431	[[72238563, 72238815], [72285678, 72285892], [72288984, 72289087], [72289644, 72289824], [72291045, 72291210], [72292376, 72292537], [72292750, 72292826], [72293677, 72293829], [72294180, 72294280], [72294494, 72294599], [72297566, 72297662], [72298035, 72298164], [72298647, 72298764], [72298847, 72299003], [72299335, 72299518], [72300857, 72300998], [72301218, 72301290], [72307061, 72307202], [72324119, 72324275], [72326336, 72328206]]	[[72285707, 72285892], [72288984, 72289087], [72289644, 72289824], [72291045, 72291210], [72292376, 72292537], [72292750, 72292826], [72293677, 72293829], [72294180, 72294280], [72294494, 72294599], [72297566, 72297662], [72298035, 72298164], [72298647, 72298764], [72298847, 72299003], [72299335, 72299518], [72300857, 72300998], [72301218, 72301290], [72307061, 72307202], [72324119, 72324275], [72326336, 72326489]]

Promoter

Chrom	Start	End	Description
chr10	72238517	72238595	CAGE_peak_1_at_KIAA1274_5end
chr10	72238698	72238712	CAGE_peak_4_at_KIAA1274_5end
chr10	72238717	72238746	CAGE_peak_2_at_KIAA1274_5end
chr10	72238747	72238760	CAGE_peak_3_at_KIAA1274_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I070549	70549965	70550114	0.74	[{'connected_gene': 'SGPL1', 'score': 11.45}, {'connected_gene': 'PCBD1', 'score': 11.27}, {'connected_gene': 'PRF1', 'score': 0.23}, {'connected_gene': 'YY1P1', 'score': 0.21}, {'connected_gene': 'PALD1', 'score': 0.16}]
chr10	GH10I070551	70551043	70553978	0.86	[{'connected_gene': 'SGPL1', 'score': 11.46}, {'connected_gene': 'PCBD1', 'score': 11.27}, {'connected_gene': 'PRF1', 'score': 0.23}, {'connected_gene': 'YY1P1', 'score': 0.2}, {'connected_gene': 'PALD1', 'score': 0.16}]
chr10	GH10I069757	69757351	69758659	1	[{'connected_gene': 'DDX50', 'score': 49.52}, {'connected_gene': 'CEP57L1P1', 'score': 27.96}, {'connected_gene': 'PALD1', 'score': 18.73}, {'connected_gene': 'COL13A1', 'score': 11.17}, {'connected_gene': 'FAM241B', 'score': 10.3}, {'connected_gene': 'KIF1BP', 'score': 9.89}, {'connected_gene': 'TSPAN15', 'score': 4.72}, {'connected_gene': 'RPL5P26', 'score': 0.34}, {'connected_gene': 'GC10P069687', 'score': 0.19}]
chr10	GH10I070456	70456285	70456434	0.46	[{'connected_gene': 'NPFFR1', 'score': 9.42}, {'connected_gene': 'PALD1', 'score': 0.77}, {'connected_gene': 'NODAL', 'score': 0.44}]
chr10	GH10I070455	70455147	70455856	0.56	[{'connected_gene': 'NPFFR1', 'score': 9.42}, {'connected_gene': 'EIF4EBP2', 'score': 6.17}, {'connected_gene': 'PALD1', 'score': 0.77}, {'connected_gene': 'NODAL', 'score': 0.44}]
chr10	GH10I070558	70558614	70563399	1.4	[{'connected_gene': 'SAR1A', 'score': 11.4}, {'connected_gene': 'TYSND1', 'score': 10.12}, {'connected_gene': 'ADAMTS14', 'score': 4.79}, {'connected_gene': 'PRF1', 'score': 0.26}, {'connected_gene': 'YY1P1', 'score': 0.19}, {'connected_gene': 'PALD1', 'score': 0.15}]
chr10	GH10I070458	70458001	70459712	1.05	[{'connected_gene': 'PALD1', 'score': 550.77}, {'connected_gene': 'NPFFR1', 'score': 9.42}, {'connected_gene': 'YY1P1', 'score': 0.31}]
chr10	GH10I070477	70477530	70480926	2.48	[{'connected_gene': 'PALD1', 'score': 578.31}, {'connected_gene': 'NODAL', 'score': 10.9}, {'connected_gene': 'PCBD1', 'score': 9.86}, {'connected_gene': 'YY1P1', 'score': 0.44}]
chr10	GH10I070481	70481661	70483823	1	[{'connected_gene': 'PALD1', 'score': 14.7}, {'connected_gene': 'NODAL', 'score': 10.9}, {'connected_gene': 'PCBD1', 'score': 9.86}, {'connected_gene': 'YY1P1', 'score': 0.77}]
chr10	GH10I070495	70495873	70497337	0.52	[{'connected_gene': 'PALD1', 'score': 16.97}, {'connected_gene': 'CEP57L1P1', 'score': 16.49}, {'connected_gene': 'YY1P1', 'score': 0.39}, {'connected_gene': 'PRF1', 'score': 0.14}]
chr10	GH10I070459	70459887	70460135	0.2	[{'connected_gene': 'PALD1', 'score': 550.77}, {'connected_gene': 'EIF4EBP2', 'score': 10.98}, {'connected_gene': 'YY1P1', 'score': 0.31}]
chr10	GH10I070492	70492785	70495629	1.34	[{'connected_gene': 'PALD1', 'score': 27.11}, {'connected_gene': 'YY1P1', 'score': 0.44}, {'connected_gene': 'PRF1', 'score': 0.14}]
chr10	GH10I070506	70506122	70507356	0.31	[{'connected_gene': 'PALD1', 'score': 12.37}, {'connected_gene': 'YY1P1', 'score': 0.34}, {'connected_gene': 'PRF1', 'score': 0.15}]
chr10	GH10I070504	70504680	70505670	0.2	[{'connected_gene': 'PALD1', 'score': 12.37}, {'connected_gene': 'YY1P1', 'score': 0.37}, {'connected_gene': 'PRF1', 'score': 0.15}]
chr10	GH10I070491	70490698	70491604	0.52	[{'connected_gene': 'PALD1', 'score': 7.52}, {'connected_gene': 'YY1P1', 'score': 0.77}, {'connected_gene': 'PRF1', 'score': 0.14}]
chr10	GH10I070499	70499004	70501600	1.21	[{'connected_gene': 'PALD1', 'score': 15.62}, {'connected_gene': 'YY1P1', 'score': 0.39}, {'connected_gene': 'PRF1', 'score': 0.15}]
chr10	GH10I070507	70507921	70511071	1	[{'connected_gene': 'PALD1', 'score': 12.36}, {'connected_gene': 'YY1P1', 'score': 0.34}, {'connected_gene': 'PRF1', 'score': 0.16}]
chr10	GH10I070540	70540565	70540714	0.7	[{'connected_gene': 'CEP57L1P1', 'score': 10.4}, {'connected_gene': 'YY1P1', 'score': 0.23}, {'connected_gene': 'PRF1', 'score': 0.21}, {'connected_gene': 'PALD1', 'score': 0.18}]
chr10	GH10I070512	70512147	70512692	0.63	[{'connected_gene': 'EIF4EBP2', 'score': 10.37}, {'connected_gene': 'SAR1A', 'score': 9.74}, {'connected_gene': 'YY1P1', 'score': 0.31}, {'connected_gene': 'PALD1', 'score': 0.23}, {'connected_gene': 'PRF1', 'score': 0.16}]
chr10	GH10I070403	70403448	70406957	2.25	[{'connected_gene': 'EIF4EBP2', 'score': 560.46}, {'connected_gene': 'GC10M070403', 'score': 550.77}, {'connected_gene': 'PIR57459', 'score': 550.77}, {'connected_gene': 'LRRC20', 'score': 12.62}, {'connected_gene': 'PALD1', 'score': 11.21}, {'connected_gene': 'NODAL', 'score': 10.46}]
chr10	GH10I070462	70462206	70463374	0.79	[{'connected_gene': 'EIF4EBP2', 'score': 10.82}, {'connected_gene': 'PALD1', 'score': 0.77}, {'connected_gene': 'YY1P1', 'score': 0.34}]
chr10	GH10I070461	70461485	70461654	0.74	[{'connected_gene': 'EIF4EBP2', 'score': 10.82}, {'connected_gene': 'PALD1', 'score': 0.77}, {'connected_gene': 'YY1P1', 'score': 0.34}]
chr10	GH10I070651	70651745	70654633	1.53	[{'connected_gene': 'ADAMTS14', 'score': 28.18}, {'connected_gene': 'PRF1', 'score': 11.59}, {'connected_gene': 'PALD1', 'score': 10.34}, {'connected_gene': 'GC10M070611', 'score': 0.28}]
chr10	GH10I070565	70565401	70566000	0.51	[{'connected_gene': 'ADAMTS14', 'score': 6.6}, {'connected_gene': 'PRF1', 'score': 0.28}, {'connected_gene': 'YY1P1', 'score': 0.18}, {'connected_gene': 'PALD1', 'score': 0.14}]
chr10	GH10I070537	70537745	70537914	0.62	[{'connected_gene': 'YY1P1', 'score': 0.23}, {'connected_gene': 'PRF1', 'score': 0.21}, {'connected_gene': 'PALD1', 'score': 0.18}]
chr10	GH10I070533	70533809	70535445	0.43	[{'connected_gene': 'YY1P1', 'score': 0.25}, {'connected_gene': 'PRF1', 'score': 0.2}, {'connected_gene': 'PALD1', 'score': 0.18}]
chr10	GH10I070536	70536115	70537197	0.72	[{'connected_gene': 'YY1P1', 'score': 0.23}, {'connected_gene': 'PRF1', 'score': 0.2}, {'connected_gene': 'PALD1', 'score': 0.18}]
chr10	GH10I070528	70528905	70529034	0.83	[{'connected_gene': 'YY1P1', 'score': 0.26}, {'connected_gene': 'PRF1', 'score': 0.19}, {'connected_gene': 'PALD1', 'score': 0.19}]
chr10	GH10I070514	70514005	70514074	0.72	[{'connected_gene': 'YY1P1', 'score': 0.31}, {'connected_gene': 'PALD1', 'score': 0.22}, {'connected_gene': 'PRF1', 'score': 0.17}]
chr10	GH10I070522	70522685	70524185	0.58	[{'connected_gene': 'YY1P1', 'score': 0.28}, {'connected_gene': 'PALD1', 'score': 0.21}, {'connected_gene': 'PRF1', 'score': 0.18}]
chr10	GH10I070490	70490245	70490394	0.4	[{'connected_gene': 'YY1P1', 'score': 0.77}, {'connected_gene': 'PALD1', 'score': 0.29}, {'connected_gene': 'PRF1', 'score': 0.14}]
chr10	GH10I070475	70475765	70475914	0.43	[{'connected_gene': 'YY1P1', 'score': 0.39}, {'connected_gene': 'PALD1', 'score': 0.37}]
chr10	GH10I070485	70485311	70486649	0.43	[{'connected_gene': 'YY1P1', 'score': 550.77}, {'connected_gene': 'PALD1', 'score': 0.31}]