PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr4	153700985	153701049	CAGE_peak_3_at_ARFIP1_5end
chr4	153701081	153701164	CAGE_peak_1_at_ARFIP1_5end
chr4	153701288	153701299	CAGE_peak_4_at_ARFIP1_5end
chr4	153771794	153771826	CAGE_peak_2_at_ARFIP1_5end
chr4	153771831	153771842	CAGE_peak_6_at_ARFIP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I152953	152953898	152959507	1.4	[{'connected_gene': 'FHDC1', 'score': 22.39}, {'connected_gene': 'RNF175', 'score': 8.92}, {'connected_gene': 'ARFIP1', 'score': 7.71}, {'connected_gene': 'TRIM2', 'score': 1.38}, {'connected_gene': 'PIR52121', 'score': 0.44}, {'connected_gene': 'GC04P152944', 'score': 0.39}, {'connected_gene': 'GC04P152946', 'score': 0.39}, {'connected_gene': 'GC04P152943', 'score': 0.39}, {'connected_gene': 'GC04P152945', 'score': 0.39}]
chr4	GH04I152848	152848815	152851747	0.89	[{'connected_gene': 'FHDC1', 'score': 11.32}, {'connected_gene': 'GC04P152882', 'score': 0.29}, {'connected_gene': 'GC04M152803', 'score': 0.29}, {'connected_gene': 'ARFIP1', 'score': 0.19}]
chr4	GH04I153564	153564140	153565539	1.37	[{'connected_gene': 'MND1', 'score': 11.55}, {'connected_gene': 'TMEM131L', 'score': 11.19}, {'connected_gene': 'ARFIP1', 'score': 11.18}, {'connected_gene': 'LOC105377498', 'score': 0.34}, {'connected_gene': 'PIR43440', 'score': 0.19}]
chr4	GH04I152938	152938989	152939035	0.31	[{'connected_gene': 'LOC729870', 'score': 550.77}, {'connected_gene': 'ARFIP1', 'score': 36.36}, {'connected_gene': 'GC04P152943', 'score': 0.77}, {'connected_gene': 'FHDC1', 'score': 0.31}]
chr4	GH04I152934	152934766	152938834	1.86	[{'connected_gene': 'LOC729870', 'score': 550.77}, {'connected_gene': 'ARFIP1', 'score': 29.39}, {'connected_gene': 'MIR4453HG', 'score': 10.48}, {'connected_gene': 'TRIM2', 'score': 3.07}, {'connected_gene': 'FHDC1', 'score': 3.0}, {'connected_gene': 'FAM192BP', 'score': 0.44}]
chr4	GH04I152949	152949610	152952398	0.96	[{'connected_gene': 'ARFIP1', 'score': 20.46}, {'connected_gene': 'GC04P152944', 'score': 0.44}, {'connected_gene': 'GC04P152946', 'score': 0.44}, {'connected_gene': 'GC04P152945', 'score': 0.44}, {'connected_gene': 'GC04P152943', 'score': 0.44}, {'connected_gene': 'PIR52121', 'score': 0.39}, {'connected_gene': 'FHDC1', 'score': 0.28}]
chr4	GH04I152892	152892243	152893852	0.2	[{'connected_gene': 'ARFIP1', 'score': 32.1}, {'connected_gene': 'GC04M152863', 'score': 0.44}, {'connected_gene': 'GC04P152882', 'score': 0.39}, {'connected_gene': 'FHDC1', 'score': 0.37}]
chr4	GH04I152778	152778666	152781226	2.06	[{'connected_gene': 'ARFIP1', 'score': 612.56}, {'connected_gene': 'GC04M152775', 'score': 550.77}, {'connected_gene': 'TIGD4', 'score': 550.77}, {'connected_gene': 'GC04M152797', 'score': 0.37}]
chr4	GH04I152801	152801353	152801412	0.5	[{'connected_gene': 'ARFIP1', 'score': 550.34}, {'connected_gene': 'GC04M152793', 'score': 0.77}, {'connected_gene': 'GC04M152803', 'score': 0.37}]
chr4	GH04I152784	152784909	152785038	0.57	[{'connected_gene': 'ARFIP1', 'score': 0.44}, {'connected_gene': 'GC04M152797', 'score': 0.39}]
chr4	GH04I152785	152785885	152786800	0.43	[{'connected_gene': 'ARFIP1', 'score': 0.44}, {'connected_gene': 'GC04M152797', 'score': 0.39}]
chr4	GH04I153151	153151657	153154756	2.07	[{'connected_gene': 'TRIM2', 'score': 555.71}, {'connected_gene': 'GC04M153152', 'score': 550.77}, {'connected_gene': 'MIR4453HG', 'score': 17.94}, {'connected_gene': 'ARFIP1', 'score': 11.2}, {'connected_gene': 'MND1', 'score': 10.43}, {'connected_gene': 'ENSG00000201786', 'score': 10.37}, {'connected_gene': 'RNU6-1196P', 'score': 10.37}]
chr4	GH04I153218	153218196	153224623	2.18	[{'connected_gene': 'TRIM2', 'score': 578.88}, {'connected_gene': 'ARFIP1', 'score': 40.92}, {'connected_gene': 'MIR4453HG', 'score': 23.31}, {'connected_gene': 'RNU6-1196P', 'score': 11.28}, {'connected_gene': 'ENSG00000201786', 'score': 11.27}, {'connected_gene': 'TIGD4', 'score': 10.87}, {'connected_gene': 'MND1', 'score': 10.7}, {'connected_gene': 'RNF175', 'score': 9.24}, {'connected_gene': 'LOC105377496', 'score': 0.31}, {'connected_gene': 'GC04M153170', 'score': 0.31}]
chr4	GH04I152719	152719038	152721116	0.59	[{'connected_gene': 'TMEM154', 'score': 11.25}, {'connected_gene': 'ENSG00000248571', 'score': 11.19}, {'connected_gene': 'ARFIP1', 'score': 8.77}, {'connected_gene': 'GC04M152705', 'score': 0.77}, {'connected_gene': 'GC04M152749', 'score': 0.28}]
chr4	GH04I152678	152678240	152678594	0.62	[{'connected_gene': 'TMEM154', 'score': 579.07}, {'connected_gene': 'GC04P152678', 'score': 550.77}, {'connected_gene': 'LOC105377495', 'score': 550.77}, {'connected_gene': 'FBXW7', 'score': 28.91}, {'connected_gene': 'ARFIP1', 'score': 3.63}]
chr4	GH04I151957	151956975	151957852	0.49	[{'connected_gene': 'LOC100505685', 'score': 550.77}, {'connected_gene': 'GC04P151958', 'score': 550.77}, {'connected_gene': 'ARFIP1', 'score': 12.53}, {'connected_gene': 'RPS3A', 'score': 10.59}, {'connected_gene': 'ENSG00000249818', 'score': 5.49}]
chr4	GH04I152796	152796840	152796922	0.22	[{'connected_gene': 'LOC100421721', 'score': 550.77}, {'connected_gene': 'GC04M152797', 'score': 550.77}, {'connected_gene': 'GC04M152793', 'score': 550.77}, {'connected_gene': 'ARFIP1', 'score': 0.37}]
chr4	GH04I152942	152942812	152945309	1.08	[{'connected_gene': 'GC04P152944', 'score': 550.77}, {'connected_gene': 'GC04P152946', 'score': 550.77}, {'connected_gene': 'GC04P152945', 'score': 550.77}, {'connected_gene': 'GC04P152943', 'score': 550.77}, {'connected_gene': 'FHDC1', 'score': 550.29}, {'connected_gene': 'ARFIP1', 'score': 35.97}, {'connected_gene': 'PIR52121', 'score': 0.37}]
chr4	GH04I152894	152894749	152894898	0.31	[{'connected_gene': 'GC04P152882', 'score': 0.39}, {'connected_gene': 'GC04M152863', 'score': 0.39}, {'connected_gene': 'FHDC1', 'score': 0.37}, {'connected_gene': 'ARFIP1', 'score': 0.14}]
chr4	GH04I153537	153537344	153540518	1.21	[{'connected_gene': 'PIR33610', 'score': 550.77}, {'connected_gene': 'ARFIP1', 'score': 11.63}, {'connected_gene': 'MND1', 'score': 10.56}, {'connected_gene': 'LOC105377498', 'score': 0.77}, {'connected_gene': 'TMEM131L', 'score': 0.19}]
chr4	GH04I152846	152846829	152846978	0.63	[{'connected_gene': 'GC04M152803', 'score': 0.31}, {'connected_gene': 'GC04P152882', 'score': 0.28}, {'connected_gene': 'ARFIP1', 'score': 0.2}]
chr4	GH04I152843	152843164	152844389	0.38	[{'connected_gene': 'GC04M152803', 'score': 0.34}, {'connected_gene': 'GC04P152882', 'score': 0.28}, {'connected_gene': 'ARFIP1', 'score': 0.21}]
chr4	GH04I152860	152860169	152860298	0.38	[{'connected_gene': 'GC04P152882', 'score': 0.34}, {'connected_gene': 'GC04M152803', 'score': 0.26}, {'connected_gene': 'ARFIP1', 'score': 0.18}]
chr4	GH04I152817	152817201	152817600	0.2	[{'connected_gene': 'GC04M152803', 'score': 0.77}, {'connected_gene': 'GC04M152793', 'score': 0.37}, {'connected_gene': 'ARFIP1', 'score': 0.28}]
chr4	GH04I152847	152847001	152847200	0.6	[{'connected_gene': 'GC04M152803', 'score': 0.31}, {'connected_gene': 'GC04P152882', 'score': 0.28}, {'connected_gene': 'ARFIP1', 'score': 0.2}]
chr4	GH04I152714	152714849	152715418	0.31	[{'connected_gene': 'GC04M152705', 'score': 550.77}, {'connected_gene': 'ENSG00000248571', 'score': 11.2}, {'connected_gene': 'TMEM154', 'score': 11.06}, {'connected_gene': 'ARFIP1', 'score': 6.51}, {'connected_gene': 'GC04M152697', 'score': 0.37}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000451320	[[153701088, 153701243], [153750776, 153750878], [153784757, 153784866], [153791904, 153792000], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153833509]]	[[153750785, 153750878], [153784757, 153784866], [153791904, 153792000], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153831371]]
ENST00000429148	[[153701090, 153701243], [153750776, 153750878], [153803874, 153804032], [153809284, 153809459], [153831215, 153832226]]	[[153750785, 153750878], [153803874, 153804032], [153809284, 153809459], [153831215, 153831371]]
ENST00000353617	[[153701111, 153701378], [153750776, 153750878], [153784757, 153784866], [153791904, 153792000], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153833064]]	[[153750785, 153750878], [153784757, 153784866], [153791904, 153792000], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153831371]]
ENST00000405727	[[153701122, 153701243], [153750776, 153750878], [153784757, 153784866], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153831816]]	[[153750785, 153750878], [153784757, 153784866], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153831371]]
ENST00000356064	[[153701136, 153701378], [153750776, 153750878], [153784757, 153784866], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153831396]]	[[153750785, 153750878], [153784757, 153784866], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153831371]]
ENST00000510831	[[153701144, 153701243], [153728355, 153728400], [153730824, 153730885], [153731231, 153731540]]	None
ENST00000509413	[[153701260, 153701378], [153728355, 153728400], [153730824, 153730885], [153731231, 153731538]]	None
ENST00000511289	[[153771794, 153771858], [153784757, 153784866], [153791904, 153792000], [153793603, 153793716], [153802114, 153802325]]	None
ENST00000513361	[[153771799, 153771879], [153784757, 153784866], [153791904, 153792000], [153793603, 153793716], [153802114, 153802263]]	None
ENST00000514499	[[153804396, 153804468], [153809284, 153809459], [153831215, 153831530]]	None
ENST00000510497	[[153832721, 153833154], [153838159, 153838236], [153839554, 153839615]]	None
NM_014447	[[153701088, 153701243], [153750776, 153750878], [153784757, 153784866], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153833064]]	[[153750785, 153750878], [153784757, 153784866], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153831371]]
NM_001287431	[[153701088, 153701243], [153750776, 153750878], [153784757, 153784866], [153791904, 153792000], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153833064]]	[[153750785, 153750878], [153784757, 153784866], [153791904, 153792000], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153831371]]
NM_001287433	[[153701088, 153701243], [153711910, 153712027], [153750776, 153750878], [153784757, 153784866], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153833064]]	[[153750785, 153750878], [153784757, 153784866], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153831371]]
NM_001025593	[[153701088, 153701378], [153750776, 153750878], [153784757, 153784866], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153833064]]	[[153750785, 153750878], [153784757, 153784866], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153831371]]
NM_001025595	[[153701088, 153701378], [153750776, 153750878], [153784757, 153784866], [153791904, 153792000], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153833064]]	[[153750785, 153750878], [153784757, 153784866], [153791904, 153792000], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153831371]]
NM_001287432	[[153701088, 153701378], [153711910, 153712027], [153750776, 153750878], [153784757, 153784866], [153791904, 153792000], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153833064]]	[[153750785, 153750878], [153784757, 153784866], [153791904, 153792000], [153793603, 153793716], [153802114, 153802336], [153803874, 153804032], [153809284, 153809459], [153831215, 153831371]]