PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000419761	[[27961803, 27964344], [27964449, 27964483], [28023384, 28023720], [28024149, 28024303], [28030273, 28030433], [28032156, 28032426], [28034635, 28034778]]	[[27964157, 27964344], [27964449, 27964483], [28023384, 28023720], [28024149, 28024303], [28030273, 28030433], [28032156, 28032344]]
ENST00000375790	[[27961803, 27964344], [27964449, 27964483], [28023384, 28023720], [28024149, 28024303], [28030273, 28030433], [28032156, 28032423], [28034635, 28034989]]	[[27964157, 27964344], [27964449, 27964483], [28023384, 28023720], [28024149, 28024303], [28030273, 28030433], [28032156, 28032344]]
ENST00000460919	[[28007491, 28007525], [28023384, 28023720], [28024149, 28024303], [28030273, 28030433], [28032156, 28032474]]	[[28007491, 28007525], [28023384, 28023720], [28024149, 28024303], [28030273, 28030433], [28032156, 28032344]]
ENST00000561227	[[28032170, 28032426], [28034348, 28034523]]	[[28032170, 28032344]]
NM_173576	[[27961802, 27964344], [27964449, 27964483], [28023384, 28023720], [28024149, 28024303], [28030273, 28030433], [28032156, 28032426], [28034635, 28034778]]	[[27964157, 27964344], [27964449, 27964483], [28023384, 28023720], [28024149, 28024303], [28030273, 28030433], [28032156, 28032344]]
NM_001242702	[[27961802, 27964344], [27964449, 27964483], [28023384, 28023720], [28024149, 28024303], [28030273, 28030433], [28032156, 28032423], [28034635, 28034778]]	[[27964157, 27964344], [27964449, 27964483], [28023384, 28023720], [28024149, 28024303], [28030273, 28030433], [28032156, 28032344]]

Promoter

Chrom	Start	End	Description
chr10	28032421	28032494	CAGE_peak_2_at_MKX_5end
chr10	28032548	28032559	CAGE_peak_7_at_MKX_5end
chr10	28034395	28034404	CAGE_peak_9_at_MKX_5end
chr10	28034739	28034756	CAGE_peak_1_at_MKX_5end
chr10	28034772	28034783	CAGE_peak_4_at_MKX_5end
chr10	28035112	28035130	CAGE_peak_5_at_MKX_5end
chr10	28035133	28035148	CAGE_peak_3_at_MKX_5end
chr10	28035155	28035166	CAGE_peak_8_at_MKX_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I027714	27714007	27714159	0.51	[{'connected_gene': 'MKX', 'score': 11.8}, {'connected_gene': 'ARMC4', 'score': 10.69}, {'connected_gene': 'GC10M027690', 'score': 0.34}, {'connected_gene': 'MKX-AS1', 'score': 0.29}]
chr10	GH10I027820	27820200	27820541	0.69	[{'connected_gene': 'MKX', 'score': 10.69}, {'connected_gene': 'MKX-AS1', 'score': 10.68}, {'connected_gene': 'ARMC4', 'score': 8.0}, {'connected_gene': 'GC10P027838', 'score': 0.37}, {'connected_gene': 'RN7SKP132', 'score': 0.28}]
chr10	GH10I028185	28185259	28186424	0.2	[{'connected_gene': 'MKX', 'score': 10.67}, {'connected_gene': 'MKX-AS1', 'score': 10.67}, {'connected_gene': 'LRRC37A6P', 'score': 5.29}, {'connected_gene': 'MPP7', 'score': 5.09}, {'connected_gene': 'MIR8086', 'score': 0.15}, {'connected_gene': 'MRPS21P5', 'score': 0.09}]
chr10	GH10I028364	28364737	28369905	1.29	[{'connected_gene': 'MPP7', 'score': 24.46}, {'connected_gene': 'MKX-AS1', 'score': 10.23}, {'connected_gene': 'MKX', 'score': 10.23}, {'connected_gene': 'WAC', 'score': 1.4}, {'connected_gene': 'ZNF101P1', 'score': 0.31}, {'connected_gene': 'ENSG00000222666', 'score': 0.26}]
chr10	GH10I028238	28238115	28239102	0.2	[{'connected_gene': 'MPP7', 'score': 17.33}, {'connected_gene': 'MKX-AS1', 'score': 10.95}, {'connected_gene': 'MKX', 'score': 10.95}, {'connected_gene': 'MIR8086', 'score': 0.23}, {'connected_gene': 'MRPS21P5', 'score': 0.07}]
chr10	GH10I028177	28177682	28179582	1.28	[{'connected_gene': 'MKX-AS1', 'score': 10.94}, {'connected_gene': 'MKX', 'score': 10.94}, {'connected_gene': 'LRRC37A6P', 'score': 4.69}, {'connected_gene': 'MIR8086', 'score': 0.14}, {'connected_gene': 'MPP7', 'score': 0.1}, {'connected_gene': 'MRPS21P5', 'score': 0.09}]
chr10	GH10I028179	28179592	28179761	0.76	[{'connected_gene': 'MKX-AS1', 'score': 10.94}, {'connected_gene': 'MKX', 'score': 10.94}, {'connected_gene': 'LRRC37A6P', 'score': 4.57}, {'connected_gene': 'MIR8086', 'score': 0.14}, {'connected_gene': 'MPP7', 'score': 0.1}, {'connected_gene': 'MRPS21P5', 'score': 0.1}]
chr10	GH10I027679	27679326	27680436	0.4	[{'connected_gene': 'MKX-AS1', 'score': 10.6}, {'connected_gene': 'MKX', 'score': 10.6}, {'connected_gene': 'PTCHD3', 'score': 4.42}, {'connected_gene': 'GC10M027690', 'score': 0.39}, {'connected_gene': 'LOC105376463', 'score': 0.14}]
chr10	GH10I028243	28242912	28243061	0.51	[{'connected_gene': 'MKX-AS1', 'score': 10.95}, {'connected_gene': 'MKX', 'score': 10.95}, {'connected_gene': 'MPP7', 'score': 10.38}, {'connected_gene': 'MIR8086', 'score': 0.25}, {'connected_gene': 'MRPS21P5', 'score': 0.07}]
chr10	GH10I028242	28242599	28242847	0.51	[{'connected_gene': 'MKX-AS1', 'score': 10.95}, {'connected_gene': 'MKX', 'score': 10.95}, {'connected_gene': 'MPP7', 'score': 10.38}, {'connected_gene': 'MIR8086', 'score': 0.25}, {'connected_gene': 'MRPS21P5', 'score': 0.07}]
chr10	GH10I028241	28241812	28242061	0.85	[{'connected_gene': 'MKX-AS1', 'score': 10.95}, {'connected_gene': 'MKX', 'score': 10.95}, {'connected_gene': 'MPP7', 'score': 10.38}, {'connected_gene': 'MIR8086', 'score': 0.25}, {'connected_gene': 'MRPS21P5', 'score': 0.07}]
chr10	GH10I028236	28236626	28237386	0.38	[{'connected_gene': 'MKX-AS1', 'score': 10.47}, {'connected_gene': 'MKX', 'score': 10.47}, {'connected_gene': 'MPP7', 'score': 5.13}, {'connected_gene': 'MIR8086', 'score': 0.23}, {'connected_gene': 'MRPS21P5', 'score': 0.07}]
chr10	GH10I028186	28186437	28187360	0.2	[{'connected_gene': 'MKX-AS1', 'score': 10.67}, {'connected_gene': 'MKX', 'score': 10.67}, {'connected_gene': 'MPP7', 'score': 5.18}, {'connected_gene': 'MIR8086', 'score': 0.15}, {'connected_gene': 'MRPS21P5', 'score': 0.09}]
chr10	GH10I027724	27724228	27724863	0.38	[{'connected_gene': 'MKX-AS1', 'score': 0.34}, {'connected_gene': 'MKX', 'score': 0.34}, {'connected_gene': 'GC10M027690', 'score': 0.29}]
chr10	GH10I027745	27745809	27745981	1.15	[{'connected_gene': 'MKX-AS1', 'score': 550.77}, {'connected_gene': 'MKX', 'score': 550.77}]
chr10	GH10I027742	27741152	27741301	0.43	[{'connected_gene': 'MKX-AS1', 'score': 0.77}, {'connected_gene': 'MKX', 'score': 0.77}, {'connected_gene': 'GC10M027690', 'score': 0.23}]
chr10	GH10I027725	27725192	27725341	0.2	[{'connected_gene': 'MKX-AS1', 'score': 0.37}, {'connected_gene': 'MKX', 'score': 0.34}, {'connected_gene': 'GC10M027690', 'score': 0.29}]
chr10	GH10I027741	27741732	27745681	1.32	[{'connected_gene': 'MKX-AS1', 'score': 550.77}, {'connected_gene': 'MKX', 'score': 0.77}, {'connected_gene': 'GC10M027690', 'score': 0.23}]
chr10	GH10I027723	27723469	27724071	0.31	[{'connected_gene': 'MKX-AS1', 'score': 0.34}, {'connected_gene': 'MKX', 'score': 0.34}, {'connected_gene': 'GC10M027690', 'score': 0.29}]
chr10	GH10I027746	27746292	27746441	0.31	[{'connected_gene': 'MKX-AS1', 'score': 550.77}, {'connected_gene': 'MKX', 'score': 550.77}, {'connected_gene': 'GC10P027778', 'score': 0.29}]
chr10	GH10I027701	27701941	27702400	0.31	[{'connected_gene': 'GC10M027690', 'score': 0.39}, {'connected_gene': 'MKX-AS1', 'score': 0.26}, {'connected_gene': 'MKX', 'score': 0.26}]