PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000419783	[[49394608, 49395180], [49395459, 49396033]]	[[49394820, 49395180], [49395459, 49395711]]
ENST00000419349	[[49394610, 49395716]]	[[49395414, 49395711]]
ENST00000496791	[[49395040, 49395321], [49395459, 49395758]]	None
NM_201397	[[49394603, 49396033]]	[[49395414, 49395711]]
NM_001329502	[[49394603, 49395321], [49395459, 49396033]]	[[49395258, 49395321], [49395459, 49395711]]
NM_001329503	[[49394603, 49395199], [49395459, 49396033]]	[[49394938, 49395199], [49395459, 49395711]]
NM_000581	[[49394603, 49395180], [49395459, 49396033]]	[[49394820, 49395180], [49395459, 49395711]]
NM_001329455	[[49394603, 49395180], [49395597, 49396033]]	[[49394820, 49395180], [49395597, 49395711]]

Promoter

Chrom	Start	End	Description
chr3	49395773	49395819	CAGE_peak_1_at_GPX1_5end
chr3	49395892	49395915	CAGE_peak_6_at_GPX1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I049924	49924465	49931909	2.25	[{'connected_gene': 'MON1A', 'score': 550.77}, {'connected_gene': 'RBM6', 'score': 43.9}, {'connected_gene': 'CDHR4', 'score': 8.77}, {'connected_gene': 'GPX1', 'score': 4.73}, {'connected_gene': 'SEMA3F-AS1', 'score': 4.44}, {'connected_gene': 'HYAL1', 'score': 3.64}, {'connected_gene': 'GC03P049904', 'score': 0.34}, {'connected_gene': 'LOC102724438', 'score': 0.31}, {'connected_gene': 'GC03P049762', 'score': 0.1}, {'connected_gene': 'GC03P049763', 'score': 0.1}]
chr3	GH03I049356	49356166	49360407	2.22	[{'connected_gene': 'GPX1', 'score': 550.77}, {'connected_gene': 'GC03M049358', 'score': 550.77}, {'connected_gene': 'GC03M049359', 'score': 550.77}, {'connected_gene': 'AMT', 'score': 44.92}, {'connected_gene': 'QRICH1', 'score': 23.62}, {'connected_gene': 'RBM5', 'score': 20.29}, {'connected_gene': 'RBM6', 'score': 19.63}, {'connected_gene': 'SEMA3F-AS1', 'score': 17.68}, {'connected_gene': 'RHOA-IT1', 'score': 15.9}, {'connected_gene': 'USP19', 'score': 15.43}, {'connected_gene': 'RASSF1', 'score': 13.78}, {'connected_gene': 'ATRIP', 'score': 13.35}, {'connected_gene': 'TMEM89', 'score': 13.11}, {'connected_gene': 'FAM212A', 'score': 11.91}, {'connected_gene': 'CCDC71', 'score': 11.8}, {'connected_gene': 'IP6K2', 'score': 10.79}, {'connected_gene': 'QARS', 'score': 10.78}, {'connected_gene': 'ENSG00000235236', 'score': 9.9}, {'connected_gene': 'WDR6', 'score': 9.85}, {'connected_gene': 'HYAL3', 'score': 4.82}, {'connected_gene': 'RHOA', 'score': 0.23}]
chr3	GH03I049362	49361059	49361665	0.84	[{'connected_gene': 'GPX1', 'score': 0.77}, {'connected_gene': 'RHOA-IT1', 'score': 0.44}, {'connected_gene': 'RHOA', 'score': 0.23}]
chr3	GH03I049361	49361999	49363639	0.38	[{'connected_gene': 'AMT', 'score': 44.03}, {'connected_gene': 'RHOA-IT1', 'score': 0.77}, {'connected_gene': 'GPX1', 'score': 0.77}, {'connected_gene': 'RHOA', 'score': 0.23}]