PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000281456	[[186064394, 186064637], [186065917, 186066404], [186066912, 186067053], [186067967, 186071536]]	[[186064526, 186064637], [186065917, 186066404], [186066912, 186067053], [186067967, 186068125]]
ENST00000491736	[[186064431, 186064637], [186065917, 186066404], [186066508, 186067053], [186067967, 186068395]]	[[186064526, 186064637], [186065917, 186066404], [186066508, 186066537]]
NM_001151	[[186064416, 186064637], [186065917, 186066404], [186066912, 186067053], [186067967, 186071538]]	[[186064526, 186064637], [186065917, 186066404], [186066912, 186067053], [186067967, 186068125]]

Promoter

Chrom	Start	End	Description
chr4	186064412	186064426	CAGE_peak_1_at_SLC25A4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I185136	185136833	185138974	0.4	[{'connected_gene': 'CFAP97', 'score': 11.31}, {'connected_gene': 'HELT', 'score': 11.1}, {'connected_gene': 'SLC25A4', 'score': 0.44}, {'connected_gene': 'LOC105377588', 'score': 0.23}]
chr4	GH04I185139	185139649	185140139	0.2	[{'connected_gene': 'CFAP97', 'score': 11.11}, {'connected_gene': 'SLC25A4', 'score': 0.77}, {'connected_gene': 'LOC105377588', 'score': 0.23}]
chr4	GH04I185145	185145405	185145922	0.2	[{'connected_gene': 'HELT', 'score': 11.47}, {'connected_gene': 'SLC25A4', 'score': 0.77}, {'connected_gene': 'GC04P185149', 'score': 0.77}]
chr4	GH04I185106	185106756	185110800	0.66	[{'connected_gene': 'SLC25A4', 'score': 11.94}, {'connected_gene': 'HELT', 'score': 11.13}, {'connected_gene': 'LOC105377588', 'score': 0.34}, {'connected_gene': 'LINC02436', 'score': 0.22}]
chr4	GH04I185115	185115769	185116485	1.32	[{'connected_gene': 'SLC25A4', 'score': 12.33}, {'connected_gene': 'HELT', 'score': 11.28}, {'connected_gene': 'LOC105377588', 'score': 0.31}]
chr4	GH04I185111	185111411	185114417	1.14	[{'connected_gene': 'SLC25A4', 'score': 11.94}, {'connected_gene': 'HELT', 'score': 11.12}, {'connected_gene': 'LOC105377588', 'score': 0.31}]
chr4	GH04I185117	185117280	185117771	0.65	[{'connected_gene': 'SLC25A4', 'score': 12.33}, {'connected_gene': 'HELT', 'score': 11.28}, {'connected_gene': 'LOC105377588', 'score': 0.29}]
chr4	GH04I185118	185118937	185121091	0.73	[{'connected_gene': 'SLC25A4', 'score': 18.47}, {'connected_gene': 'HELT', 'score': 11.27}, {'connected_gene': 'LOC105377588', 'score': 0.29}]
chr4	GH04I185142	185142127	185144223	2.23	[{'connected_gene': 'SLC25A4', 'score': 557.23}, {'connected_gene': 'PRIMPOL', 'score': 12.48}, {'connected_gene': 'CFAP97', 'score': 9.56}, {'connected_gene': 'LOC105377588', 'score': 0.22}]
chr4	GH04I185127	185127088	185129236	1.17	[{'connected_gene': 'SLC25A4', 'score': 5.48}, {'connected_gene': 'PRIMPOL', 'score': 5.09}, {'connected_gene': 'LOC105377588', 'score': 0.26}]
chr4	GH04I185134	185134547	185134696	0.64	[{'connected_gene': 'SLC25A4', 'score': 0.44}, {'connected_gene': 'LOC105377588', 'score': 0.25}]
chr4	GH04I185144	185144801	185145000	0.4	[{'connected_gene': 'SLC25A4', 'score': 550.77}, {'connected_gene': 'GC04P185149', 'score': 0.77}]
chr4	GH04I185086	185086235	185086583	0.56	[{'connected_gene': 'LOC105377588', 'score': 550.77}, {'connected_gene': 'LRP2BP', 'score': 29.12}, {'connected_gene': 'CCDC110', 'score': 21.61}, {'connected_gene': 'HELT', 'score': 11.82}, {'connected_gene': 'CASP3', 'score': 10.28}, {'connected_gene': 'PRIMPOL', 'score': 10.28}, {'connected_gene': 'LINC02436', 'score': 0.29}, {'connected_gene': 'SLC25A4', 'score': 0.22}]
chr4	GH04I185149	185149507	185149656	0.58	[{'connected_gene': 'GC04P185149', 'score': 550.77}, {'connected_gene': 'SLC25A4', 'score': 0.44}, {'connected_gene': 'SNX25', 'score': 0.23}]