PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000155674	[[17618400, 17619247], [17619439, 17619628], [17621948, 17622123], [17623987, 17624021], [17625913, 17626007], [17629337, 17629450], [17630431, 17630635], [17646098, 17646177]]	[[17618910, 17619247], [17619439, 17619628], [17621948, 17622123], [17623987, 17624021], [17625913, 17626007], [17629337, 17629450], [17630431, 17630635], [17646098, 17646134]]
ENST00000336737	[[17618409, 17619247], [17619439, 17619628], [17621948, 17622123], [17623987, 17624021], [17625913, 17626007], [17629337, 17629450], [17630431, 17630635], [17640015, 17640167]]	[[17618910, 17619247], [17619439, 17619628], [17621948, 17622123], [17623987, 17624021], [17625913, 17626007], [17629337, 17629450], [17630431, 17630635], [17640015, 17640141]]
ENST00000477157	[[17618411, 17619247], [17619439, 17619628], [17621948, 17624537]]	None
ENST00000399852	[[17618468, 17619247], [17621948, 17622123], [17623987, 17624021], [17640015, 17640145]]	[[17618910, 17619247], [17621948, 17622123], [17623987, 17624021], [17640015, 17640141]]
ENST00000486462	[[17618471, 17619247], [17619439, 17619628], [17621948, 17622123], [17622282, 17622733]]	None
ENST00000463033	[[17629337, 17629450], [17639346, 17639876]]	None
ENST00000480451	[[17629338, 17629450], [17630431, 17630635], [17639346, 17640058]]	None

Promoter

Chrom	Start	End	Description
chr22	17639562	17639574	CAGE_peak_5_at_CECR5_5end
chr22	17639865	17639922	CAGE_peak_3_at_CECR5_5end
chr22	17640051	17640104	CAGE_peak_2_at_CECR5_5end
chr22	17640110	17640185	CAGE_peak_1_at_CECR5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr22	GH22I017769	17769130	17779154	2.47	[{'connected_gene': 'BID', 'score': 564.93}, {'connected_gene': 'MICAL3', 'score': 11.01}, {'connected_gene': 'HDHD5', 'score': 4.54}, {'connected_gene': 'BCL2L13', 'score': 2.36}, {'connected_gene': 'CECR2', 'score': 1.94}, {'connected_gene': 'LINC00528', 'score': 0.77}, {'connected_gene': 'PIR62667', 'score': 0.44}]
chr22	GH22I017233	17233077	17236254	0.85	[{'connected_gene': 'CECR3', 'score': 13.03}, {'connected_gene': 'CECR2', 'score': 10.26}, {'connected_gene': 'ADA2', 'score': 4.12}, {'connected_gene': 'GAB4', 'score': 3.26}, {'connected_gene': 'HDHD5', 'score': 1.76}]
chr22	GH22I017148	17148787	17151700	0.49	[{'connected_gene': 'HDHD5', 'score': 10.62}, {'connected_gene': 'IL17RA', 'score': 7.97}, {'connected_gene': 'TMEM121B', 'score': 6.84}, {'connected_gene': 'HDHD5-AS1', 'score': 0.44}, {'connected_gene': 'GC22P017137', 'score': 0.37}]
chr22	GH22I017157	17157793	17160406	1.99	[{'connected_gene': 'HDHD5', 'score': 559.96}, {'connected_gene': 'HDHD5-AS1', 'score': 550.77}, {'connected_gene': 'LINC01664', 'score': 12.06}, {'connected_gene': 'TMEM121B', 'score': 12.06}, {'connected_gene': 'GC22P017137', 'score': 0.34}]
chr22	GH22I017164	17164811	17164920	0.38	[{'connected_gene': 'HDHD5', 'score': 550.77}, {'connected_gene': 'HDHD5-AS1', 'score': 0.44}]
chr22	GH22I017170	17170783	17173064	1.48	[{'connected_gene': 'IL17RA', 'score': 7.54}, {'connected_gene': 'HDHD5', 'score': 5.33}, {'connected_gene': 'RPL32P5', 'score': 0.34}]
chr22	GH22I017191	17191130	17191600	0.52	[{'connected_gene': 'RPL32P5', 'score': 550.77}, {'connected_gene': 'GC22P017193', 'score': 550.77}, {'connected_gene': 'ADA2', 'score': 11.83}, {'connected_gene': 'CECR3', 'score': 11.72}, {'connected_gene': 'CECR2', 'score': 11.42}, {'connected_gene': 'LINC01664', 'score': 11.21}, {'connected_gene': 'TMEM121B', 'score': 11.21}, {'connected_gene': 'HDHD5', 'score': 0.31}]
chr22	GH22I017152	17152846	17153452	0.2	[{'connected_gene': 'LINC01664', 'score': 12.08}, {'connected_gene': 'TMEM121B', 'score': 12.08}, {'connected_gene': 'IL17RA', 'score': 7.49}, {'connected_gene': 'HDHD5', 'score': 5.87}, {'connected_gene': 'HDHD5-AS1', 'score': 0.44}, {'connected_gene': 'GC22P017137', 'score': 0.37}]
chr22	GH22I017131	17131909	17132623	0.54	[{'connected_gene': 'GC22P017136', 'score': 550.77}, {'connected_gene': 'HDHD5-AS1', 'score': 12.68}, {'connected_gene': 'HDHD5', 'score': 12.67}, {'connected_gene': 'CECR2', 'score': 10.65}, {'connected_gene': 'ADA2', 'score': 9.92}, {'connected_gene': 'CECR3', 'score': 9.87}, {'connected_gene': 'LINC01664', 'score': 7.6}]