PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000259211	[[113763037, 113763458], [113763550, 113763664], [113764174, 113764314], [113765408, 113765621]]	[[113763448, 113763458], [113763550, 113763664], [113764174, 113764314], [113765408, 113765621]]
NM_014440	[[113763037, 113763458], [113763550, 113763664], [113764174, 113764314], [113765408, 113765621]]	[[113763448, 113763458], [113763550, 113763664], [113764174, 113764314], [113765408, 113765621]]

Promoter

Chrom	Start	End	Description
chr2	113763031	113763038	CAGE_peak_1_at_IL36A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I113071	113071530	113073714	1.22	[{'connected_gene': 'IL1F10', 'score': 550.77}, {'connected_gene': 'IL36B', 'score': 26.19}, {'connected_gene': 'IL1RN', 'score': 16.52}, {'connected_gene': 'PSD4', 'score': 16.12}, {'connected_gene': 'IL36RN', 'score': 10.75}, {'connected_gene': 'IL36A', 'score': 10.68}, {'connected_gene': 'IL37', 'score': 8.99}, {'connected_gene': 'NDUFB4P6', 'score': 4.84}, {'connected_gene': 'CDK8P2', 'score': 4.43}, {'connected_gene': 'GC02P113428', 'score': 0.39}]
chr2	GH02I113013	113012984	113013173	0.97	[{'connected_gene': 'ZC3H8', 'score': 11.05}, {'connected_gene': 'RNU6-1180P', 'score': 10.48}, {'connected_gene': 'IL1F10', 'score': 9.89}, {'connected_gene': 'IL36A', 'score': 0.44}, {'connected_gene': 'IL36B', 'score': 0.28}]
chr2	GH02I113111	113111802	113112800	0.83	[{'connected_gene': 'PAX8-AS1', 'score': 15.7}, {'connected_gene': 'RNU6-1180P', 'score': 11.61}, {'connected_gene': 'IL1F10', 'score': 10.46}, {'connected_gene': 'IL36A', 'score': 9.85}, {'connected_gene': 'IL1RN', 'score': 7.18}, {'connected_gene': 'PSD4', 'score': 5.67}, {'connected_gene': 'IL36B', 'score': 4.34}, {'connected_gene': 'GC02P113568', 'score': 0.44}, {'connected_gene': 'GC02P113379', 'score': 0.44}]
chr2	GH02I112995	112995610	112997835	0.38	[{'connected_gene': 'LOC442042', 'score': 550.77}, {'connected_gene': 'IL36G', 'score': 10.99}, {'connected_gene': 'IL37', 'score': 9.52}, {'connected_gene': 'IL36B', 'score': 7.57}, {'connected_gene': 'PAX8-AS1', 'score': 5.34}, {'connected_gene': 'IL36A', 'score': 0.44}]
chr2	GH02I113099	113099058	113099813	0.2	[{'connected_gene': 'IL1RN', 'score': 550.77}, {'connected_gene': 'IL1F10', 'score': 10.88}, {'connected_gene': 'PSD4', 'score': 10.25}, {'connected_gene': 'PAX8-AS1', 'score': 10.12}, {'connected_gene': 'IL36A', 'score': 4.98}, {'connected_gene': 'GC02P113568', 'score': 0.34}, {'connected_gene': 'GC02P113379', 'score': 0.34}]
chr2	GH02I113038	113038304	113038555	0.27	[{'connected_gene': 'IL1RN', 'score': 26.12}, {'connected_gene': 'IL1B', 'score': 25.38}, {'connected_gene': 'IL36G', 'score': 12.26}, {'connected_gene': 'IL1F10', 'score': 11.46}, {'connected_gene': 'IL36A', 'score': 11.44}, {'connected_gene': 'RNU6-1180P', 'score': 11.0}, {'connected_gene': 'PSD4', 'score': 9.64}, {'connected_gene': 'IL36B', 'score': 4.92}, {'connected_gene': 'IL1A', 'score': 4.69}, {'connected_gene': 'CBWD2', 'score': 1.69}, {'connected_gene': 'IL36RN', 'score': 1.64}]
chr2	GH02I113076	113076975	113080628	1.54	[{'connected_gene': 'IL1RN', 'score': 71.82}, {'connected_gene': 'IL36B', 'score': 50.21}, {'connected_gene': 'IL1B', 'score': 30.2}, {'connected_gene': 'IL36A', 'score': 20.86}, {'connected_gene': 'IL36RN', 'score': 20.5}, {'connected_gene': 'PSD4', 'score': 18.08}, {'connected_gene': 'IL36G', 'score': 9.61}, {'connected_gene': 'IL37', 'score': 8.99}, {'connected_gene': 'PAX8-AS1', 'score': 4.62}, {'connected_gene': 'IL1A', 'score': 4.2}, {'connected_gene': 'CBWD2', 'score': 1.76}, {'connected_gene': 'GC02P113428', 'score': 0.44}, {'connected_gene': 'IL1F10', 'score': 0.39}]
chr2	GH02I113005	113005411	113005470	0.68	[{'connected_gene': 'IL36A', 'score': 550.77}, {'connected_gene': 'LOC442042', 'score': 0.44}]
chr2	GH02I113039	113039906	113040106	0.48	[{'connected_gene': 'IL36B', 'score': 36.2}, {'connected_gene': 'IL1RN', 'score': 21.34}, {'connected_gene': 'IL1B', 'score': 15.12}, {'connected_gene': 'IL1F10', 'score': 11.46}, {'connected_gene': 'IL36A', 'score': 11.44}, {'connected_gene': 'RNU6-1180P', 'score': 11.0}, {'connected_gene': 'PSD4', 'score': 9.64}, {'connected_gene': 'IL36G', 'score': 8.82}, {'connected_gene': 'IL1A', 'score': 3.06}, {'connected_gene': 'CBWD2', 'score': 2.05}]
chr2	GH02I113052	113052444	113052593	0.2	[{'connected_gene': 'IL36B', 'score': 550.77}, {'connected_gene': 'IL36A', 'score': 0.25}]
chr2	GH02I113060	113060498	113060645	0.25	[{'connected_gene': 'IL36RN', 'score': 552.02}, {'connected_gene': 'IL36B', 'score': 24.45}, {'connected_gene': 'IL1RN', 'score': 20.82}, {'connected_gene': 'IL1B', 'score': 14.82}, {'connected_gene': 'RNU6-1180P', 'score': 11.2}, {'connected_gene': 'IL36A', 'score': 10.75}, {'connected_gene': 'IL36G', 'score': 7.77}, {'connected_gene': 'IL1A', 'score': 6.66}, {'connected_gene': 'CBWD2', 'score': 1.56}, {'connected_gene': 'IL1F10', 'score': 0.44}]
chr2	GH02I113059	113059149	113059208	0.68	[{'connected_gene': 'IL36RN', 'score': 550.77}, {'connected_gene': 'RNU6-1180P', 'score': 11.2}, {'connected_gene': 'IL36A', 'score': 10.76}, {'connected_gene': 'IL1F10', 'score': 0.44}]
chr2	GH02I113012	113012784	113012933	0.94	[{'connected_gene': 'RNU6-1180P', 'score': 10.48}, {'connected_gene': 'IL1F10', 'score': 9.88}, {'connected_gene': 'IL36B', 'score': 7.15}, {'connected_gene': 'IL36A', 'score': 0.44}]