PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000436639	[[109307639, 109308833], [109309745, 109309890], [109311847, 109312038], [109313989, 109314102], [109315664, 109315812], [109319715, 109319958], [109321693, 109321876], [109322490, 109322691], [109323480, 109323546], [109414997, 109416022]]	[[109308746, 109308833], [109309745, 109309890], [109311847, 109312038], [109313989, 109314102], [109315664, 109315812], [109319715, 109319958], [109321693, 109321876], [109322490, 109322691], [109323480, 109323546], [109414997, 109415276]]
ENST00000302071	[[109307644, 109308833], [109309745, 109309890], [109311847, 109312038], [109313989, 109314102], [109315664, 109315812], [109319715, 109319958], [109321693, 109321876], [109322490, 109322691], [109323480, 109323546], [109329952, 109330191]]	[[109308746, 109308833], [109309745, 109309890], [109311847, 109312038], [109313989, 109314102], [109315664, 109315812], [109319715, 109319958], [109321693, 109321876], [109322490, 109322661]]
ENST00000356644	[[109307644, 109308833], [109309745, 109309890], [109311847, 109312038], [109313989, 109314102], [109315664, 109315812], [109319715, 109319958], [109321693, 109321876], [109322490, 109322691], [109323480, 109323546], [109330561, 109330758]]	[[109308746, 109308833], [109309745, 109309890], [109311847, 109312038], [109313989, 109314102], [109315664, 109315812], [109319715, 109319958], [109321693, 109321876], [109322490, 109322691], [109323480, 109323546], [109330561, 109330663]]
ENST00000520364	[[109309565, 109309890], [109311847, 109312038], [109313989, 109314219]]	None
ENST00000368971	[[109314021, 109314102], [109315664, 109315812], [109319715, 109320078]]	None
ENST00000523632	[[109321141, 109321876], [109322490, 109322675]]	None
ENST00000517548	[[109409304, 109409446], [109411797, 109411862], [109414997, 109415171]]	None
NM_001199934	[[109307639, 109308833], [109309745, 109309890], [109311847, 109312038], [109313989, 109314102], [109315664, 109315812], [109319715, 109319958], [109321693, 109321876], [109322490, 109322691], [109323480, 109323546], [109329952, 109330191]]	[[109308746, 109308833], [109309745, 109309890], [109311847, 109312038], [109313989, 109314102], [109315664, 109315812], [109319715, 109319958], [109321693, 109321876], [109322490, 109322661]]
NM_001199933	[[109307639, 109308833], [109309745, 109309890], [109311847, 109312038], [109313989, 109314102], [109315664, 109315812], [109319715, 109319958], [109321693, 109321876], [109322490, 109322691], [109323480, 109323546], [109330561, 109330758]]	[[109308746, 109308833], [109309745, 109309890], [109311847, 109312038], [109313989, 109314102], [109315664, 109315812], [109319715, 109319958], [109321693, 109321876], [109322490, 109322691], [109323480, 109323546], [109330561, 109330663]]
NM_014454	[[109307639, 109308833], [109309745, 109309890], [109311847, 109312038], [109313989, 109314102], [109315664, 109315812], [109319715, 109319958], [109321693, 109321876], [109322490, 109322691], [109323480, 109323546], [109414997, 109415708]]	[[109308746, 109308833], [109309745, 109309890], [109311847, 109312038], [109313989, 109314102], [109315664, 109315812], [109319715, 109319958], [109321693, 109321876], [109322490, 109322691], [109323480, 109323546], [109414997, 109415276]]

Promoter

Chrom	Start	End	Description
chr6	109323162	109323186	CAGE_peak_16_at_SESN1_5end
chr6	109330702	109330763	CAGE_peak_1_at_SESN1_5end
chr6	109415597	109415600	CAGE_peak_13_at_SESN1_5end
chr6	109415604	109415617	CAGE_peak_8_at_SESN1_5end
chr6	109415651	109415667	CAGE_peak_4_at_SESN1_5end
chr6	109415669	109415716	CAGE_peak_3_at_SESN1_5end
chr6	109416251	109416281	CAGE_peak_7_at_SESN1_5end
chr6	109416323	109416361	CAGE_peak_5_at_SESN1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I109481	109481878	109484933	2.37	[{'connected_gene': 'ZBTB24', 'score': 557.9}, {'connected_gene': 'LOC105377935', 'score': 550.77}, {'connected_gene': 'SMPD2', 'score': 23.02}, {'connected_gene': 'ENSG00000260273', 'score': 11.98}, {'connected_gene': 'PPIL6', 'score': 6.24}, {'connected_gene': 'MICAL1', 'score': 3.57}, {'connected_gene': 'SESN1', 'score': 2.2}, {'connected_gene': 'AK9', 'score': 0.08}]
chr6	GH06I108871	108871638	108875773	1.34	[{'connected_gene': 'ARMC2', 'score': 26.64}, {'connected_gene': 'RNU6-653P', 'score': 10.92}, {'connected_gene': 'ARMC2-AS1', 'score': 10.45}, {'connected_gene': 'ZBTB24', 'score': 8.9}, {'connected_gene': 'SESN1', 'score': 2.05}, {'connected_gene': 'RPS12P13', 'score': 0.37}, {'connected_gene': 'ATP5MFP2', 'score': 0.29}]
chr6	GH06I109092	109092000	109097069	2.29	[{'connected_gene': 'SESN1', 'score': 550.77}, {'connected_gene': 'CEP57L1', 'score': 550.77}, {'connected_gene': 'ZBTB24', 'score': 30.89}, {'connected_gene': 'ENSG00000271730', 'score': 5.44}, {'connected_gene': 'GC06M109088', 'score': 0.44}]
chr6	GH06I108555	108555734	108567589	2.7	[{'connected_gene': 'FOXO3', 'score': 565.18}, {'connected_gene': 'PIR59886', 'score': 550.77}, {'connected_gene': 'ZBTB24', 'score': 54.91}, {'connected_gene': 'SMPD2', 'score': 20.13}, {'connected_gene': 'CD164', 'score': 11.11}, {'connected_gene': 'RNU6-653P', 'score': 10.69}, {'connected_gene': 'ENSG00000271730', 'score': 10.2}, {'connected_gene': 'SEC63', 'score': 9.89}, {'connected_gene': 'LINC00222', 'score': 5.03}, {'connected_gene': 'SESN1', 'score': 4.0}, {'connected_gene': 'OSTM1', 'score': 1.13}, {'connected_gene': 'GC06M108618', 'score': 0.22}]
chr6	GH06I109058	109058402	109061123	0.94	[{'connected_gene': 'RNU6-653P', 'score': 550.77}, {'connected_gene': 'GC06M109060', 'score': 550.77}, {'connected_gene': 'ZBTB24', 'score': 13.85}, {'connected_gene': 'GC06M109088', 'score': 0.31}, {'connected_gene': 'SESN1', 'score': 0.28}]
chr6	GH06I109079	109079461	109080787	0.69	[{'connected_gene': 'RNU6-653P', 'score': 11.71}, {'connected_gene': 'CD164', 'score': 10.29}, {'connected_gene': 'GC06M109088', 'score': 0.44}, {'connected_gene': 'SESN1', 'score': 0.39}, {'connected_gene': 'GC06M109060', 'score': 0.34}]
chr6	GH06I109082	109082200	109082601	0.74	[{'connected_gene': 'RNU6-653P', 'score': 11.71}, {'connected_gene': 'CD164', 'score': 10.29}, {'connected_gene': 'GC06M109088', 'score': 0.44}, {'connected_gene': 'SESN1', 'score': 0.39}, {'connected_gene': 'GC06M109060', 'score': 0.34}]
chr6	GH06I109071	109071030	109072252	0.66	[{'connected_gene': 'RNU6-653P', 'score': 0.39}, {'connected_gene': 'GC06M109060', 'score': 0.39}, {'connected_gene': 'GC06M109088', 'score': 0.37}, {'connected_gene': 'SESN1', 'score': 0.34}]
chr6	GH06I109073	109073201	109073800	0.89	[{'connected_gene': 'RNU6-653P', 'score': 0.39}, {'connected_gene': 'GC06M109060', 'score': 0.39}, {'connected_gene': 'GC06M109088', 'score': 0.37}, {'connected_gene': 'SESN1', 'score': 0.34}]
chr6	GH06I109068	109068001	109068200	0.2	[{'connected_gene': 'RNU6-653P', 'score': 0.44}, {'connected_gene': 'GC06M109060', 'score': 0.44}, {'connected_gene': 'GC06M109088', 'score': 0.34}, {'connected_gene': 'SESN1', 'score': 0.31}]
chr6	GH06I109019	109019502	109021021	0.31	[{'connected_gene': 'RNU6-653P', 'score': 12.46}, {'connected_gene': 'ENSG00000271730', 'score': 6.1}, {'connected_gene': 'GC06P109009', 'score': 0.39}, {'connected_gene': 'GC06M109060', 'score': 0.28}, {'connected_gene': 'SESN1', 'score': 0.19}]
chr6	GH06I109070	109070201	109070400	0.31	[{'connected_gene': 'RNU6-653P', 'score': 0.39}, {'connected_gene': 'GC06M109060', 'score': 0.39}, {'connected_gene': 'GC06M109088', 'score': 0.37}, {'connected_gene': 'SESN1', 'score': 0.34}]
chr6	GH06I109062	109062001	109062200	0.2	[{'connected_gene': 'RNU6-653P', 'score': 0.77}, {'connected_gene': 'GC06M109060', 'score': 0.77}, {'connected_gene': 'GC06M109088', 'score': 0.31}, {'connected_gene': 'SESN1', 'score': 0.29}]
chr6	GH06I109056	109056200	109056400	0.43	[{'connected_gene': 'RNU6-653P', 'score': 0.77}, {'connected_gene': 'GC06M109060', 'score': 0.77}, {'connected_gene': 'SESN1', 'score': 0.28}, {'connected_gene': 'GC06P109009', 'score': 0.25}]
chr6	GH06I109035	109035941	109037356	0.63	[{'connected_gene': 'RNU6-653P', 'score': 13.02}, {'connected_gene': 'ARMC2-AS1', 'score': 10.65}, {'connected_gene': 'ARMC2', 'score': 9.9}, {'connected_gene': 'ENSG00000271730', 'score': 6.07}, {'connected_gene': 'GC06M109060', 'score': 0.34}, {'connected_gene': 'GC06P109009', 'score': 0.31}, {'connected_gene': 'SESN1', 'score': 0.22}]
chr6	GH06I108989	108989546	108990691	0.67	[{'connected_gene': 'RNU6-653P', 'score': 10.89}, {'connected_gene': 'ARMC2-AS1', 'score': 10.5}, {'connected_gene': 'PIR36369', 'score': 0.44}, {'connected_gene': 'ENSG00000271730', 'score': 0.44}, {'connected_gene': 'GC06P108981', 'score': 0.44}, {'connected_gene': 'SESN1', 'score': 0.15}, {'connected_gene': 'ARMC2', 'score': 0.11}]
chr6	GH06I108987	108987677	108989389	0.2	[{'connected_gene': 'RNU6-653P', 'score': 10.87}, {'connected_gene': 'ARMC2-AS1', 'score': 10.5}, {'connected_gene': 'ENSG00000271730', 'score': 6.19}, {'connected_gene': 'PIR36369', 'score': 0.44}, {'connected_gene': 'GC06P108981', 'score': 0.44}, {'connected_gene': 'SESN1', 'score': 0.14}, {'connected_gene': 'ARMC2', 'score': 0.11}]
chr6	GH06I109012	109012224	109015903	0.78	[{'connected_gene': 'RNU6-653P', 'score': 12.14}, {'connected_gene': 'ARMC2-AS1', 'score': 9.94}, {'connected_gene': 'ENSG00000271730', 'score': 6.16}, {'connected_gene': 'GC06P109009', 'score': 0.77}, {'connected_gene': 'GC06M109060', 'score': 0.25}, {'connected_gene': 'SESN1', 'score': 0.18}]
chr6	GH06I109050	109050138	109050400	0.82	[{'connected_gene': 'ARMC2-AS1', 'score': 10.33}, {'connected_gene': 'RNU6-653P', 'score': 0.44}, {'connected_gene': 'GC06M109060', 'score': 0.44}, {'connected_gene': 'SESN1', 'score': 0.26}, {'connected_gene': 'GC06P109009', 'score': 0.26}]
chr6	GH06I109006	109006574	109011610	2.22	[{'connected_gene': 'GC06P109009', 'score': 550.77}, {'connected_gene': 'SESN1', 'score': 550.17}, {'connected_gene': 'RNU6-653P', 'score': 12.1}, {'connected_gene': 'ARMC2-AS1', 'score': 10.46}, {'connected_gene': 'ENSG00000271730', 'score': 6.15}]
chr6	GH06I109076	109076018	109076167	0.38	[{'connected_gene': 'GC06M109088', 'score': 0.39}, {'connected_gene': 'SESN1', 'score': 0.37}, {'connected_gene': 'RNU6-653P', 'score': 0.37}, {'connected_gene': 'GC06M109060', 'score': 0.37}]
chr6	GH06I109001	109001385	109003122	0.89	[{'connected_gene': 'ENSG00000271730', 'score': 6.62}, {'connected_gene': 'GC06P109009', 'score': 0.44}, {'connected_gene': 'SESN1', 'score': 0.16}]
chr6	GH06I109087	109087687	109088961	0.65	[{'connected_gene': 'GC06M109088', 'score': 550.77}, {'connected_gene': 'RNU6-653P', 'score': 11.28}, {'connected_gene': 'CD164', 'score': 10.2}, {'connected_gene': 'ENSG00000271730', 'score': 5.45}, {'connected_gene': 'SESN1', 'score': 0.44}, {'connected_gene': 'GC06M109060', 'score': 0.31}]