PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000226413	[[68605045, 68606442], [68610285, 68610505], [68619531, 68620078]]	[[68606197, 68606442], [68610285, 68610505], [68619531, 68620053]]
ENST00000420975	[[68606197, 68606442], [68610285, 68610377], [68619531, 68620053]]	[[68606306, 68606442], [68610285, 68610377], [68619531, 68620053]]
NM_000406	[[68603092, 68606442], [68610285, 68610505], [68619531, 68621804]]	[[68606197, 68606442], [68610285, 68610505], [68619531, 68620053]]
NM_001012763	[[68603092, 68606442], [68610285, 68610377], [68619531, 68621804]]	[[68606306, 68606442], [68610285, 68610377], [68619531, 68620053]]

Promoter

Chrom	Start	End	Description
chr4	68620100	68620112	CAGE_peak_1_at_GNRHR_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I067861	67861197	67862244	0.49	[{'connected_gene': 'TMPRSS11D', 'score': 11.72}, {'connected_gene': 'GNRHR', 'score': 10.46}, {'connected_gene': 'LOC102724780', 'score': 0.19}, {'connected_gene': 'UBA6-AS1', 'score': 0.1}]
chr4	GH04I067712	67712967	67715176	1.23	[{'connected_gene': 'UBA6', 'score': 26.62}, {'connected_gene': 'UBA6-AS1', 'score': 21.93}, {'connected_gene': 'GNRHR', 'score': 10.61}, {'connected_gene': 'STAP1', 'score': 10.19}, {'connected_gene': 'ST3GAL1P1', 'score': 0.77}, {'connected_gene': 'GC04M067708', 'score': 0.44}, {'connected_gene': 'GC04P067653', 'score': 0.21}]
chr4	GH04I067754	67754378	67754437	0.5	[{'connected_gene': 'GNRHR', 'score': 550.77}, {'connected_gene': 'ENSG00000202374', 'score': 0.44}, {'connected_gene': 'UBA6-AS1', 'score': 0.23}]
chr4	GH04I067713	67712203	67712232	0.43	[{'connected_gene': 'GNRHR', 'score': 10.61}, {'connected_gene': 'STAP1', 'score': 10.19}, {'connected_gene': 'GC04M067708', 'score': 0.77}, {'connected_gene': 'ST3GAL1P1', 'score': 0.44}, {'connected_gene': 'UBA6-AS1', 'score': 0.39}, {'connected_gene': 'GC04P067653', 'score': 0.22}]
chr4	GH04I067724	67724083	67724232	0.38	[{'connected_gene': 'LOC100419862', 'score': 550.77}, {'connected_gene': 'UBA6-AS1', 'score': 18.8}, {'connected_gene': 'GNRHR', 'score': 11.15}, {'connected_gene': 'PIR51733', 'score': 0.77}, {'connected_gene': 'GC04P067653', 'score': 0.19}]
chr4	GH04I067725	67724367	67728734	1.17	[{'connected_gene': 'LOC100419046', 'score': 550.77}, {'connected_gene': 'UBA6', 'score': 26.86}, {'connected_gene': 'GNRHR', 'score': 11.73}, {'connected_gene': 'TMPRSS11D', 'score': 9.78}, {'connected_gene': 'GC04P067742', 'score': 0.37}, {'connected_gene': 'UBA6-AS1', 'score': 0.31}, {'connected_gene': 'GC04P067653', 'score': 0.19}]
chr4	GH04I067720	67720410	67722857	1.39	[{'connected_gene': 'PIR51733', 'score': 550.77}, {'connected_gene': 'PIR61967', 'score': 550.77}, {'connected_gene': 'UBA6', 'score': 33.34}, {'connected_gene': 'UBA6-AS1', 'score': 21.88}, {'connected_gene': 'CENPC', 'score': 19.77}, {'connected_gene': 'YTHDC1', 'score': 13.23}, {'connected_gene': 'ENSG00000270257', 'score': 11.94}, {'connected_gene': 'GNRHR', 'score': 11.15}, {'connected_gene': 'LOC100419862', 'score': 0.77}, {'connected_gene': 'GC04P067653', 'score': 0.2}]