PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000264428	[[157997208, 157997449], [157999147, 157999298], [158041707, 158041814], [158043481, 158043549], [158057620, 158057850], [158057955, 158058038], [158059960, 158060101], [158064958, 158065111], [158073869, 158074162], [158091583, 158093242]]	[[157999176, 157999298], [158041707, 158041814], [158043481, 158043549], [158057620, 158057850], [158057955, 158058038], [158059960, 158060101], [158064958, 158065111], [158073869, 158074162], [158091583, 158091880]]
ENST00000541722	[[157997276, 157997449], [157999147, 157999298], [158041707, 158041814], [158043481, 158043549], [158057620, 158057850], [158057955, 158058038], [158059960, 158060101], [158064958, 158065111], [158091583, 158093242]]	[[157999176, 157999298], [158041707, 158041814], [158043481, 158043549], [158057620, 158057850], [158057955, 158058038], [158059960, 158060101], [158064958, 158065111], [158091583, 158091591]]
ENST00000512619	[[157997346, 157997449], [157999147, 157999298], [158091583, 158092057]]	[[157999176, 157999298], [158091583, 158091632]]
ENST00000509282	[[157997554, 157997710], [157999147, 157999298], [158041707, 158041814], [158043481, 158043549], [158057620, 158057850], [158057955, 158058038], [158059960, 158060101], [158064958, 158065111], [158073869, 158074162], [158091583, 158091958]]	[[157999176, 157999298], [158041707, 158041814], [158043481, 158043549], [158057620, 158057850], [158057955, 158058038], [158059960, 158060101], [158064958, 158065111], [158073869, 158074162], [158091583, 158091880]]
ENST00000515642	[[157997317, 157997449], [157999147, 157999298], [158005815, 158005876], [158012522, 158012534], [158041707, 158041814], [158043481, 158043549], [158057620, 158057663]]	[[157999176, 157999298], [158005815, 158005834]]
ENST00000506411	[[157997355, 157997449], [157999147, 157999298], [158005815, 158005876], [158041707, 158041814], [158043481, 158043549], [158057620, 158057850], [158057955, 158058038], [158059960, 158060024]]	[[157999176, 157999298], [158005815, 158005834]]
ENST00000510970	[[158057516, 158057850], [158057955, 158058038], [158059960, 158060052]]	None
NM_001166061	[[157997276, 157997449], [157999147, 157999298], [158041707, 158041814], [158043481, 158043549], [158057620, 158057850], [158057955, 158058038], [158059960, 158060101], [158064958, 158065111], [158091583, 158093242]]	[[157999176, 157999298], [158041707, 158041814], [158043481, 158043549], [158057620, 158057850], [158057955, 158058038], [158059960, 158060101], [158064958, 158065111], [158091583, 158091591]]
NM_000824	[[157997276, 157997449], [157999147, 157999298], [158041707, 158041814], [158043481, 158043549], [158057620, 158057850], [158057955, 158058038], [158059960, 158060101], [158064958, 158065111], [158073869, 158074162], [158091583, 158093242]]	[[157999176, 157999298], [158041707, 158041814], [158043481, 158043549], [158057620, 158057850], [158057955, 158058038], [158059960, 158060101], [158064958, 158065111], [158073869, 158074162], [158091583, 158091880]]
NM_001166060	[[157997554, 157997710], [157999147, 157999298], [158041707, 158041814], [158043481, 158043549], [158057620, 158057850], [158057955, 158058038], [158059960, 158060101], [158064958, 158065111], [158073869, 158074162], [158091583, 158093242]]	[[157999176, 157999298], [158041707, 158041814], [158043481, 158043549], [158057620, 158057850], [158057955, 158058038], [158059960, 158060101], [158064958, 158065111], [158073869, 158074162], [158091583, 158091880]]

Promoter

Chrom	Start	End	Description
chr4	157997240	157997259	CAGE_peak_2_at_GLRB_5end
chr4	157997273	157997391	CAGE_peak_1_at_GLRB_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I156168	156168689	156170131	0.74	[{'connected_gene': 'TDO2', 'score': 6.25}, {'connected_gene': 'GLRB', 'score': 4.17}, {'connected_gene': 'LOC102724785', 'score': 0.31}, {'connected_gene': 'LOC105377508', 'score': 0.1}]
chr4	GH04I157265	157265515	157265765	0.36	[{'connected_gene': 'GRIA2', 'score': 10.5}, {'connected_gene': 'RNU6-582P', 'score': 10.5}, {'connected_gene': 'LOC391707', 'score': 10.5}, {'connected_gene': 'GLRB', 'score': 3.22}, {'connected_gene': 'PDGFC', 'score': 1.43}, {'connected_gene': 'LINC02433', 'score': 0.06}]
chr4	GH04I157115	157115248	157116907	0.86	[{'connected_gene': 'GLRB', 'score': 0.26}, {'connected_gene': 'RNU6-582P', 'score': 0.17}]
chr4	GH04I157100	157100486	157101256	0.2	[{'connected_gene': 'GLRB', 'score': 0.34}, {'connected_gene': 'RNU6-582P', 'score': 0.15}]
chr4	GH04I157101	157101304	157101877	0.2	[{'connected_gene': 'GLRB', 'score': 0.31}, {'connected_gene': 'RNU6-582P', 'score': 0.15}]
chr4	GH04I157095	157095573	157096494	0.2	[{'connected_gene': 'GLRB', 'score': 4.59}, {'connected_gene': 'RNU6-582P', 'score': 0.14}]
chr4	GH04I157106	157106128	157114603	0.52	[{'connected_gene': 'GLRB', 'score': 0.29}, {'connected_gene': 'RNU6-582P', 'score': 0.16}]
chr4	GH04I157075	157075800	157077000	1.46	[{'connected_gene': 'GLRB', 'score': 555.74}, {'connected_gene': 'RNU6-582P', 'score': 0.13}]
chr4	GH04I157120	157120389	157125789	0.2	[{'connected_gene': 'GLRB', 'score': 0.25}, {'connected_gene': 'RNU6-582P', 'score': 0.18}]
chr4	GH04I157127	157127242	157128593	0.38	[{'connected_gene': 'GLRB', 'score': 0.23}, {'connected_gene': 'RNU6-582P', 'score': 0.19}]
chr4	GH04I157014	157014801	157016018	0.92	[{'connected_gene': 'GLRB', 'score': 4.55}, {'connected_gene': 'RPPH1-3P', 'score': 0.31}, {'connected_gene': 'GC04P157065', 'score': 0.25}]
chr4	GH04I157043	157043001	157043400	0.38	[{'connected_gene': 'GLRB', 'score': 5.75}, {'connected_gene': 'GC04P157065', 'score': 0.34}, {'connected_gene': 'RPPH1-3P', 'score': 0.22}]
chr4	GH04I157125	157125869	157127026	0.2	[{'connected_gene': 'ENSG00000250622', 'score': 11.06}, {'connected_gene': 'PDGFC', 'score': 11.05}, {'connected_gene': 'GLRB', 'score': 5.17}, {'connected_gene': 'RNU6-582P', 'score': 0.18}]
chr4	GH04I156998	156998577	157000475	1.12	[{'connected_gene': 'ENSG00000250622', 'score': 11.91}, {'connected_gene': 'PDGFC', 'score': 11.91}, {'connected_gene': 'GLRB', 'score': 4.52}, {'connected_gene': 'RPPH1-3P', 'score': 0.39}, {'connected_gene': 'GC04P157065', 'score': 0.2}]
chr4	GH04I157003	157003215	157005562	1.05	[{'connected_gene': 'ENSG00000250622', 'score': 11.89}, {'connected_gene': 'PDGFC', 'score': 11.89}, {'connected_gene': 'GLRB', 'score': 4.53}, {'connected_gene': 'RPPH1-3P', 'score': 0.37}, {'connected_gene': 'GC04P157065', 'score': 0.21}]
chr4	GH04I156974	156974015	156974950	0.4	[{'connected_gene': 'ENSG00000250622', 'score': 550.77}, {'connected_gene': 'GLRB', 'score': 4.4}, {'connected_gene': 'RPPH1-3P', 'score': 0.39}]