PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000259727	[[16238810, 16239011], [16247072, 16247192], [16250514, 16250598], [16254792, 16254966], [16274645, 16274727], [16279014, 16279121], [16286023, 16286066], [16290692, 16290852], [16295236, 16295780]]	[[16238924, 16239011], [16247072, 16247192], [16250514, 16250598], [16254792, 16254966], [16274645, 16274727], [16279014, 16279121], [16286023, 16286066], [16290692, 16290852], [16295236, 16295417]]
ENST00000543191	[[16258203, 16258352], [16286023, 16286066], [16290692, 16290852], [16295236, 16295559]]	None
ENST00000544145	[[16289748, 16289799], [16290692, 16290852], [16295236, 16295775]]	None
ENST00000540478	[[16290175, 16290852], [16295236, 16295352]]	None
NM_006877	[[16238810, 16239011], [16247072, 16247192], [16250514, 16250598], [16254792, 16254966], [16274645, 16274727], [16279014, 16279121], [16286023, 16286066], [16290692, 16290852], [16295236, 16295780]]	[[16238924, 16239011], [16247072, 16247192], [16250514, 16250598], [16254792, 16254966], [16274645, 16274727], [16279014, 16279121], [16286023, 16286066], [16290692, 16290852], [16295236, 16295417]]

Promoter

Chrom	Start	End	Description
chr6	16238704	16238715	CAGE_peak_4_at_GMPR_5end
chr6	16238786	16238854	CAGE_peak_1_at_GMPR_5end
chr6	16238868	16238879	CAGE_peak_3_at_GMPR_5end
chr6	16238880	16238915	CAGE_peak_2_at_GMPR_5end
chr6	16289265	16289270	CAGE_peak_5_at_GMPR_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I016782	16782844	16784311	0.6	[{'connected_gene': 'ATXN1', 'score': 10.85}, {'connected_gene': 'ENSG00000229931', 'score': 10.85}, {'connected_gene': 'GMPR', 'score': 4.92}, {'connected_gene': 'ENSG00000272341', 'score': 0.37}, {'connected_gene': 'GC06P016871', 'score': 0.17}]
chr6	GH06I016267	16267553	16268393	1.17	[{'connected_gene': 'MYLIP', 'score': 11.02}, {'connected_gene': 'GMPR', 'score': 9.29}, {'connected_gene': 'ENSG00000282024', 'score': 0.77}, {'connected_gene': 'GC06M016363', 'score': 0.15}]
chr6	GH06I015689	15689900	15691999	1.24	[{'connected_gene': 'MYLIP', 'score': 12.15}, {'connected_gene': 'RNU6-1114P', 'score': 11.72}, {'connected_gene': 'GMPR', 'score': 10.27}, {'connected_gene': 'DTNBP1', 'score': 6.34}, {'connected_gene': 'PIR51786', 'score': 0.2}, {'connected_gene': 'LOC102724520', 'score': 0.2}]
chr6	GH06I016214	16214210	16216820	1.67	[{'connected_gene': 'GMPR', 'score': 11.89}, {'connected_gene': 'MYLIP', 'score': 2.44}, {'connected_gene': 'PIR38615', 'score': 0.39}, {'connected_gene': 'RNU6-1114P', 'score': 0.39}]
chr6	GH06I016198	16198169	16198935	0.43	[{'connected_gene': 'GMPR', 'score': 5.7}, {'connected_gene': 'RNU6-1114P', 'score': 0.44}, {'connected_gene': 'MRPL42P2', 'score': 0.31}]
chr6	GH06I016189	16189133	16191409	0.51	[{'connected_gene': 'GMPR', 'score': 5.16}, {'connected_gene': 'RNU6-1114P', 'score': 0.39}, {'connected_gene': 'MRPL42P2', 'score': 0.37}]
chr6	GH06I016191	16191611	16192661	0.49	[{'connected_gene': 'GMPR', 'score': 5.16}, {'connected_gene': 'RNU6-1114P', 'score': 0.39}, {'connected_gene': 'MRPL42P2', 'score': 0.34}]
chr6	GH06I016222	16222739	16223207	0.31	[{'connected_gene': 'GMPR', 'score': 8.83}, {'connected_gene': 'PIR38615', 'score': 0.44}, {'connected_gene': 'RNU6-1114P', 'score': 0.37}]
chr6	GH06I016225	16223423	16223623	0.43	[{'connected_gene': 'GMPR', 'score': 8.87}, {'connected_gene': 'PIR38615', 'score': 0.44}, {'connected_gene': 'RNU6-1114P', 'score': 0.37}]
chr6	GH06I016281	16281687	16282533	0.54	[{'connected_gene': 'GMPR', 'score': 6.25}, {'connected_gene': 'ENSG00000282024', 'score': 0.37}, {'connected_gene': 'GC06M016363', 'score': 0.18}]
chr6	GH06I016276	16276350	16279016	1.36	[{'connected_gene': 'GMPR', 'score': 7.39}, {'connected_gene': 'ENSG00000282024', 'score': 0.39}, {'connected_gene': 'GC06M016363', 'score': 0.17}]
chr6	GH06I016236	16236245	16240582	2.45	[{'connected_gene': 'GMPR', 'score': 550.77}, {'connected_gene': 'ENSG00000207193', 'score': 0.44}, {'connected_gene': 'GC06M016233', 'score': 0.44}]
chr6	GH06I016269	16269100	16271205	0.99	[{'connected_gene': 'GMPR', 'score': 7.95}, {'connected_gene': 'ENSG00000282024', 'score': 0.44}, {'connected_gene': 'GC06M016363', 'score': 0.16}]
chr6	GH06I016257	16257581	16259302	1.04	[{'connected_gene': 'GMPR', 'score': 9.36}, {'connected_gene': 'ENSG00000282024', 'score': 0.44}]
chr6	GH06I016241	16241550	16241699	0.82	[{'connected_gene': 'GMPR', 'score': 0.77}, {'connected_gene': 'ENSG00000282024', 'score': 0.34}]
chr6	GH06I016250	16250130	16250279	0.43	[{'connected_gene': 'GMPR', 'score': 0.39}, {'connected_gene': 'ENSG00000282024', 'score': 0.39}]
chr6	GH06I016240	16240710	16241507	0.9	[{'connected_gene': 'GMPR', 'score': 0.77}, {'connected_gene': 'ENSG00000282024', 'score': 0.34}]
chr6	GH06I016254	16254226	16255009	0.2	[{'connected_gene': 'GMPR', 'score': 6.08}, {'connected_gene': 'ENSG00000282024', 'score': 0.44}]
chr6	GH06I016253	16253257	16253993	0.43	[{'connected_gene': 'GMPR', 'score': 9.35}, {'connected_gene': 'ENSG00000282024', 'score': 0.39}]
chr6	GH06I016242	16242650	16246141	1.39	[{'connected_gene': 'GMPR', 'score': 7.27}, {'connected_gene': 'ENSG00000282024', 'score': 0.34}]
chr6	GH06I016204	16204649	16207299	1.36	[{'connected_gene': 'RNU6-1114P', 'score': 550.77}, {'connected_gene': 'GMPR', 'score': 20.93}, {'connected_gene': 'PIR38615', 'score': 0.34}]
chr6	GH06I016291	16291533	16293321	0.49	[{'connected_gene': 'ENSG00000282024', 'score': 0.31}, {'connected_gene': 'GMPR', 'score': 0.23}, {'connected_gene': 'GC06M016363', 'score': 0.19}]
chr6	GH06I016256	16256592	16256868	0.59	[{'connected_gene': 'ENSG00000282024', 'score': 0.44}, {'connected_gene': 'GMPR', 'score': 0.37}]
chr6	GH06I016272	16272628	16273911	0.52	[{'connected_gene': 'ENSG00000282024', 'score': 0.44}, {'connected_gene': 'GMPR', 'score': 0.29}, {'connected_gene': 'GC06M016363', 'score': 0.16}]
chr6	GH06I016285	16285039	16286481	0.69	[{'connected_gene': 'ENSG00000282024', 'score': 0.34}, {'connected_gene': 'GMPR', 'score': 0.25}, {'connected_gene': 'GC06M016363', 'score': 0.18}]
chr6	GH06I016283	16283224	16285021	0.2	[{'connected_gene': 'ENSG00000282024', 'score': 0.37}, {'connected_gene': 'GMPR', 'score': 0.25}, {'connected_gene': 'GC06M016363', 'score': 0.18}]
chr6	GH06I016258	16256877	16257330	0.38	[{'connected_gene': 'ENSG00000282024', 'score': 0.44}, {'connected_gene': 'GMPR', 'score': 0.37}]
chr6	GH06I016229	16229201	16229600	0.77	[{'connected_gene': 'PIR38615', 'score': 550.77}, {'connected_gene': 'PIR43280', 'score': 550.77}, {'connected_gene': 'RNU6-1114P', 'score': 11.18}, {'connected_gene': 'GMPR', 'score': 9.27}]
chr6	GH06I016156	16156692	16162640	0.81	[{'connected_gene': 'GC06P016164', 'score': 550.77}, {'connected_gene': 'GC06P016163', 'score': 550.77}, {'connected_gene': 'LOC100131159', 'score': 550.77}, {'connected_gene': 'PIR35988', 'score': 550.77}, {'connected_gene': 'MYLIP', 'score': 11.5}, {'connected_gene': 'RNU6-1114P', 'score': 10.97}, {'connected_gene': 'GMPR', 'score': 4.91}, {'connected_gene': 'GC06M016150', 'score': 0.39}]