PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000295379	[[69092612, 69093703], [69098156, 69098649]]	[[69092762, 69093703], [69098156, 69098490]]
NM_014482	[[69088047, 69093703], [69098156, 69098649]]	[[69092762, 69093703], [69098156, 69098490]]

Promoter

Chrom	Start	End	Description
chr2	69098513	69098537	CAGE_peak_1_at_BMP10_5end
chr2	69098540	69098553	CAGE_peak_2_at_BMP10_5end
chr2	69098566	69098571	CAGE_peak_3_at_BMP10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I068925	68925409	68925558	0.89	[{'connected_gene': 'FBXO48', 'score': 11.36}, {'connected_gene': 'APLF', 'score': 11.36}, {'connected_gene': 'LINC01888', 'score': 11.19}, {'connected_gene': 'BMP10', 'score': 10.98}, {'connected_gene': 'ANTXR1', 'score': 10.13}, {'connected_gene': 'GKN1', 'score': 9.81}, {'connected_gene': 'GKN3P', 'score': 0.77}, {'connected_gene': 'GKN2', 'score': 0.31}]
chr2	GH02I068924	68924181	68925383	0.67	[{'connected_gene': 'FBXO48', 'score': 11.36}, {'connected_gene': 'APLF', 'score': 11.36}, {'connected_gene': 'LINC01888', 'score': 11.19}, {'connected_gene': 'BMP10', 'score': 10.98}, {'connected_gene': 'ANTXR1', 'score': 10.13}, {'connected_gene': 'GKN1', 'score': 9.81}, {'connected_gene': 'GKN3P', 'score': 0.77}, {'connected_gene': 'GKN2', 'score': 0.31}]
chr2	GH02I068805	68805642	68810625	1.51	[{'connected_gene': 'PLEK', 'score': 15.67}, {'connected_gene': 'LINC01888', 'score': 13.25}, {'connected_gene': 'BMP10', 'score': 10.69}, {'connected_gene': 'WDR92', 'score': 9.82}, {'connected_gene': 'ARHGAP25', 'score': 8.53}, {'connected_gene': 'FBXO48', 'score': 6.48}, {'connected_gene': 'LINC01890', 'score': 5.09}, {'connected_gene': 'APLF', 'score': 2.72}, {'connected_gene': 'LOC105374790', 'score': 0.25}]
chr2	GH02I068798	68798514	68800702	1.13	[{'connected_gene': 'PLEK', 'score': 12.97}, {'connected_gene': 'LINC01888', 'score': 12.33}, {'connected_gene': 'BMP10', 'score': 10.67}, {'connected_gene': 'LINC01890', 'score': 5.19}, {'connected_gene': 'FBXO48', 'score': 4.19}, {'connected_gene': 'ARHGAP25', 'score': 2.7}, {'connected_gene': 'APLF', 'score': 1.14}, {'connected_gene': 'LOC105374790', 'score': 0.28}]
chr2	GH02I068849	68849265	68851029	0.89	[{'connected_gene': 'BMP10', 'score': 11.86}, {'connected_gene': 'GKN2', 'score': 10.07}, {'connected_gene': 'ANTXR1', 'score': 9.95}, {'connected_gene': 'LINC01890', 'score': 5.57}]
chr2	GH02I068906	68906735	68909599	1.33	[{'connected_gene': 'BMP10', 'score': 11.93}, {'connected_gene': 'LINC01888', 'score': 11.8}, {'connected_gene': 'FBXO48', 'score': 11.05}, {'connected_gene': 'APLF', 'score': 11.05}, {'connected_gene': 'GKN2', 'score': 10.34}, {'connected_gene': 'GKN3P', 'score': 0.39}, {'connected_gene': 'LOC105374792', 'score': 0.31}]
chr2	GH02I068900	68900267	68901478	0.56	[{'connected_gene': 'BMP10', 'score': 11.96}, {'connected_gene': 'LINC01888', 'score': 11.82}, {'connected_gene': 'GKN2', 'score': 10.31}, {'connected_gene': 'LOC105374792', 'score': 0.37}, {'connected_gene': 'GKN3P', 'score': 0.34}]
chr2	GH02I068872	68872022	68872944	0.31	[{'connected_gene': 'BMP10', 'score': 550.77}, {'connected_gene': 'LINC01888', 'score': 10.37}, {'connected_gene': 'LOC105374792', 'score': 0.44}]
chr2	GH02I068873	68872948	68873378	0.2	[{'connected_gene': 'BMP10', 'score': 550.77}, {'connected_gene': 'LINC01888', 'score': 10.37}, {'connected_gene': 'LOC105374792', 'score': 0.44}]
chr2	GH02I068838	68838811	68839761	0.71	[{'connected_gene': 'BMP10', 'score': 10.73}, {'connected_gene': 'LINC01890', 'score': 0.77}]
chr2	GH02I068845	68845347	68848448	0.46	[{'connected_gene': 'BMP10', 'score': 11.86}, {'connected_gene': 'LINC01890', 'score': 7.82}]
chr2	GH02I068870	68870908	68871622	0.43	[{'connected_gene': 'BMP10', 'score': 550.77}, {'connected_gene': 'LINC01890', 'score': 0.29}]
chr2	GH02I068861	68861469	68861643	0.36	[{'connected_gene': 'LINC01888', 'score': 11.76}, {'connected_gene': 'ARHGAP25', 'score': 4.73}, {'connected_gene': 'PLEK', 'score': 4.64}, {'connected_gene': 'APLF', 'score': 2.77}, {'connected_gene': 'FBXO48', 'score': 1.51}, {'connected_gene': 'BMP10', 'score': 0.44}, {'connected_gene': 'LINC01890', 'score': 0.34}]
chr2	GH02I068853	68853397	68853890	0.64	[{'connected_gene': 'LINC01888', 'score': 11.53}, {'connected_gene': 'ANTXR1', 'score': 9.95}, {'connected_gene': 'GKN2', 'score': 9.53}, {'connected_gene': 'LINC01890', 'score': 7.97}, {'connected_gene': 'BMP10', 'score': 0.37}]
chr2	GH02I068857	68857169	68858469	1	[{'connected_gene': 'LINC01888', 'score': 11.76}, {'connected_gene': 'PLEK', 'score': 11.23}, {'connected_gene': 'FBXO48', 'score': 10.18}, {'connected_gene': 'GKN2', 'score': 9.61}, {'connected_gene': 'APLF', 'score': 6.09}, {'connected_gene': 'BMP10', 'score': 0.39}, {'connected_gene': 'LINC01890', 'score': 0.34}]
chr2	GH02I068874	68873416	68874141	0.2	[{'connected_gene': 'LINC01888', 'score': 10.37}, {'connected_gene': 'ANXA4', 'score': 5.34}, {'connected_gene': 'BMP10', 'score': 0.77}, {'connected_gene': 'LOC105374792', 'score': 0.44}]
chr2	GH02I068865	68865631	68866981	0.38	[{'connected_gene': 'LINC01888', 'score': 11.74}, {'connected_gene': 'ANXA4', 'score': 5.33}, {'connected_gene': 'BMP10', 'score': 0.44}, {'connected_gene': 'LINC01890', 'score': 0.31}]
chr2	GH02I068794	68794072	68798000	0.92	[{'connected_gene': 'LINC01888', 'score': 12.25}, {'connected_gene': 'BMP10', 'score': 10.66}, {'connected_gene': 'ANXA4', 'score': 4.86}, {'connected_gene': 'LOC105374790', 'score': 0.29}, {'connected_gene': 'ARHGAP25', 'score': 0.13}]
chr2	GH02I068864	68864649	68864984	0.22	[{'connected_gene': 'LINC01888', 'score': 11.74}, {'connected_gene': 'BMP10', 'score': 3.41}, {'connected_gene': 'LINC01890', 'score': 0.31}]
chr2	GH02I068868	68868975	68869731	0.2	[{'connected_gene': 'LINC01888', 'score': 10.33}, {'connected_gene': 'BMP10', 'score': 0.77}, {'connected_gene': 'LINC01890', 'score': 0.29}]
chr2	GH02I068802	68802686	68805601	0.38	[{'connected_gene': 'LINC01888', 'score': 12.69}, {'connected_gene': 'BMP10', 'score': 9.92}, {'connected_gene': 'C1D', 'score': 5.41}, {'connected_gene': 'LOC105374790', 'score': 0.26}, {'connected_gene': 'ARHGAP25', 'score': 0.13}]
chr2	GH02I068877	68877253	68878891	0.78	[{'connected_gene': 'LOC105374792', 'score': 0.77}, {'connected_gene': 'BMP10', 'score': 0.44}]
chr2	GH02I068879	68879305	68881111	0.38	[{'connected_gene': 'LOC105374792', 'score': 550.77}, {'connected_gene': 'LINC01888', 'score': 10.69}, {'connected_gene': 'GKN1', 'score': 9.58}, {'connected_gene': 'ANTXR1', 'score': 9.38}, {'connected_gene': 'BMP10', 'score': 0.44}]
chr2	GH02I068836	68836801	68838201	1.1	[{'connected_gene': 'LINC01890', 'score': 561.2}, {'connected_gene': 'BMP10', 'score': 10.73}, {'connected_gene': 'LINC01888', 'score': 0.44}]