PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000290429	[[43528211, 43529492], [43533086, 43533304], [43537167, 43537255], [43538931, 43539400]]	[[43529048, 43529492], [43533086, 43533304], [43537167, 43537255], [43538931, 43539354]]
ENST00000327555	[[43528885, 43529492], [43537167, 43537255], [43538931, 43539370]]	[[43529460, 43529492], [43537167, 43537255], [43538931, 43539354]]
ENST00000608052	[[43536835, 43537255], [43538931, 43538970]]	[[43537030, 43537255], [43538931, 43538970]]
ENST00000464244	[[43537061, 43537255], [43538931, 43539286]]	None
NR_046423	[[43528211, 43529492], [43537167, 43537255], [43538897, 43539403]]	None
NM_173467	[[43528211, 43529492], [43533086, 43533304], [43537167, 43537255], [43538931, 43539403]]	[[43529048, 43529492], [43533086, 43533304], [43537167, 43537255], [43538931, 43539354]]
NM_014507	[[43528211, 43529492], [43537167, 43537255], [43538931, 43539403]]	[[43529460, 43529492], [43537167, 43537255], [43538931, 43539354]]

Promoter

Chrom	Start	End	Description
chr22	43539346	43539410	CAGE_peak_1_at_MCAT_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr22	GH22I043376	43376814	43379034	1.06	[{'connected_gene': 'SCUBE1', 'score': 12.52}, {'connected_gene': 'LOC101927447', 'score': 12.37}, {'connected_gene': 'MPPED1', 'score': 11.77}, {'connected_gene': 'ENSG00000234892', 'score': 11.29}, {'connected_gene': 'MCAT', 'score': 5.02}, {'connected_gene': 'LOC105373053', 'score': 0.39}]
chr22	GH22I043163	43163094	43164540	0.89	[{'connected_gene': 'TSPO', 'score': 21.21}, {'connected_gene': 'MCAT', 'score': 13.21}, {'connected_gene': 'TTLL12', 'score': 0.34}]
chr22	GH22I043168	43168204	43169169	0.4	[{'connected_gene': 'TSPO', 'score': 13.15}, {'connected_gene': 'MCAT', 'score': 12.5}, {'connected_gene': 'TTLL12', 'score': 0.37}]
chr22	GH22I043145	43145075	43149223	1.09	[{'connected_gene': 'TSPO', 'score': 21.6}, {'connected_gene': 'TTLL12', 'score': 4.99}, {'connected_gene': 'MCAT', 'score': 0.77}]
chr22	GH22I043110	43110475	43112145	2.01	[{'connected_gene': 'BIK', 'score': 564.19}, {'connected_gene': 'RPL5P34', 'score': 16.29}, {'connected_gene': 'POLDIP3', 'score': 12.91}, {'connected_gene': 'MCAT', 'score': 11.59}, {'connected_gene': 'ARFGAP3', 'score': 10.51}, {'connected_gene': 'RN7SKP80', 'score': 10.35}]
chr22	GH22I043121	43121113	43124663	0.49	[{'connected_gene': 'BIK', 'score': 9.15}, {'connected_gene': 'MCAT', 'score': 8.62}, {'connected_gene': 'TTLL12', 'score': 7.82}, {'connected_gene': 'TSPO', 'score': 7.5}]
chr22	GH22I043119	43119999	43120240	0.2	[{'connected_gene': 'BIK', 'score': 5.78}, {'connected_gene': 'MCAT', 'score': 0.34}]
chr22	GH22I043115	43115981	43116400	0.31	[{'connected_gene': 'BIK', 'score': 0.44}, {'connected_gene': 'MCAT', 'score': 0.31}]
chr22	GH22I043118	43118381	43119000	1.07	[{'connected_gene': 'BIK', 'score': 5.88}, {'connected_gene': 'MCAT', 'score': 0.34}]
chr22	GH22I043120	43120425	43120866	0.2	[{'connected_gene': 'BIK', 'score': 5.75}, {'connected_gene': 'MCAT', 'score': 0.34}]
chr22	GH22I042685	42685565	42690470	1.55	[{'connected_gene': 'A4GALT', 'score': 14.11}, {'connected_gene': 'CYB5R3', 'score': 11.97}, {'connected_gene': 'SERHL2', 'score': 7.2}, {'connected_gene': 'TSPO', 'score': 6.13}, {'connected_gene': 'MCAT', 'score': 1.59}, {'connected_gene': 'GC22M042670', 'score': 0.37}]
chr22	GH22I043126	43125000	43125476	0.7	[{'connected_gene': 'RPL5P34', 'score': 12.22}, {'connected_gene': 'RN7SKP80', 'score': 10.98}, {'connected_gene': 'POLDIP3', 'score': 9.96}, {'connected_gene': 'BIK', 'score': 0.39}, {'connected_gene': 'MCAT', 'score': 0.37}]
chr22	GH22I043105	43105415	43105550	0.2	[{'connected_gene': 'MCAT', 'score': 12.06}, {'connected_gene': 'TSPO', 'score': 11.45}, {'connected_gene': 'ARFGAP3', 'score': 9.51}, {'connected_gene': 'GC22M043099', 'score': 0.44}, {'connected_gene': 'BIK', 'score': 0.44}]
chr22	GH22I043103	43103644	43105239	1.6	[{'connected_gene': 'MCAT', 'score': 12.06}, {'connected_gene': 'TSPO', 'score': 11.89}, {'connected_gene': 'CYB5R3', 'score': 10.74}, {'connected_gene': 'ARFGAP3', 'score': 9.77}, {'connected_gene': 'BIK', 'score': 8.9}, {'connected_gene': 'CYP2D7', 'score': 4.92}, {'connected_gene': 'GC22M043099', 'score': 0.44}]
chr22	GH22I043136	43136355	43136544	0.69	[{'connected_gene': 'MCAT', 'score': 0.44}, {'connected_gene': 'BIK', 'score': 0.31}]
chr22	GH22I043135	43135536	43136084	0.31	[{'connected_gene': 'MCAT', 'score': 0.44}, {'connected_gene': 'BIK', 'score': 0.31}]
chr22	GH22I043133	43133535	43133684	0.2	[{'connected_gene': 'MCAT', 'score': 0.44}, {'connected_gene': 'BIK', 'score': 0.34}]
chr22	GH22I043093	43093606	43094811	0.86	[{'connected_gene': 'MCAT', 'score': 11.68}, {'connected_gene': 'ARFGAP3', 'score': 10.33}, {'connected_gene': 'LOC100506679', 'score': 4.48}, {'connected_gene': 'GC22P043093', 'score': 0.77}, {'connected_gene': 'GC22M043099', 'score': 0.44}]
chr22	GH22I043385	43385795	43385964	0.76	[{'connected_gene': 'MCAT', 'score': 5.53}, {'connected_gene': 'LOC105373053', 'score': 0.44}, {'connected_gene': 'SCUBE1', 'score': 0.26}]
chr22	GH22I043142	43142400	43144229	2.23	[{'connected_gene': 'MCAT', 'score': 557.22}, {'connected_gene': 'LOC100506679', 'score': 11.91}, {'connected_gene': 'RRP7BP', 'score': 11.06}, {'connected_gene': 'TTLL1', 'score': 10.65}, {'connected_gene': 'BIK', 'score': 9.13}, {'connected_gene': 'TSPO', 'score': 7.85}, {'connected_gene': 'TTLL12', 'score': 4.83}]
chr22	GH22I043010	43010530	43012948	0.97	[{'connected_gene': 'ARFGAP3', 'score': 15.05}, {'connected_gene': 'MCAT', 'score': 10.51}, {'connected_gene': 'PACSIN2', 'score': 9.67}, {'connected_gene': 'PIR35633', 'score': 0.31}]
chr22	GH22I042999	42999602	43005902	1.27	[{'connected_gene': 'ARFGAP3', 'score': 27.19}, {'connected_gene': 'LOC100506679', 'score': 13.38}, {'connected_gene': 'RRP7BP', 'score': 12.3}, {'connected_gene': 'ENSG00000261251', 'score': 11.4}, {'connected_gene': 'MCAT', 'score': 10.51}, {'connected_gene': 'A4GALT', 'score': 10.11}, {'connected_gene': 'PACSIN2', 'score': 9.88}, {'connected_gene': 'PIR35633', 'score': 0.37}]
chr22	GH22I042867	42867401	42868201	1.37	[{'connected_gene': 'ARFGAP3', 'score': 12.97}, {'connected_gene': 'LOC100506679', 'score': 10.89}, {'connected_gene': 'MCAT', 'score': 10.06}, {'connected_gene': 'ENSG00000227370', 'score': 4.42}, {'connected_gene': 'LOC101927393', 'score': 0.77}, {'connected_gene': 'PACSIN2', 'score': 0.11}]
chr22	GH22I042868	42868579	42869881	0.86	[{'connected_gene': 'ARFGAP3', 'score': 14.62}, {'connected_gene': 'LOC100506679', 'score': 10.9}, {'connected_gene': 'MCAT', 'score': 10.06}, {'connected_gene': 'LOC101927393', 'score': 0.77}, {'connected_gene': 'PACSIN2', 'score': 0.11}]
chr22	GH22I042866	42866037	42866740	0.31	[{'connected_gene': 'ARFGAP3', 'score': 14.59}, {'connected_gene': 'LOC100506679', 'score': 11.16}, {'connected_gene': 'MCAT', 'score': 10.09}, {'connected_gene': 'LOC101927393', 'score': 0.44}, {'connected_gene': 'PACSIN2', 'score': 0.11}]
chr22	GH22I042854	42854726	42858346	2.21	[{'connected_gene': 'ARFGAP3', 'score': 569.96}, {'connected_gene': 'LOC100506679', 'score': 22.66}, {'connected_gene': 'TTLL1', 'score': 14.15}, {'connected_gene': 'PACSIN2', 'score': 12.8}, {'connected_gene': 'RRP7BP', 'score': 11.1}, {'connected_gene': 'MCAT', 'score': 4.98}, {'connected_gene': 'LOC692246', 'score': 0.77}]
chr22	GH22I043066	43066853	43068204	1.07	[{'connected_gene': 'TTLL1', 'score': 13.04}, {'connected_gene': 'RPS25P10', 'score': 13.04}, {'connected_gene': 'BIK', 'score': 11.5}, {'connected_gene': 'A4GALT', 'score': 11.05}, {'connected_gene': 'MCAT', 'score': 10.93}, {'connected_gene': 'PIR49217', 'score': 0.37}, {'connected_gene': 'GC22P043084', 'score': 0.37}, {'connected_gene': 'GC22P043086', 'score': 0.37}, {'connected_gene': 'GC22P043085', 'score': 0.37}, {'connected_gene': 'LOC100506679', 'score': 0.31}]
chr22	GH22I043122	43119315	43119464	0.77	[{'connected_gene': 'TTLL12', 'score': 5.13}, {'connected_gene': 'BIK', 'score': 0.44}, {'connected_gene': 'MCAT', 'score': 0.34}]
chr22	GH22I043266	43266035	43268315	0.31	[{'connected_gene': 'TTLL12', 'score': 5.36}, {'connected_gene': 'MCAT', 'score': 4.59}, {'connected_gene': 'GC22M043260', 'score': 0.77}, {'connected_gene': 'LOC101927447', 'score': 0.44}, {'connected_gene': 'SCUBE1', 'score': 0.18}]
chr22	GH22I043182	43182567	43185080	1.31	[{'connected_gene': 'TTLL12', 'score': 27.03}, {'connected_gene': 'LOC105373051', 'score': 12.04}, {'connected_gene': 'MCAT', 'score': 11.96}, {'connected_gene': 'TSPO', 'score': 0.29}]
chr22	GH22I043226	43226305	43227294	0.58	[{'connected_gene': 'TTLL12', 'score': 12.77}, {'connected_gene': 'LOC101927447', 'score': 10.81}, {'connected_gene': 'SCUBE1', 'score': 10.69}, {'connected_gene': 'MCAT', 'score': 10.3}, {'connected_gene': 'MPPED1', 'score': 10.24}, {'connected_gene': 'ENSG00000234892', 'score': 0.44}, {'connected_gene': 'LOC105373051', 'score': 0.39}]
chr22	GH22I043012	43012992	43016188	2.5	[{'connected_gene': 'PACSIN2', 'score': 565.99}, {'connected_gene': 'POLDIP3', 'score': 11.84}, {'connected_gene': 'RPL5P34', 'score': 11.49}, {'connected_gene': 'ARFGAP3', 'score': 10.77}, {'connected_gene': 'NAGA', 'score': 10.56}, {'connected_gene': 'MCAT', 'score': 10.52}, {'connected_gene': 'PIR35633', 'score': 0.31}]
chr22	GH22I043006	43006728	43010272	1.78	[{'connected_gene': 'PACSIN2', 'score': 550.44}, {'connected_gene': 'ARFGAP3', 'score': 16.63}, {'connected_gene': 'MCAT', 'score': 10.51}, {'connected_gene': 'PIR35633', 'score': 0.34}]
chr22	GH22I043125	43125734	43130275	1.32	[{'connected_gene': 'RN7SKP80', 'score': 22.02}, {'connected_gene': 'RPL5P34', 'score': 19.55}, {'connected_gene': 'POLDIP3', 'score': 14.84}, {'connected_gene': 'BIK', 'score': 10.02}, {'connected_gene': 'MCAT', 'score': 8.4}, {'connected_gene': 'TTLL12', 'score': 6.99}]
chr22	GH22I043113	43113622	43115484	0.84	[{'connected_gene': 'ENSG00000273366', 'score': 4.74}, {'connected_gene': 'MCAT', 'score': 4.72}, {'connected_gene': 'BIK', 'score': 0.77}]
chr22	GH22I043099	43099855	43102478	0.85	[{'connected_gene': 'GC22M043099', 'score': 550.77}, {'connected_gene': 'TTLL1', 'score': 17.91}, {'connected_gene': 'LOC100506679', 'score': 13.06}, {'connected_gene': 'TSPO', 'score': 11.88}, {'connected_gene': 'MCAT', 'score': 11.7}, {'connected_gene': 'CYB5R3', 'score': 10.74}, {'connected_gene': 'ARFGAP3', 'score': 10.34}, {'connected_gene': 'BIK', 'score': 8.15}]