PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000401670	[[1121843, 1121910], [1131042, 1132517]]	[[1131364, 1132492]]
ENST00000413368	[[1126442, 1126880], [1127833, 1127957], [1131042, 1131585]]	[[1131364, 1131585]]
ENST00000397092	[[1126442, 1126880], [1127833, 1127957], [1131042, 1133451]]	[[1131364, 1132492]]
ENST00000297469	[[1126511, 1126880], [1131042, 1133451]]	[[1131364, 1132492]]
ENST00000397088	[[1127722, 1127957], [1131042, 1133446]]	[[1131364, 1132492]]
NM_001505	[[1126442, 1126880], [1131042, 1133451]]	[[1131364, 1132492]]
NM_001039966	[[1126442, 1126880], [1127833, 1127957], [1131042, 1133451]]	[[1131364, 1132492]]
NM_001098201	[[1127722, 1127957], [1131042, 1133451]]	[[1131364, 1132492]]

Promoter

Chrom	Start	End	Description
chr7	1126437	1126458	CAGE_peak_5_at_GPER_5end
chr7	1126461	1126486	CAGE_peak_6_at_GPER_5end
chr7	1126745	1126763	CAGE_peak_4_at_GPER_5end
chr7	1126779	1126820	CAGE_peak_2_at_GPER_5end
chr7	1127742	1127762	CAGE_peak_1_at_GPER_5end
chr7	1127812	1127831	CAGE_peak_3_at_GPER_5end
chr7	1130932	1130937	CAGE_peak_7_at_GPER_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I000971	971861	980626	2.71	[{'connected_gene': 'COX19', 'score': 559.81}, {'connected_gene': 'CYP2W1', 'score': 45.73}, {'connected_gene': 'LOC105375120', 'score': 22.3}, {'connected_gene': 'GPR146', 'score': 20.58}, {'connected_gene': 'DNAAF5', 'score': 15.14}, {'connected_gene': 'MIR339', 'score': 13.04}, {'connected_gene': 'ADAP1', 'score': 12.7}, {'connected_gene': 'ENSG00000225146', 'score': 11.64}, {'connected_gene': 'C7orf50', 'score': 11.5}, {'connected_gene': 'SUN1', 'score': 11.08}, {'connected_gene': 'LOC101927021', 'score': 9.4}, {'connected_gene': 'GPER1', 'score': 5.21}, {'connected_gene': 'GET4', 'score': 3.46}, {'connected_gene': 'PRKAR1B', 'score': 1.43}]
chr7	GH07I001191	1191989	1192973	0.88	[{'connected_gene': 'ZFAND2A', 'score': 6.23}, {'connected_gene': 'LOC105375120', 'score': 6.04}, {'connected_gene': 'GPER1', 'score': 4.68}, {'connected_gene': 'GC07P001203', 'score': 0.39}, {'connected_gene': 'GC07P001163', 'score': 0.31}]
chr7	GH07I000962	962804	966199	1.12	[{'connected_gene': 'CYP2W1', 'score': 25.32}, {'connected_gene': 'LOC101927021', 'score': 20.35}, {'connected_gene': 'LOC105375120', 'score': 12.37}, {'connected_gene': 'C7orf50', 'score': 11.16}, {'connected_gene': 'ZFAND2A', 'score': 10.38}, {'connected_gene': 'COX19', 'score': 7.72}, {'connected_gene': 'GPER1', 'score': 6.38}, {'connected_gene': 'PIR60263', 'score': 0.77}, {'connected_gene': 'PIR61474', 'score': 0.77}]
chr7	GH07I001084	1084805	1085602	0.4	[{'connected_gene': 'GPER1', 'score': 0.77}, {'connected_gene': 'PIR42335', 'score': 0.44}, {'connected_gene': 'C7orf50', 'score': 0.23}]
chr7	GH07I001090	1090006	1091400	0.6	[{'connected_gene': 'GPER1', 'score': 19.89}, {'connected_gene': 'LOC105375120', 'score': 12.52}, {'connected_gene': 'PIR42335', 'score': 0.77}, {'connected_gene': 'C7orf50', 'score': 0.25}]
chr7	GH07I001085	1085667	1089471	2.44	[{'connected_gene': 'GPER1', 'score': 556.56}, {'connected_gene': 'LOC105375120', 'score': 22.38}, {'connected_gene': 'LOC101927021', 'score': 13.74}, {'connected_gene': 'ZFAND2A', 'score': 6.53}, {'connected_gene': 'PIR42335', 'score': 0.44}, {'connected_gene': 'C7orf50', 'score': 0.23}]
chr7	GH07I001081	1081685	1082443	0.62	[{'connected_gene': 'GPER1', 'score': 550.77}, {'connected_gene': 'ENSG00000226291', 'score': 550.77}, {'connected_gene': 'LOC101927021', 'score': 58.76}, {'connected_gene': 'C7orf50', 'score': 0.22}]
chr7	GH07I001083	1083617	1084290	0.2	[{'connected_gene': 'GPER1', 'score': 550.77}, {'connected_gene': 'LOC101927021', 'score': 57.31}, {'connected_gene': 'PIR42335', 'score': 0.44}, {'connected_gene': 'C7orf50', 'score': 0.23}]
chr7	GH07I001043	1043234	1046238	1.71	[{'connected_gene': 'GPR146', 'score': 550.77}, {'connected_gene': 'LOC105375120', 'score': 44.37}, {'connected_gene': 'ZFAND2A', 'score': 18.83}, {'connected_gene': 'MIR339', 'score': 12.76}, {'connected_gene': 'CYP2W1', 'score': 12.24}, {'connected_gene': 'COX19', 'score': 11.35}, {'connected_gene': 'LOC101927021', 'score': 11.15}, {'connected_gene': 'C7orf50', 'score': 10.44}, {'connected_gene': 'GPER1', 'score': 9.06}, {'connected_gene': 'PIR31890', 'score': 0.77}, {'connected_gene': 'GC07M001041', 'score': 0.37}, {'connected_gene': 'ENSG00000225146', 'score': 0.37}]
chr7	GH07I001051	1051994	1056800	1.76	[{'connected_gene': 'GPR146', 'score': 550.44}, {'connected_gene': 'LOC105375120', 'score': 48.03}, {'connected_gene': 'LOC101927021', 'score': 43.94}, {'connected_gene': 'ZFAND2A', 'score': 13.04}, {'connected_gene': 'COX19', 'score': 12.46}, {'connected_gene': 'GPER1', 'score': 5.54}, {'connected_gene': 'FAM20C', 'score': 4.88}, {'connected_gene': 'GC07P001058', 'score': 0.77}, {'connected_gene': 'ENSG00000257607', 'score': 0.77}, {'connected_gene': 'GC07M001041', 'score': 0.44}, {'connected_gene': 'PIR31890', 'score': 0.44}, {'connected_gene': 'C7orf50', 'score': 0.18}]
chr7	GH07I001065	1065338	1067189	1.3	[{'connected_gene': 'LOC105375120', 'score': 48.03}, {'connected_gene': 'LOC101927021', 'score': 46.17}, {'connected_gene': 'ZFAND2A', 'score': 19.18}, {'connected_gene': 'GPER1', 'score': 4.98}, {'connected_gene': 'GC07P001069', 'score': 0.77}, {'connected_gene': 'GC07M001041', 'score': 0.44}, {'connected_gene': 'C7orf50', 'score': 0.19}]
chr7	GH07I001105	1105970	1107463	0.4	[{'connected_gene': 'LOC105375120', 'score': 20.31}, {'connected_gene': 'LOC101927021', 'score': 20.27}, {'connected_gene': 'C7orf50', 'score': 12.06}, {'connected_gene': 'MIR339', 'score': 11.33}, {'connected_gene': 'GPR146', 'score': 11.24}, {'connected_gene': 'ENSG00000225146', 'score': 11.21}, {'connected_gene': 'ZFAND2A', 'score': 11.16}, {'connected_gene': 'GPER1', 'score': 11.04}, {'connected_gene': 'PIR59593', 'score': 0.77}, {'connected_gene': 'PIR42335', 'score': 0.39}]
chr7	GH07I001075	1075445	1077000	0.94	[{'connected_gene': 'LOC105375120', 'score': 568.21}, {'connected_gene': 'LOC101927021', 'score': 53.32}, {'connected_gene': 'GPER1', 'score': 11.58}, {'connected_gene': 'ENSG00000226291', 'score': 0.77}, {'connected_gene': 'C7orf50', 'score': 0.21}]
chr7	GH07I001122	1122775	1125802	1.04	[{'connected_gene': 'LOC102723758', 'score': 550.77}, {'connected_gene': 'LOC101927021', 'score': 49.61}, {'connected_gene': 'GPR146', 'score': 16.3}, {'connected_gene': 'LOC105375120', 'score': 15.75}, {'connected_gene': 'ZFAND2A', 'score': 12.37}, {'connected_gene': 'CYP2W1', 'score': 11.65}, {'connected_gene': 'ENSG00000225146', 'score': 11.24}, {'connected_gene': 'MIR339', 'score': 10.61}, {'connected_gene': 'GPER1', 'score': 8.06}, {'connected_gene': 'PIR49984', 'score': 0.77}, {'connected_gene': 'C7orf50', 'score': 0.39}]
chr7	GH07I001100	1100043	1102212	1.29	[{'connected_gene': 'LOC101927021', 'score': 59.63}, {'connected_gene': 'ZFAND2A', 'score': 32.87}, {'connected_gene': 'LOC105375120', 'score': 32.27}, {'connected_gene': 'GPER1', 'score': 19.59}, {'connected_gene': 'C7orf50', 'score': 11.52}, {'connected_gene': 'MIR339', 'score': 11.36}, {'connected_gene': 'GPR146', 'score': 11.06}, {'connected_gene': 'ENSG00000225146', 'score': 11.03}, {'connected_gene': 'ADAP1', 'score': 10.8}, {'connected_gene': 'TMEM184A', 'score': 3.36}, {'connected_gene': 'SUN1', 'score': 1.74}, {'connected_gene': 'PIR59593', 'score': 0.44}, {'connected_gene': 'PIR42335', 'score': 0.44}]
chr7	GH07I001099	1099636	1099880	0.84	[{'connected_gene': 'LOC101927021', 'score': 32.47}, {'connected_gene': 'GPER1', 'score': 17.96}, {'connected_gene': 'C7orf50', 'score': 11.52}, {'connected_gene': 'MIR339', 'score': 11.36}, {'connected_gene': 'GPR146', 'score': 11.06}, {'connected_gene': 'ENSG00000225146', 'score': 11.03}, {'connected_gene': 'ADAP1', 'score': 10.8}, {'connected_gene': 'TMEM184A', 'score': 3.23}, {'connected_gene': 'SUN1', 'score': 1.29}, {'connected_gene': 'PIR59593', 'score': 0.44}, {'connected_gene': 'PIR42335', 'score': 0.44}]
chr7	GH07I001078	1078520	1079004	0.79	[{'connected_gene': 'LOC101927021', 'score': 57.94}, {'connected_gene': 'GPR146', 'score': 12.56}, {'connected_gene': 'ENSG00000225146', 'score': 12.51}, {'connected_gene': 'C7orf50', 'score': 12.49}, {'connected_gene': 'ZFAND2A', 'score': 11.33}, {'connected_gene': 'ADAP1', 'score': 11.3}, {'connected_gene': 'GPER1', 'score': 5.8}, {'connected_gene': 'LOC105375120', 'score': 0.77}, {'connected_gene': 'ENSG00000226291', 'score': 0.77}]
chr7	GH07I001102	1102684	1105553	1.21	[{'connected_gene': 'LOC101927021', 'score': 45.26}, {'connected_gene': 'LOC105375120', 'score': 31.97}, {'connected_gene': 'GPER1', 'score': 19.8}, {'connected_gene': 'C7orf50', 'score': 12.34}, {'connected_gene': 'MIR339', 'score': 11.57}, {'connected_gene': 'GPR146', 'score': 11.47}, {'connected_gene': 'ZFAND2A', 'score': 11.39}, {'connected_gene': 'ENSG00000225146', 'score': 11.21}, {'connected_gene': 'ADAP1', 'score': 11.21}, {'connected_gene': 'PIR59593', 'score': 0.77}, {'connected_gene': 'PIR42335', 'score': 0.39}]
chr7	GH07I001092	1092825	1093040	1.04	[{'connected_gene': 'PIR42335', 'score': 550.77}, {'connected_gene': 'LOC105375120', 'score': 22.22}, {'connected_gene': 'COX19', 'score': 6.32}, {'connected_gene': 'GPER1', 'score': 0.39}, {'connected_gene': 'C7orf50', 'score': 0.25}]
chr7	GH07I001049	1049001	1050000	1.05	[{'connected_gene': 'PIR31890', 'score': 550.77}, {'connected_gene': 'LOC105375120', 'score': 44.39}, {'connected_gene': 'COX19', 'score': 10.32}, {'connected_gene': 'GPER1', 'score': 5.32}, {'connected_gene': 'GPR146', 'score': 0.77}, {'connected_gene': 'GC07P001058', 'score': 0.44}, {'connected_gene': 'GC07M001041', 'score': 0.39}, {'connected_gene': 'C7orf50', 'score': 0.17}]
chr7	GH07I001058	1058425	1061325	1.45	[{'connected_gene': 'GC07M001041', 'score': 550.77}, {'connected_gene': 'PIR54334', 'score': 550.77}, {'connected_gene': 'ENSG00000257607', 'score': 550.77}, {'connected_gene': 'LOC105375120', 'score': 47.99}, {'connected_gene': 'LOC101927021', 'score': 31.42}, {'connected_gene': 'ZFAND2A', 'score': 9.69}, {'connected_gene': 'COX19', 'score': 6.65}, {'connected_gene': 'GPER1', 'score': 5.06}, {'connected_gene': 'MAFK', 'score': 3.97}, {'connected_gene': 'ADAP1', 'score': 3.09}, {'connected_gene': 'GPR146', 'score': 0.37}, {'connected_gene': 'C7orf50', 'score': 0.18}]
chr7	GH07I001022	1022758	1030186	2.19	[{'connected_gene': 'PIR42102', 'score': 550.77}, {'connected_gene': 'LOC105375120', 'score': 43.66}, {'connected_gene': 'LOC101927021', 'score': 34.49}, {'connected_gene': 'CYP2W1', 'score': 24.97}, {'connected_gene': 'ZFAND2A', 'score': 18.07}, {'connected_gene': 'COX19', 'score': 12.52}, {'connected_gene': 'DNAAF5', 'score': 10.9}, {'connected_gene': 'SUN1', 'score': 9.78}, {'connected_gene': 'GPER1', 'score': 7.97}, {'connected_gene': 'FAM20C', 'score': 5.05}, {'connected_gene': 'MIR339', 'score': 0.77}, {'connected_gene': 'ENSG00000225146', 'score': 0.77}, {'connected_gene': 'C7orf50', 'score': 0.14}]
chr7	GH07I001126	1126693	1127487	0.38	[{'connected_gene': 'PIR49984', 'score': 550.77}, {'connected_gene': 'LOC101927021', 'score': 12.38}, {'connected_gene': 'ZFAND2A', 'score': 12.38}, {'connected_gene': 'CYP2W1', 'score': 11.65}, {'connected_gene': 'GPR146', 'score': 11.26}, {'connected_gene': 'ENSG00000225146', 'score': 11.24}, {'connected_gene': 'MIR339', 'score': 10.61}, {'connected_gene': 'GPER1', 'score': 8.06}, {'connected_gene': 'LOC102723758', 'score': 0.77}, {'connected_gene': 'C7orf50', 'score': 0.39}]
chr7	GH07I001110	1110220	1110741	0.2	[{'connected_gene': 'PIR59593', 'score': 550.77}, {'connected_gene': 'LOC101927021', 'score': 46.69}, {'connected_gene': 'C7orf50', 'score': 12.08}, {'connected_gene': 'MIR339', 'score': 11.33}, {'connected_gene': 'GPR146', 'score': 11.23}, {'connected_gene': 'ENSG00000225146', 'score': 11.21}, {'connected_gene': 'ZFAND2A', 'score': 11.16}, {'connected_gene': 'GPER1', 'score': 8.63}, {'connected_gene': 'PIR46511', 'score': 0.44}]