PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000366971	[[213031596, 213032532], [213037066, 213037211], [213046019, 213046160], [213056712, 213056780], [213058634, 213058738], [213061232, 213061343], [213061830, 213061936], [213062487, 213062599], [213068327, 213068395], [213068557, 213072705]]	[[213031794, 213032532], [213037066, 213037211], [213046019, 213046160], [213056712, 213056780], [213058634, 213058738], [213061232, 213061343], [213061830, 213061936], [213062487, 213062599], [213068327, 213068395], [213068557, 213068632]]
ENST00000419102	[[213032257, 213032532], [213037066, 213037211], [213056712, 213056780], [213058634, 213058738], [213061232, 213061343], [213061830, 213061936], [213062487, 213062599], [213068327, 213068395], [213068557, 213068676]]	[[213032257, 213032532], [213037066, 213037211], [213056712, 213056780], [213058634, 213058738], [213061232, 213061343], [213061830, 213061936], [213062487, 213062599], [213068327, 213068395], [213068557, 213068632]]
ENST00000579295	[[213036972, 213037211], [213037734, 213037861], [213043395, 213043508]]	None
ENST00000474693	[[213037753, 213037861], [213046019, 213046160], [213056712, 213056780], [213058634, 213058907]]	None
ENST00000483790	[[213056750, 213056780], [213058634, 213058738], [213061830, 213061936], [213062487, 213062599], [213068327, 213068395], [213068557, 213068736]]	None
NM_014053	[[213031596, 213032532], [213037066, 213037211], [213046019, 213046160], [213056712, 213056780], [213058634, 213058738], [213061232, 213061343], [213061830, 213061936], [213062487, 213062599], [213068327, 213068395], [213068557, 213072705]]	[[213031794, 213032532], [213037066, 213037211], [213046019, 213046160], [213056712, 213056780], [213058634, 213058738], [213061232, 213061343], [213061830, 213061936], [213062487, 213062599], [213068327, 213068395], [213068557, 213068632]]

Promoter

Chrom	Start	End	Description
chr1	213031570	213031595	CAGE_peak_2_at_FLVCR1_5end
chr1	213031609	213031635	CAGE_peak_1_at_FLVCR1_5end
chr1	213031644	213031658	CAGE_peak_3_at_FLVCR1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I212594	212594814	212598098	1.76	[{'connected_gene': 'ANGEL2', 'score': 24.66}, {'connected_gene': 'ATF3', 'score': 19.14}, {'connected_gene': 'FAM71A', 'score': 11.59}, {'connected_gene': 'ENSG00000235862', 'score': 11.57}, {'connected_gene': 'BATF3', 'score': 10.38}, {'connected_gene': 'FLVCR1', 'score': 10.24}, {'connected_gene': 'TMEM206', 'score': 9.75}, {'connected_gene': 'PPP2R5A', 'score': 1.36}, {'connected_gene': 'GC01M212615', 'score': 0.37}]
chr1	GH01I212995	212995599	212995728	0.79	[{'connected_gene': 'VASH2', 'score': 11.43}, {'connected_gene': 'FLVCR1-AS1', 'score': 11.18}, {'connected_gene': 'FLVCR1', 'score': 11.18}, {'connected_gene': 'ENSG00000235182', 'score': 11.17}, {'connected_gene': 'RPS28P2', 'score': 11.17}, {'connected_gene': 'BATF3', 'score': 10.67}, {'connected_gene': 'ANGEL2', 'score': 0.34}]
chr1	GH01I212306	212306764	212308276	0.77	[{'connected_gene': 'RPL23AP18', 'score': 550.77}, {'connected_gene': 'INTS7', 'score': 20.98}, {'connected_gene': 'FLVCR1', 'score': 18.62}, {'connected_gene': 'ANGEL2', 'score': 16.63}, {'connected_gene': 'TMEM206', 'score': 16.05}, {'connected_gene': 'DTL', 'score': 11.05}, {'connected_gene': 'RPL21P28', 'score': 11.02}, {'connected_gene': 'ENSG00000230063', 'score': 0.39}, {'connected_gene': 'PPP2R5A', 'score': 0.34}, {'connected_gene': 'ENSG00000234915', 'score': 0.34}]
chr1	GH01I212856	212856786	212861251	2.11	[{'connected_gene': 'FLVCR1-AS1', 'score': 631.46}, {'connected_gene': 'FLVCR1', 'score': 573.98}, {'connected_gene': 'ANGEL2', 'score': 11.49}, {'connected_gene': 'TATDN3', 'score': 10.98}, {'connected_gene': 'SPATA45', 'score': 10.95}, {'connected_gene': 'GC01M212767', 'score': 0.77}, {'connected_gene': 'GC01P212844', 'score': 0.37}]
chr1	GH01I212832	212832632	212834793	0.67	[{'connected_gene': 'FLVCR1-AS1', 'score': 32.92}, {'connected_gene': 'FLVCR1', 'score': 12.53}, {'connected_gene': 'RPS28P2', 'score': 12.53}, {'connected_gene': 'TATDN3', 'score': 11.21}, {'connected_gene': 'VASH2', 'score': 10.29}, {'connected_gene': 'SPATA45', 'score': 7.54}, {'connected_gene': 'NSL1', 'score': 5.14}, {'connected_gene': 'GC01P212844', 'score': 0.44}, {'connected_gene': 'GC01P212825', 'score': 0.44}, {'connected_gene': 'GC01M212767', 'score': 0.31}]
chr1	GH01I212793	212793823	212795234	1.19	[{'connected_gene': 'FLVCR1-AS1', 'score': 21.51}, {'connected_gene': 'TATDN3', 'score': 18.87}, {'connected_gene': 'FLVCR1', 'score': 15.22}, {'connected_gene': 'SPATA45', 'score': 10.79}, {'connected_gene': 'RPS5P4', 'score': 0.31}, {'connected_gene': 'GC01M212767', 'score': 0.2}]
chr1	GH01I212906	212906642	212910792	0.88	[{'connected_gene': 'FLVCR1-AS1', 'score': 41.89}, {'connected_gene': 'TATDN3', 'score': 10.67}, {'connected_gene': 'FLVCR1', 'score': 8.78}, {'connected_gene': 'SPATA45', 'score': 8.29}, {'connected_gene': 'ENSG00000282718', 'score': 0.44}, {'connected_gene': 'GC01M212767', 'score': 0.25}, {'connected_gene': 'GC01P212844', 'score': 0.2}]
chr1	GH01I212831	212831801	212832200	0.54	[{'connected_gene': 'FLVCR1-AS1', 'score': 34.24}, {'connected_gene': 'ENSG00000235182', 'score': 13.38}, {'connected_gene': 'RPS28P2', 'score': 13.38}, {'connected_gene': 'FLVCR1', 'score': 13.35}, {'connected_gene': 'VASH2', 'score': 10.78}, {'connected_gene': 'BATF3', 'score': 10.54}, {'connected_gene': 'GC01P212825', 'score': 0.44}, {'connected_gene': 'GC01P212844', 'score': 0.39}, {'connected_gene': 'SPATA45', 'score': 0.37}, {'connected_gene': 'GC01M212767', 'score': 0.29}]
chr1	GH01I212880	212880075	212880248	0.38	[{'connected_gene': 'FLVCR1-AS1', 'score': 74.3}, {'connected_gene': 'RPS28P2', 'score': 12.52}, {'connected_gene': 'FLVCR1', 'score': 12.52}, {'connected_gene': 'ENSG00000235182', 'score': 12.49}, {'connected_gene': 'VASH2', 'score': 11.04}, {'connected_gene': 'GC01M212767', 'score': 0.37}, {'connected_gene': 'ENSG00000282718', 'score': 0.28}, {'connected_gene': 'GC01P212844', 'score': 0.28}]
chr1	GH01I212819	212819201	212820329	0.97	[{'connected_gene': 'FLVCR1-AS1', 'score': 33.73}, {'connected_gene': 'ENSG00000235182', 'score': 12.65}, {'connected_gene': 'RPS28P2', 'score': 12.64}, {'connected_gene': 'FLVCR1', 'score': 12.64}, {'connected_gene': 'TATDN3', 'score': 11.97}, {'connected_gene': 'VASH2', 'score': 10.93}, {'connected_gene': 'BATF3', 'score': 10.39}, {'connected_gene': 'RPS5P4', 'score': 0.77}, {'connected_gene': 'GC01M212767', 'score': 0.26}]
chr1	GH01I212827	212827039	212829099	0.78	[{'connected_gene': 'FLVCR1-AS1', 'score': 34.72}, {'connected_gene': 'ENSG00000235182', 'score': 13.35}, {'connected_gene': 'RPS28P2', 'score': 13.35}, {'connected_gene': 'FLVCR1', 'score': 13.34}, {'connected_gene': 'TATDN3', 'score': 11.94}, {'connected_gene': 'VASH2', 'score': 10.78}, {'connected_gene': 'BATF3', 'score': 10.56}, {'connected_gene': 'GC01P212825', 'score': 0.77}, {'connected_gene': 'GC01P212844', 'score': 0.37}, {'connected_gene': 'GC01M212767', 'score': 0.29}]
chr1	GH01I212605	212605186	212610401	2.33	[{'connected_gene': 'ATF3', 'score': 562.88}, {'connected_gene': 'ANGEL2', 'score': 20.72}, {'connected_gene': 'FLVCR1', 'score': 11.25}, {'connected_gene': 'BATF3', 'score': 10.93}, {'connected_gene': 'GC01M212615', 'score': 0.44}]
chr1	GH01I212565	212565996	212568199	1.41	[{'connected_gene': 'ATF3', 'score': 550.77}, {'connected_gene': 'ANGEL2', 'score': 16.65}, {'connected_gene': 'FLVCR1', 'score': 10.23}, {'connected_gene': 'GC01M212615', 'score': 0.25}]
chr1	GH01I212899	212899627	212900665	0.31	[{'connected_gene': 'FLVCR1', 'score': 32.13}, {'connected_gene': 'VASH2', 'score': 11.19}, {'connected_gene': 'FLVCR1-AS1', 'score': 8.78}, {'connected_gene': 'ENSG00000282718', 'score': 0.37}, {'connected_gene': 'GC01M212767', 'score': 0.28}, {'connected_gene': 'GC01P212844', 'score': 0.22}]
chr1	GH01I212631	212631991	212633114	0.49	[{'connected_gene': 'FLVCR1', 'score': 4.55}, {'connected_gene': 'LOC105372909', 'score': 0.44}, {'connected_gene': 'ENSG00000235862', 'score': 0.44}, {'connected_gene': 'LOC102723761', 'score': 0.29}]
chr1	GH01I212873	212873099	212873248	0.52	[{'connected_gene': 'FLVCR1', 'score': 33.99}, {'connected_gene': 'GC01M212767', 'score': 0.39}, {'connected_gene': 'GC01P212844', 'score': 0.31}, {'connected_gene': 'ENSG00000282718', 'score': 0.26}]
chr1	GH01I212749	212749439	212750799	1	[{'connected_gene': 'TATDN3', 'score': 20.49}, {'connected_gene': 'SNORA16B', 'score': 15.96}, {'connected_gene': 'BATF3', 'score': 11.86}, {'connected_gene': 'ANGEL2', 'score': 11.45}, {'connected_gene': 'FLVCR1', 'score': 10.96}, {'connected_gene': 'PIR52879', 'score': 0.34}, {'connected_gene': 'NSL1', 'score': 0.26}]
chr1	GH01I212789	212789419	212793774	2.16	[{'connected_gene': 'TATDN3', 'score': 575.92}, {'connected_gene': 'NSL1', 'score': 550.77}, {'connected_gene': 'FLVCR1', 'score': 44.82}, {'connected_gene': 'FLVCR1-AS1', 'score': 33.77}, {'connected_gene': 'ANGEL2', 'score': 30.01}, {'connected_gene': 'RPL21P28', 'score': 20.02}, {'connected_gene': 'ENSG00000235182', 'score': 11.76}, {'connected_gene': 'RPS28P2', 'score': 11.76}, {'connected_gene': 'VASH2', 'score': 11.23}, {'connected_gene': 'BATF3', 'score': 11.13}, {'connected_gene': 'PIR52879', 'score': 0.21}, {'connected_gene': 'GC01M212767', 'score': 0.19}]
chr1	GH01I212228	212228139	212229934	1.12	[{'connected_gene': 'LOC101929541', 'score': 21.24}, {'connected_gene': 'PPP2R5A', 'score': 16.33}, {'connected_gene': 'FLVCR1', 'score': 4.22}, {'connected_gene': 'GC01P212241', 'score': 0.39}, {'connected_gene': 'GC01M212205', 'score': 0.34}]
chr1	GH01I212260	212260423	212262151	1.31	[{'connected_gene': 'LOC101929541', 'score': 40.63}, {'connected_gene': 'PPP2R5A', 'score': 25.56}, {'connected_gene': 'FLVCR1', 'score': 4.29}, {'connected_gene': 'GC01P212241', 'score': 0.37}]
chr1	GH01I212271	212271540	212273078	0.63	[{'connected_gene': 'LOC101929541', 'score': 42.57}, {'connected_gene': 'FLVCR1', 'score': 4.35}, {'connected_gene': 'GC01P212241', 'score': 0.29}]
chr1	GH01I212557	212557540	212562360	2	[{'connected_gene': 'ENSG00000260805', 'score': 557.4}, {'connected_gene': 'GC01M212558', 'score': 550.77}, {'connected_gene': 'ANGEL2', 'score': 11.43}, {'connected_gene': 'FLVCR1', 'score': 10.88}, {'connected_gene': 'ATF3', 'score': 0.44}]
chr1	GH01I212915	212914566	212917377	1.44	[{'connected_gene': 'ENSG00000282718', 'score': 550.77}, {'connected_gene': 'FLVCR1-AS1', 'score': 66.22}, {'connected_gene': 'FLVCR1', 'score': 25.41}, {'connected_gene': 'TATDN3', 'score': 10.83}, {'connected_gene': 'SPATA45', 'score': 5.02}, {'connected_gene': 'VASH2', 'score': 4.13}, {'connected_gene': 'GC01M212767', 'score': 0.23}, {'connected_gene': 'GC01P212844', 'score': 0.19}]
chr1	GH01I212862	212862001	212862600	0.59	[{'connected_gene': 'GC01M212767', 'score': 550.77}, {'connected_gene': 'FLVCR1-AS1', 'score': 62.73}, {'connected_gene': 'FLVCR1', 'score': 34.36}, {'connected_gene': 'GC01P212844', 'score': 0.37}]