PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000332427	[[12813994, 12815404], [12837284, 12837441], [12848392, 12848445], [12848998, 12849121]]	[[12814134, 12815382]]
ENST00000540796	[[12815204, 12815404], [12837284, 12837441], [12848392, 12848445], [12848998, 12849141]]	[[12815204, 12815382]]
ENST00000545876	[[12837028, 12837441], [12848392, 12848445], [12848998, 12849117]]	None
ENST00000537507	[[12837331, 12837441], [12841446, 12841866], [12848392, 12848445], [12848998, 12849121]]	None
ENST00000540510	[[12813824, 12815404], [12837284, 12837455]]	[[12814134, 12815382]]
NM_006143	[[12813994, 12815404], [12837284, 12837441], [12848392, 12848445], [12848998, 12849121]]	[[12814134, 12815382]]

Promoter

Chrom	Start	End	Description
chr12	12837400	12837418	CAGE_peak_3_at_GPR19_5end
chr12	12837423	12837501	CAGE_peak_1_at_GPR19_5end
chr12	12849030	12849042	CAGE_peak_5_at_GPR19_5end
chr12	12849073	12849138	CAGE_peak_2_at_GPR19_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I012711	12711881	12713185	0.31	[{'connected_gene': 'APOLD1', 'score': 12.65}, {'connected_gene': 'GPR19', 'score': 0.77}, {'connected_gene': 'CDKN1B', 'score': 0.77}, {'connected_gene': 'GC12P012702', 'score': 0.44}]
chr12	GH12I012713	12713282	12727320	2.63	[{'connected_gene': 'APOLD1', 'score': 566.86}, {'connected_gene': 'CDKN1B', 'score': 556.44}, {'connected_gene': 'ENSG00000275560', 'score': 550.77}, {'connected_gene': 'DDX47', 'score': 35.03}, {'connected_gene': 'GPR19', 'score': 10.86}, {'connected_gene': 'RPL13AP20', 'score': 9.96}, {'connected_gene': 'MANSC1', 'score': 3.06}, {'connected_gene': 'BORCS5', 'score': 2.68}, {'connected_gene': 'DUSP16', 'score': 1.44}, {'connected_gene': 'LOC105369663', 'score': 0.77}, {'connected_gene': 'GC12P012719', 'score': 0.77}, {'connected_gene': 'PIR57575', 'score': 0.77}, {'connected_gene': 'GC12M012725', 'score': 0.44}]
chr12	GH12I012705	12705687	12706596	0.43	[{'connected_gene': 'APOLD1', 'score': 12.5}, {'connected_gene': 'GC12P012702', 'score': 0.77}, {'connected_gene': 'CDKN1B', 'score': 0.44}, {'connected_gene': 'GPR19', 'score': 0.39}]
chr12	GH12I012557	12557614	12564615	2.67	[{'connected_gene': 'DUSP16', 'score': 553.76}, {'connected_gene': 'CREBL2', 'score': 11.43}, {'connected_gene': 'GPR19', 'score': 10.5}, {'connected_gene': 'CDKN1B', 'score': 9.72}, {'connected_gene': 'ENSG00000255670', 'score': 4.89}, {'connected_gene': 'BCL2L14', 'score': 1.59}, {'connected_gene': 'GC12M012561', 'score': 0.25}, {'connected_gene': 'PIR41199', 'score': 0.19}]
chr12	GH12I012383	12383762	12385861	1.26	[{'connected_gene': 'MANSC1', 'score': 11.81}, {'connected_gene': 'DUSP16', 'score': 11.56}, {'connected_gene': 'ENSG00000240424', 'score': 11.55}, {'connected_gene': 'GPR19', 'score': 11.15}, {'connected_gene': 'CDKN1B', 'score': 10.98}, {'connected_gene': 'BORCS5', 'score': 5.0}, {'connected_gene': 'GC12M012376', 'score': 0.77}, {'connected_gene': 'GC12M012364', 'score': 0.39}, {'connected_gene': 'GC12P012364', 'score': 0.37}]
chr12	GH12I012376	12376601	12377001	1.16	[{'connected_gene': 'MANSC1', 'score': 11.42}, {'connected_gene': 'DUSP16', 'score': 11.39}, {'connected_gene': 'ENSG00000240424', 'score': 11.39}, {'connected_gene': 'CDKN1B', 'score': 11.12}, {'connected_gene': 'GPR19', 'score': 11.06}, {'connected_gene': 'APOLD1', 'score': 10.56}, {'connected_gene': 'LOC105369663', 'score': 10.56}, {'connected_gene': 'GC12M012376', 'score': 0.77}, {'connected_gene': 'GC12P012364', 'score': 0.39}, {'connected_gene': 'GC12M012364', 'score': 0.37}, {'connected_gene': 'BORCS5', 'score': 0.37}]
chr12	GH12I012372	12372933	12373982	0.54	[{'connected_gene': 'MANSC1', 'score': 11.36}, {'connected_gene': 'GPR19', 'score': 11.06}, {'connected_gene': 'DUSP16', 'score': 10.81}, {'connected_gene': 'ENSG00000240424', 'score': 10.8}, {'connected_gene': 'CDKN1B', 'score': 10.73}, {'connected_gene': 'APOLD1', 'score': 10.57}, {'connected_gene': 'LOC105369663', 'score': 10.57}, {'connected_gene': 'GC12M012376', 'score': 0.44}, {'connected_gene': 'GC12P012364', 'score': 0.44}, {'connected_gene': 'BORCS5', 'score': 0.37}, {'connected_gene': 'GC12M012364', 'score': 0.34}]
chr12	GH12I012396	12396903	12400841	1.4	[{'connected_gene': 'DDX47', 'score': 23.95}, {'connected_gene': 'HTR7P1', 'score': 11.23}, {'connected_gene': 'LRP6', 'score': 11.21}, {'connected_gene': 'CREBL2', 'score': 11.13}, {'connected_gene': 'GPR19', 'score': 11.03}, {'connected_gene': 'ENSG00000240424', 'score': 10.8}, {'connected_gene': 'DUSP16', 'score': 10.8}, {'connected_gene': 'LOC100506248', 'score': 10.44}, {'connected_gene': 'MANSC1', 'score': 10.42}, {'connected_gene': 'CDKN1B', 'score': 10.17}, {'connected_gene': 'BORCS5', 'score': 7.83}, {'connected_gene': 'GPRC5D-AS1', 'score': 4.3}, {'connected_gene': 'GC12M012364', 'score': 0.77}, {'connected_gene': 'GC12P012409', 'score': 0.39}]
chr12	GH12I012580	12580930	12588518	1.37	[{'connected_gene': 'DDX47', 'score': 89.98}, {'connected_gene': 'DUSP16', 'score': 12.79}, {'connected_gene': 'LRP6', 'score': 11.16}, {'connected_gene': 'GPR19', 'score': 10.39}, {'connected_gene': 'CDKN1B', 'score': 10.34}, {'connected_gene': 'RPL19P17', 'score': 0.37}, {'connected_gene': 'GC12M012561', 'score': 0.34}]
chr12	GH12I012598	12598845	12601679	0.94	[{'connected_gene': 'DDX47', 'score': 18.22}, {'connected_gene': 'ENSG00000240424', 'score': 11.73}, {'connected_gene': 'DUSP16', 'score': 11.71}, {'connected_gene': 'GPR19', 'score': 10.75}, {'connected_gene': 'CDKN1B', 'score': 10.24}, {'connected_gene': 'CREBL2', 'score': 5.84}, {'connected_gene': 'GC12M012561', 'score': 0.44}, {'connected_gene': 'RPL19P17', 'score': 0.29}]
chr12	GH12I012695	12695415	12698579	1.96	[{'connected_gene': 'GPR19', 'score': 560.36}, {'connected_gene': 'APOLD1', 'score': 17.82}, {'connected_gene': 'LOC105369663', 'score': 11.61}, {'connected_gene': 'ENSG00000240424', 'score': 10.38}, {'connected_gene': 'DUSP16', 'score': 10.37}, {'connected_gene': 'GC12P012687', 'score': 0.44}, {'connected_gene': 'GC12P012702', 'score': 0.44}]
chr12	GH12I012665	12665128	12665547	0.31	[{'connected_gene': 'GPR19', 'score': 11.7}, {'connected_gene': 'CREBL2', 'score': 11.6}, {'connected_gene': 'CDKN1B', 'score': 10.58}, {'connected_gene': 'ENSG00000257004', 'score': 0.77}, {'connected_gene': 'GC12P012657', 'score': 0.44}]
chr12	GH12I012439	12439026	12444930	1.61	[{'connected_gene': 'BORCS5', 'score': 19.32}, {'connected_gene': 'DUSP16', 'score': 18.19}, {'connected_gene': 'DDX47', 'score': 11.97}, {'connected_gene': 'ENSG00000240424', 'score': 10.74}, {'connected_gene': 'CDKN1B', 'score': 10.73}, {'connected_gene': 'CREBL2', 'score': 10.73}, {'connected_gene': 'APOLD1', 'score': 3.12}, {'connected_gene': 'BCL2L14', 'score': 1.92}, {'connected_gene': 'GPR19', 'score': 1.66}, {'connected_gene': 'GC12P012450', 'score': 0.44}, {'connected_gene': 'GC12P012411', 'score': 0.29}]
chr12	GH12I012733	12733121	12738010	1.49	[{'connected_gene': 'CDKN1B', 'score': 21.05}, {'connected_gene': 'APOLD1', 'score': 17.01}, {'connected_gene': 'DDX47', 'score': 10.18}, {'connected_gene': 'BORCS5', 'score': 8.63}, {'connected_gene': 'DUSP16', 'score': 2.11}, {'connected_gene': 'GPR19', 'score': 1.75}, {'connected_gene': 'GC12M012732', 'score': 0.77}, {'connected_gene': 'GC12M012733', 'score': 0.44}]
chr12	GH12I012392	12392454	12393161	1.08	[{'connected_gene': 'CDKN1B', 'score': 13.91}, {'connected_gene': 'GPR19', 'score': 11.03}, {'connected_gene': 'CREBL2', 'score': 10.66}, {'connected_gene': 'BORCS5', 'score': 3.5}, {'connected_gene': 'DUSP16', 'score': 1.9}, {'connected_gene': 'APOLD1', 'score': 1.34}, {'connected_gene': 'GC12M012364', 'score': 0.77}, {'connected_gene': 'GC12M012376', 'score': 0.39}]
chr12	GH12I012402	12402114	12407437	1.66	[{'connected_gene': 'CDKN1B', 'score': 14.04}, {'connected_gene': 'CREBL2', 'score': 11.13}, {'connected_gene': 'DUSP16', 'score': 11.03}, {'connected_gene': 'ENSG00000240424', 'score': 11.02}, {'connected_gene': 'GPR19', 'score': 10.92}, {'connected_gene': 'BORCS5', 'score': 5.56}, {'connected_gene': 'GPRC5D-AS1', 'score': 4.81}, {'connected_gene': 'GC12M012364', 'score': 0.44}, {'connected_gene': 'GC12P012409', 'score': 0.44}]
chr12	GH12I012701	12701107	12701906	0.38	[{'connected_gene': 'GC12P012702', 'score': 550.77}, {'connected_gene': 'APOLD1', 'score': 23.18}, {'connected_gene': 'LOC105369663', 'score': 12.27}, {'connected_gene': 'GC12P012687', 'score': 0.39}, {'connected_gene': 'GPR19', 'score': 0.37}]
chr12	GH12I012628	12628564	12628849	0.46	[{'connected_gene': 'ENSG00000240424', 'score': 11.29}, {'connected_gene': 'DUSP16', 'score': 11.27}, {'connected_gene': 'GPR19', 'score': 11.13}, {'connected_gene': 'GC12P012621', 'score': 0.44}, {'connected_gene': 'CREBL2', 'score': 0.37}, {'connected_gene': 'ENSG00000275963', 'score': 0.34}]
chr12	GH12I012604	12604212	12609214	1.26	[{'connected_gene': 'GC12M012561', 'score': 550.77}, {'connected_gene': 'ENSG00000240424', 'score': 11.59}, {'connected_gene': 'DUSP16', 'score': 11.58}, {'connected_gene': 'GPR19', 'score': 10.84}, {'connected_gene': 'CDKN1B', 'score': 10.01}, {'connected_gene': 'CREBL2', 'score': 6.38}, {'connected_gene': 'RPL19P17', 'score': 0.28}]
chr12	GH12I012591	12591963	12593275	0.6	[{'connected_gene': 'ENSG00000240424', 'score': 12.21}, {'connected_gene': 'DUSP16', 'score': 12.18}, {'connected_gene': 'GPR19', 'score': 10.12}, {'connected_gene': 'GC12M012561', 'score': 0.39}, {'connected_gene': 'RPL19P17', 'score': 0.34}]
chr12	GH12I012448	12448823	12451779	1.67	[{'connected_gene': 'GC12P012450', 'score': 550.77}, {'connected_gene': 'DUSP16', 'score': 16.68}, {'connected_gene': 'CREBL2', 'score': 10.76}, {'connected_gene': 'ENSG00000240424', 'score': 10.44}, {'connected_gene': 'GPR19', 'score': 9.81}, {'connected_gene': 'BORCS5', 'score': 9.39}, {'connected_gene': 'BCL2L14', 'score': 1.85}, {'connected_gene': 'ENSG00000271370', 'score': 0.77}]
chr12	GH12I012731	12731103	12732251	0.6	[{'connected_gene': 'GC12M012732', 'score': 550.77}, {'connected_gene': 'DDX47', 'score': 10.17}, {'connected_gene': 'APOLD1', 'score': 7.56}, {'connected_gene': 'GPR19', 'score': 6.67}, {'connected_gene': 'GC12M012725', 'score': 0.77}]
chr12	GH12I012706	12704047	12704196	0.85	[{'connected_gene': 'GC12P012702', 'score': 550.77}, {'connected_gene': 'DDX47', 'score': 11.82}, {'connected_gene': 'LOC100506248', 'score': 11.08}, {'connected_gene': 'GPR19', 'score': 0.39}, {'connected_gene': 'CDKN1B', 'score': 0.39}]
chr12	GH12I012546	12546507	12546656	1.12	[{'connected_gene': 'ENSG00000240424', 'score': 12.05}, {'connected_gene': 'GPR19', 'score': 10.57}, {'connected_gene': 'CREBL2', 'score': 10.37}, {'connected_gene': 'MANSC1', 'score': 10.33}, {'connected_gene': 'DUSP16', 'score': 0.37}, {'connected_gene': 'PIR41199', 'score': 0.22}]
chr12	GH12I012655	12655601	12656400	1.05	[{'connected_gene': 'GC12P012657', 'score': 550.77}, {'connected_gene': 'GPR19', 'score': 11.66}, {'connected_gene': 'CREBL2', 'score': 11.61}, {'connected_gene': 'CDKN1B', 'score': 11.38}, {'connected_gene': 'ENSG00000240424', 'score': 10.68}, {'connected_gene': 'DUSP16', 'score': 10.67}, {'connected_gene': 'MANSC1', 'score': 10.25}, {'connected_gene': 'ENSG00000275963', 'score': 0.44}]
chr12	GH12I012395	12395235	12396506	0.31	[{'connected_gene': 'GC12M012364', 'score': 550.77}, {'connected_gene': 'GPR19', 'score': 11.03}, {'connected_gene': 'CREBL2', 'score': 10.66}, {'connected_gene': 'CDKN1B', 'score': 10.17}, {'connected_gene': 'GC12M012376', 'score': 0.39}, {'connected_gene': 'BORCS5', 'score': 0.28}]
chr12	GH12I012683	12683987	12686148	1.7	[{'connected_gene': 'GC12P012687', 'score': 550.77}, {'connected_gene': 'GPR19', 'score': 550.29}, {'connected_gene': 'CDKN1B', 'score': 11.38}, {'connected_gene': 'ENSG00000240424', 'score': 11.29}, {'connected_gene': 'DUSP16', 'score': 11.29}, {'connected_gene': 'MANSC1', 'score': 10.12}, {'connected_gene': 'APOLD1', 'score': 5.52}, {'connected_gene': 'FAM234B', 'score': 4.28}, {'connected_gene': 'GSG1', 'score': 3.04}, {'connected_gene': 'ENSG00000257004', 'score': 0.37}]
chr12	GH12I012703	12703492	12703925	0.43	[{'connected_gene': 'GC12P012702', 'score': 550.77}, {'connected_gene': 'GPR19', 'score': 8.86}, {'connected_gene': 'CDKN1B', 'score': 0.39}]
chr12	GH12I012704	12704600	12705001	1.34	[{'connected_gene': 'GC12P012702', 'score': 550.77}, {'connected_gene': 'GPR19', 'score': 0.39}, {'connected_gene': 'CDKN1B', 'score': 0.39}]
chr12	GH12I012676	12676727	12676876	0.31	[{'connected_gene': 'ENSG00000257004', 'score': 0.44}, {'connected_gene': 'GC12P012687', 'score': 0.39}, {'connected_gene': 'GPR19', 'score': 0.26}]
chr12	GH12I012547	12547465	12548220	0.52	[{'connected_gene': 'ENSG00000240424', 'score': 12.05}, {'connected_gene': 'CREBL2', 'score': 10.63}, {'connected_gene': 'GPR19', 'score': 10.57}, {'connected_gene': 'MANSC1', 'score': 10.33}, {'connected_gene': 'DUSP16', 'score': 0.39}, {'connected_gene': 'PIR41199', 'score': 0.22}]