PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000446702	[[1134259, 1134804], [1189610, 1189747], [1262370, 1262497], [1269501, 1269677], [1320096, 1320192], [1337284, 1337488], [1339572, 1339675], [1363333, 1363518], [1367498, 1367635], [1369140, 1369270], [1371468, 1371619], [1394007, 1394135], [1413982, 1414158], [1414521, 1414639], [1415287, 1415446], [1415607, 1415757], [1418688, 1418759], [1424625, 1424860], [1424976, 1425092], [1427294, 1427481], [1443116, 1443229], [1444001, 1444170], [1445001, 1445901]]	[[1189692, 1189747], [1262370, 1262497], [1269501, 1269677], [1320096, 1320192], [1337284, 1337488], [1339572, 1339675], [1363333, 1363518], [1367498, 1367635], [1369140, 1369270], [1371468, 1371619], [1394007, 1394135], [1413982, 1414158], [1414521, 1414639], [1415287, 1415446], [1415607, 1415757], [1418688, 1418759], [1424625, 1424860], [1424976, 1425092], [1427294, 1427481], [1443116, 1443229], [1444001, 1444170], [1445001, 1445102]]
ENST00000397479	[[1134341, 1134804], [1262370, 1262497], [1269501, 1269677], [1320096, 1320192], [1337284, 1337488], [1339572, 1339675], [1363333, 1363518], [1367498, 1367635], [1369140, 1369270], [1371468, 1371619], [1394007, 1394135], [1413982, 1414158], [1414521, 1414639], [1415287, 1415446], [1415607, 1415757], [1418688, 1418759], [1424625, 1424860], [1424976, 1425092], [1427294, 1427481], [1443116, 1443229], [1444001, 1444170], [1445001, 1445126]]	[[1134419, 1134611]]
ENST00000539053	[[1134341, 1134804], [1262370, 1262497], [1269501, 1269677], [1320096, 1320192], [1337284, 1337488], [1339572, 1339675], [1363333, 1363518], [1367498, 1367635], [1369140, 1369270], [1371468, 1371619], [1394007, 1394135], [1413982, 1414158], [1414521, 1414639], [1415287, 1415446], [1415607, 1415757], [1418688, 1418759], [1424625, 1424860], [1424976, 1425092], [1427294, 1427481], [1443116, 1443229], [1444001, 1444170], [1445001, 1445126]]	[[1269535, 1269677], [1320096, 1320192], [1337284, 1337488], [1339572, 1339675], [1363333, 1363518], [1367498, 1367635], [1369140, 1369270], [1371468, 1371619], [1394007, 1394135], [1413982, 1414158], [1414521, 1414639], [1415287, 1415446], [1415607, 1415757], [1418688, 1418759], [1424625, 1424860], [1424976, 1425092], [1427294, 1427481], [1443116, 1443229], [1444001, 1444170], [1445001, 1445102]]
ENST00000350110	[[1134344, 1134813], [1189610, 1189747], [1262370, 1262497], [1269501, 1269677], [1320096, 1320192], [1337284, 1337488], [1339572, 1339675], [1363333, 1363518], [1367498, 1367635], [1369140, 1369270], [1371468, 1371619], [1394007, 1394135], [1413982, 1414158], [1414521, 1414639], [1415287, 1415446], [1415607, 1415757], [1418688, 1418759], [1424625, 1424860], [1424976, 1425092], [1427294, 1427481], [1443116, 1443229], [1444001, 1444170], [1445001, 1445278]]	[[1189692, 1189747], [1262370, 1262497], [1269501, 1269677], [1320096, 1320192], [1337284, 1337488], [1339572, 1339675], [1363333, 1363518], [1367498, 1367635], [1369140, 1369270], [1371468, 1371619], [1394007, 1394135], [1413982, 1414158], [1414521, 1414639], [1415287, 1415446], [1415607, 1415757], [1418688, 1418759], [1424625, 1424860], [1424976, 1425092], [1427294, 1427481], [1443116, 1443229], [1444001, 1444170], [1445001, 1445102]]
ENST00000413210	[[1134405, 1134804], [1169950, 1170061], [1189610, 1189651]]	[[1134419, 1134611]]
ENST00000394261	[[1134707, 1134804], [1189610, 1189747], [1214887, 1215002], [1262370, 1262497], [1269501, 1269677], [1320096, 1320192], [1337284, 1337488], [1339572, 1340053]]	[[1189703, 1189747], [1214887, 1214969]]
ENST00000485257	[[1442968, 1443229], [1444001, 1444485]]	None
NM_001289081	[[1134341, 1134804], [1262370, 1262497], [1269501, 1269677], [1320096, 1320192], [1337284, 1337488], [1339572, 1339675], [1363333, 1363518], [1367498, 1367635], [1369140, 1369270], [1371468, 1371619], [1394007, 1394135], [1413982, 1414158], [1414521, 1414639], [1415287, 1415446], [1415607, 1415757], [1418688, 1418759], [1424625, 1424860], [1424976, 1425092], [1427294, 1427481], [1443116, 1443229], [1444001, 1444170], [1445001, 1445294]]	[[1269535, 1269677], [1320096, 1320192], [1337284, 1337488], [1339572, 1339675], [1363333, 1363518], [1367498, 1367635], [1369140, 1369270], [1371468, 1371619], [1394007, 1394135], [1413982, 1414158], [1414521, 1414639], [1415287, 1415446], [1415607, 1415757], [1418688, 1418759], [1424625, 1424860], [1424976, 1425092], [1427294, 1427481], [1443116, 1443229], [1444001, 1444170], [1445001, 1445102]]
NM_001289080	[[1134341, 1134804], [1189610, 1189747], [1262370, 1262497], [1269501, 1269677], [1320096, 1320192], [1337284, 1337488], [1339572, 1339675], [1363333, 1363518], [1367498, 1367635], [1369140, 1369270], [1371468, 1371619], [1394007, 1394135], [1413982, 1414158], [1414521, 1414639], [1415287, 1415446], [1415607, 1415757], [1418688, 1418759], [1424625, 1424860], [1424976, 1425092], [1427294, 1427481], [1443116, 1443229], [1444001, 1444170], [1445001, 1445294]]	[[1189692, 1189747], [1262370, 1262497], [1269501, 1269677], [1320096, 1320192], [1337284, 1337488], [1339572, 1339675], [1363333, 1363518], [1367498, 1367635], [1369140, 1369270], [1371468, 1371619], [1394007, 1394135], [1413982, 1414158], [1414521, 1414639], [1415287, 1415446], [1415607, 1415757], [1418688, 1418759], [1424625, 1424860], [1424976, 1425092], [1427294, 1427481], [1443116, 1443229], [1444001, 1444170], [1445001, 1445102]]
NM_014461	[[1134341, 1134813], [1189610, 1189747], [1262370, 1262497], [1269501, 1269677], [1320096, 1320192], [1337284, 1337488], [1339572, 1339675], [1363333, 1363518], [1367498, 1367635], [1369140, 1369270], [1371468, 1371619], [1394007, 1394135], [1413982, 1414158], [1414521, 1414639], [1415287, 1415446], [1415607, 1415757], [1418688, 1418759], [1424625, 1424860], [1424976, 1425092], [1427294, 1427481], [1443116, 1443229], [1444001, 1444170], [1445001, 1445294]]	[[1189692, 1189747], [1262370, 1262497], [1269501, 1269677], [1320096, 1320192], [1337284, 1337488], [1339572, 1339675], [1363333, 1363518], [1367498, 1367635], [1369140, 1369270], [1371468, 1371619], [1394007, 1394135], [1413982, 1414158], [1414521, 1414639], [1415287, 1415446], [1415607, 1415757], [1418688, 1418759], [1424625, 1424860], [1424976, 1425092], [1427294, 1427481], [1443116, 1443229], [1444001, 1444170], [1445001, 1445102]]

Promoter

Chrom	Start	End	Description
chr3	1134339	1134350	CAGE_peak_5_at_CNTN6_5end
chr3	1134366	1134376	CAGE_peak_8_at_CNTN6_5end
chr3	1134400	1134417	CAGE_peak_3_at_CNTN6_5end
chr3	1134589	1134643	CAGE_peak_2_at_CNTN6_5end
chr3	1134664	1134715	CAGE_peak_1_at_CNTN6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I001086	1086989	1087959	0.76	[{'connected_gene': 'CNTN6', 'score': 10.53}, {'connected_gene': 'RN7SL120P', 'score': 0.34}, {'connected_gene': 'GC03P001114', 'score': 0.31}]
chr3	GH03I001092	1092463	1093498	1.01	[{'connected_gene': 'CNTN6', 'score': 580.51}, {'connected_gene': 'GC03P001114', 'score': 0.34}, {'connected_gene': 'RN7SL120P', 'score': 0.31}]
chr3	GH03I001117	1117790	1118707	0.52	[{'connected_gene': 'CNTN6', 'score': 17.47}, {'connected_gene': 'GC03P001114', 'score': 0.77}, {'connected_gene': 'LOC105376924', 'score': 0.25}]
chr3	GH03I001183	1183737	1183886	0.46	[{'connected_gene': 'CNTN6', 'score': 10.08}, {'connected_gene': 'LOC105376923', 'score': 0.39}, {'connected_gene': 'LOC105376924', 'score': 0.37}, {'connected_gene': 'GC03P001114', 'score': 0.2}]
chr3	GH03I001197	1197197	1197209	0.2	[{'connected_gene': 'LOC105376923', 'score': 0.77}, {'connected_gene': 'GC03P001114', 'score': 0.18}, {'connected_gene': 'CNTN6', 'score': 0.09}, {'connected_gene': 'CRB3P1', 'score': 0.08}]