PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000609686	[[13693164, 13717573], [13719958, 13720197], [13722763, 13722951], [13724737, 13724898], [13761536, 13761766], [13764658, 13764784], [13768047, 13768201], [13768426, 13768598], [13769388, 13769591], [13828678, 13828793], [13906250, 13906849], [14018731, 14019160], [14132861, 14133053]]	[[13715716, 13717573], [13719958, 13720197], [13722763, 13722951], [13724737, 13724898], [13761536, 13761766], [13764658, 13764784], [13768047, 13768201], [13768426, 13768598], [13769388, 13769591], [13828678, 13828793], [13906250, 13906849], [14018731, 14019142]]
NM_000834	[[13714409, 13717573], [13719958, 13720197], [13722763, 13722951], [13724737, 13724898], [13761536, 13761766], [13764658, 13764784], [13768047, 13768201], [13768426, 13768598], [13769388, 13769591], [13828678, 13828793], [13906250, 13906849], [14018731, 14019160], [14132861, 14133022]]	[[13715716, 13717573], [13719958, 13720197], [13722763, 13722951], [13724737, 13724898], [13761536, 13761766], [13764658, 13764784], [13768047, 13768201], [13768426, 13768598], [13769388, 13769591], [13828678, 13828793], [13906250, 13906849], [14018731, 14019142]]

Promoter

Chrom	Start	End	Description
chr12	14133154	14133159	CAGE_peak_4_at_GRIN2B_5end
chr12	14133348	14133359	CAGE_peak_1_at_GRIN2B_5end
chr12	14133429	14133438	CAGE_peak_3_at_GRIN2B_5end
chr12	14133540	14133551	CAGE_peak_2_at_GRIN2B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I013806	13806792	13807080	0.22	[{'connected_gene': 'FAM234B', 'score': 4.84}, {'connected_gene': 'GRIN2B', 'score': 1.89}, {'connected_gene': 'GC12P013804', 'score': 0.77}, {'connected_gene': 'GC12P013812', 'score': 0.44}]
chr12	GH12I013980	13980410	13980469	0.68	[{'connected_gene': 'GRIN2B', 'score': 550.77}, {'connected_gene': 'MGP', 'score': 4.81}, {'connected_gene': 'GC12P013958', 'score': 0.34}]
chr12	GH12I014167	14167147	14167296	0.56	[{'connected_gene': 'GRIN2B', 'score': 4.76}, {'connected_gene': 'ENSG00000256346', 'score': 0.77}, {'connected_gene': 'PIR60905', 'score': 0.28}, {'connected_gene': 'GC12P014132', 'score': 0.28}]
chr12	GH12I013704	13704200	13704423	0.22	[{'connected_gene': 'GRIN2B', 'score': 1.2}, {'connected_gene': 'GC12P013694', 'score': 0.44}, {'connected_gene': 'GC12P013718', 'score': 0.39}]
chr12	GH12I013950	13950627	13950776	0.6	[{'connected_gene': 'GRIN2B', 'score': 5.0}, {'connected_gene': 'GC12P013953', 'score': 0.77}, {'connected_gene': 'GC12P013943', 'score': 0.44}]
chr12	GH12I013825	13825565	13825832	0.34	[{'connected_gene': 'GRIN2B', 'score': 4.7}, {'connected_gene': 'GC12M013816', 'score': 0.77}, {'connected_gene': 'GC12P013812', 'score': 0.39}]
chr12	GH12I013659	13659327	13659587	0.33	[{'connected_gene': 'GRIN2B', 'score': 5.82}, {'connected_gene': 'GC12P013639', 'score': 0.34}, {'connected_gene': 'GC12P013684', 'score': 0.34}]
chr12	GH12I013934	13934902	13934961	0.61	[{'connected_gene': 'GRIN2B', 'score': 550.25}, {'connected_gene': 'GC12P013943', 'score': 0.44}, {'connected_gene': 'GC12P013894', 'score': 0.26}]
chr12	GH12I013982	13982147	13982296	0.43	[{'connected_gene': 'GRIN2B', 'score': 550.77}, {'connected_gene': 'GC12M013988', 'score': 0.44}]
chr12	GH12I013490	13490153	13490164	0.23	[{'connected_gene': 'RNU6-590P', 'score': 10.96}, {'connected_gene': 'GC12M013460', 'score': 0.29}, {'connected_gene': 'ENSG00000256306', 'score': 0.28}, {'connected_gene': 'GRIN2B', 'score': 0.04}]
chr12	GH12I013578	13578070	13582950	0.62	[{'connected_gene': 'LOC105369668', 'score': 550.77}, {'connected_gene': 'ENSG00000256306', 'score': 11.2}, {'connected_gene': 'GC12M013564', 'score': 0.39}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013583	13583141	13584216	0.2	[{'connected_gene': 'LOC105369668', 'score': 550.77}, {'connected_gene': 'GC12P013596', 'score': 0.39}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013661	13661407	13661556	0.54	[{'connected_gene': 'GC12P013639', 'score': 0.34}, {'connected_gene': 'GC12P013684', 'score': 0.34}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013864	13864227	13864376	0.56	[{'connected_gene': 'GC12P013875', 'score': 0.39}, {'connected_gene': 'GC12P013835', 'score': 0.31}, {'connected_gene': 'GRIN2B', 'score': 0.13}]
chr12	GH12I013749	13749243	13749756	0.31	[{'connected_gene': 'GC12P013745', 'score': 0.77}, {'connected_gene': 'GC12P013746', 'score': 0.77}, {'connected_gene': 'GC12P013756', 'score': 0.44}, {'connected_gene': 'GRIN2B', 'score': 0.07}]
chr12	GH12I013887	13887927	13888076	0.46	[{'connected_gene': 'GC12P013891', 'score': 0.77}, {'connected_gene': 'GC12P013875', 'score': 0.39}, {'connected_gene': 'GRIN2B', 'score': 0.16}]
chr12	GH12I013959	13959310	13959392	0.34	[{'connected_gene': 'GC12P013958', 'score': 550.77}, {'connected_gene': 'GRIN2B', 'score': 8.58}]
chr12	GH12I013534	13534601	13535056	0.74	[{'connected_gene': 'ENSG00000277935', 'score': 0.44}, {'connected_gene': 'ENSG00000256306', 'score': 0.44}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013557	13557584	13561722	0.56	[{'connected_gene': 'GC12M013564', 'score': 0.44}, {'connected_gene': 'ENSG00000277935', 'score': 0.37}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013800	13799167	13799316	0.2	[{'connected_gene': 'GC12P013804', 'score': 0.44}, {'connected_gene': 'PIR39908', 'score': 0.37}, {'connected_gene': 'GRIN2B', 'score': 0.09}]
chr12	GH12I013799	13799647	13799876	0.31	[{'connected_gene': 'GC12P013804', 'score': 0.77}, {'connected_gene': 'PIR39908', 'score': 0.37}, {'connected_gene': 'GRIN2B', 'score': 0.09}]
chr12	GH12I013537	13537835	13538420	0.63	[{'connected_gene': 'ENSG00000277935', 'score': 0.77}, {'connected_gene': 'ENSG00000256306', 'score': 0.39}, {'connected_gene': 'GRIN2B', 'score': 0.04}]
chr12	GH12I013941	13941002	13942436	0.95	[{'connected_gene': 'GC12P013943', 'score': 550.77}, {'connected_gene': 'GRIN2B', 'score': 0.26}, {'connected_gene': 'GC12P013894', 'score': 0.25}]
chr12	GH12I013562	13562666	13564782	0.31	[{'connected_gene': 'GC12M013564', 'score': 0.77}, {'connected_gene': 'ENSG00000277935', 'score': 0.34}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013851	13851987	13852116	0.56	[{'connected_gene': 'GC12P013835', 'score': 0.37}, {'connected_gene': 'GC12P013875', 'score': 0.34}, {'connected_gene': 'GRIN2B', 'score': 0.13}]
chr12	GH12I013628	13628883	13629193	0.22	[{'connected_gene': 'GC12P013620', 'score': 0.44}, {'connected_gene': 'GC12P013639', 'score': 0.39}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013739	13739747	13739876	0.6	[{'connected_gene': 'GC12M013744', 'score': 0.77}, {'connected_gene': 'GC12P013729', 'score': 0.39}, {'connected_gene': 'GRIN2B', 'score': 0.07}]
chr12	GH12I013536	13536607	13536756	0.66	[{'connected_gene': 'ENSG00000277935', 'score': 0.77}, {'connected_gene': 'ENSG00000256306', 'score': 0.44}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013566	13566709	13567670	0.2	[{'connected_gene': 'GC12M013564', 'score': 550.77}, {'connected_gene': 'ENSG00000277935', 'score': 0.31}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013727	13727947	13728056	0.46	[{'connected_gene': 'GC12P013729', 'score': 550.77}, {'connected_gene': 'GC12M013744', 'score': 0.37}, {'connected_gene': 'GRIN2B', 'score': 0.07}]
chr12	GH12I013525	13525628	13527233	0.57	[{'connected_gene': 'ENSG00000256306', 'score': 550.77}, {'connected_gene': 'GC12M013460', 'score': 0.2}, {'connected_gene': 'RNU6-590P', 'score': 0.2}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013509	13509628	13509690	0.22	[{'connected_gene': 'ENSG00000256306', 'score': 0.37}, {'connected_gene': 'GC12M013460', 'score': 0.25}, {'connected_gene': 'RNU6-590P', 'score': 0.25}, {'connected_gene': 'GRIN2B', 'score': 0.04}]
chr12	GH12I013524	13524957	13525254	0.25	[{'connected_gene': 'ENSG00000256306', 'score': 550.77}, {'connected_gene': 'GC12M013460', 'score': 0.2}, {'connected_gene': 'RNU6-590P', 'score': 0.2}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013573	13573827	13573976	0.63	[{'connected_gene': 'GC12M013564', 'score': 0.44}, {'connected_gene': 'LOC105369668', 'score': 0.44}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013610	13610007	13610156	0.54	[{'connected_gene': 'GC12P013620', 'score': 0.39}, {'connected_gene': 'GC12P013596', 'score': 0.39}, {'connected_gene': 'LOC105369668', 'score': 0.31}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013569	13569461	13572291	0.94	[{'connected_gene': 'GC12M013564', 'score': 0.77}, {'connected_gene': 'LOC105369668', 'score': 0.39}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013591	13591825	13592626	0.82	[{'connected_gene': 'GC12P013596', 'score': 0.77}, {'connected_gene': 'LOC105369668', 'score': 0.39}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013592	13591587	13591736	0.31	[{'connected_gene': 'GC12P013596', 'score': 0.77}, {'connected_gene': 'LOC105369668', 'score': 0.44}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013576	13576646	13577813	0.2	[{'connected_gene': 'ENSG00000256306', 'score': 11.2}, {'connected_gene': 'LOC105369668', 'score': 0.77}, {'connected_gene': 'GC12M013564', 'score': 0.44}, {'connected_gene': 'GRIN2B', 'score': 0.05}]
chr12	GH12I013595	13595129	13596296	0.58	[{'connected_gene': 'GC12P013596', 'score': 550.77}, {'connected_gene': 'LOC105369668', 'score': 0.39}, {'connected_gene': 'GRIN2B', 'score': 0.05}]