PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000567193	[[67261005, 67261127], [67261738, 67261834], [67262257, 67262317], [67262397, 67262784], [67262878, 67263128]]	None
ENST00000563168	[[67261015, 67261127], [67261738, 67263151]]	None
ENST00000304800	[[67261015, 67261127], [67261738, 67261834], [67262257, 67262317], [67262397, 67262534], [67262699, 67262784], [67262878, 67263181]]	[[67261121, 67261127], [67261738, 67261834], [67262257, 67262317], [67262397, 67262534], [67262699, 67262784], [67262878, 67263016]]
ENST00000566486	[[67261020, 67261127], [67261516, 67262205]]	None
ENST00000563953	[[67261022, 67261127], [67261621, 67261834], [67262257, 67262317], [67262397, 67262534], [67262699, 67262784], [67262878, 67263165]]	[[67262445, 67262534], [67262699, 67262784], [67262878, 67263016]]
ENST00000561586	[[67261047, 67261127], [67261738, 67261834], [67262257, 67262317], [67262397, 67262859]]	None
ENST00000562235	[[67261059, 67261127], [67261738, 67261834], [67262257, 67262317], [67262397, 67262560], [67262699, 67262784], [67262878, 67263181]]	[[67261121, 67261127], [67261738, 67261834], [67262257, 67262317], [67262397, 67262538]]
ENST00000565201	[[67261070, 67261127], [67261738, 67261834], [67262257, 67262317], [67262397, 67262534], [67262699, 67263181]]	[[67261121, 67261127], [67261738, 67261834], [67262257, 67262317], [67262397, 67262534], [67262699, 67262823]]
ENST00000564087	[[67261115, 67261127], [67261516, 67261834], [67262257, 67262317], [67262397, 67262525]]	[[67261121, 67261127], [67261516, 67261621]]
ENST00000563426	[[67262420, 67262534], [67262699, 67262739], [67262878, 67263181]]	None
ENST00000563271	[[67262428, 67262739], [67262878, 67263181]]	None
ENST00000564649	[[67262573, 67262784], [67262878, 67263181]]	None
NM_014187	[[67261015, 67261127], [67261738, 67261834], [67262257, 67262317], [67262397, 67262534], [67262699, 67262784], [67262878, 67263182]]	[[67261121, 67261127], [67261738, 67261834], [67262257, 67262317], [67262397, 67262534], [67262699, 67262784], [67262878, 67263016]]
NR_134524	[[67261015, 67261127], [67261738, 67261834], [67262257, 67262317], [67262397, 67262560], [67262699, 67262784], [67262878, 67263182]]	None
NM_001318217	[[67261015, 67261127], [67261621, 67261834], [67262257, 67262317], [67262397, 67262534], [67262699, 67262784], [67262878, 67263182]]	[[67262445, 67262534], [67262699, 67262784], [67262878, 67263016]]

Promoter

Chrom	Start	End	Description
chr16	67261008	67261073	CAGE_peak_1_at_TMEM208_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I067345	67345073	67345940	0.2	[{'connected_gene': 'ATP6V0D1', 'score': 16.33}, {'connected_gene': 'RNU1-123P', 'score': 11.66}, {'connected_gene': 'TPPP3', 'score': 11.66}, {'connected_gene': 'PLEKHG4', 'score': 11.57}, {'connected_gene': 'ZDHHC1', 'score': 11.35}, {'connected_gene': 'HSD11B2', 'score': 11.13}, {'connected_gene': 'LRRC36', 'score': 11.05}, {'connected_gene': 'TMEM208', 'score': 10.26}, {'connected_gene': 'LRRC29', 'score': 10.26}, {'connected_gene': 'ELMO3', 'score': 10.11}, {'connected_gene': 'MIR328', 'score': 10.11}]
chr16	GH16I066977	66977600	66978001	1.36	[{'connected_gene': 'CES2', 'score': 19.71}, {'connected_gene': 'ELMO3', 'score': 14.55}, {'connected_gene': 'CBFB', 'score': 11.33}, {'connected_gene': 'B3GNT9', 'score': 11.21}, {'connected_gene': 'FBXL8', 'score': 11.14}, {'connected_gene': 'TRADD', 'score': 11.14}, {'connected_gene': 'HSF4', 'score': 11.13}, {'connected_gene': 'C16orf70', 'score': 10.91}, {'connected_gene': 'RRAD', 'score': 10.75}, {'connected_gene': 'CDH16', 'score': 10.74}, {'connected_gene': 'MIR328', 'score': 10.64}, {'connected_gene': 'KIAA0895L', 'score': 10.38}, {'connected_gene': 'E2F4', 'score': 10.38}, {'connected_gene': 'EXOC3L1', 'score': 10.38}, {'connected_gene': 'TMEM208', 'score': 9.63}, {'connected_gene': 'LRRC29', 'score': 9.63}, {'connected_gene': 'CES4A', 'score': 0.39}, {'connected_gene': 'CES3', 'score': 0.37}]
chr16	GH16I067718	67718024	67720747	2.04	[{'connected_gene': 'GFOD2', 'score': 555.51}, {'connected_gene': 'RANBP10', 'score': 11.3}, {'connected_gene': 'TSNAXIP1', 'score': 11.3}, {'connected_gene': 'PARD6A', 'score': 10.5}, {'connected_gene': 'ACD', 'score': 10.5}, {'connected_gene': 'TMEM208', 'score': 10.26}, {'connected_gene': 'EDC4', 'score': 10.08}, {'connected_gene': 'DUS2', 'score': 9.38}, {'connected_gene': 'PIR36768', 'score': 0.28}]
chr16	GH16I067235	67235702	67237430	0.86	[{'connected_gene': 'SLC9A5', 'score': 550.77}, {'connected_gene': 'ATP6V0D1', 'score': 15.27}, {'connected_gene': 'MIR328', 'score': 11.96}, {'connected_gene': 'ELMO3', 'score': 11.94}, {'connected_gene': 'LRRC36', 'score': 9.93}, {'connected_gene': 'HSD11B2', 'score': 9.18}, {'connected_gene': 'PARD6A', 'score': 8.91}, {'connected_gene': 'ACD', 'score': 8.91}, {'connected_gene': 'TMEM208', 'score': 0.44}, {'connected_gene': 'FHOD1', 'score': 0.39}]
chr16	GH16I067403	67403051	67408161	1.23	[{'connected_gene': 'LRRC36', 'score': 17.03}, {'connected_gene': 'FBXL8', 'score': 15.44}, {'connected_gene': 'E2F4', 'score': 15.01}, {'connected_gene': 'CTCF', 'score': 14.44}, {'connected_gene': 'ENSG00000260465', 'score': 13.6}, {'connected_gene': 'ENSG00000270165', 'score': 13.06}, {'connected_gene': 'HSD11B2', 'score': 11.49}, {'connected_gene': 'RANBP10', 'score': 11.26}, {'connected_gene': 'PLEKHG4', 'score': 10.89}, {'connected_gene': 'EDC4', 'score': 10.46}, {'connected_gene': 'ENSG00000263276', 'score': 10.38}, {'connected_gene': 'ENSG00000262514', 'score': 10.07}, {'connected_gene': 'TMEM208', 'score': 9.83}, {'connected_gene': 'LRRC29', 'score': 9.83}, {'connected_gene': 'ATP6V0D1', 'score': 7.78}, {'connected_gene': 'DPEP2', 'score': 7.35}, {'connected_gene': 'SLC7A6', 'score': 7.09}, {'connected_gene': 'PRMT7', 'score': 5.27}, {'connected_gene': 'TPPP3', 'score': 0.39}, {'connected_gene': 'ZDHHC1', 'score': 0.39}]
chr16	GH16I067413	67413092	67417067	2.31	[{'connected_gene': 'ZDHHC1', 'score': 550.77}, {'connected_gene': 'PRMT7', 'score': 19.39}, {'connected_gene': 'ATP6V0D1', 'score': 17.89}, {'connected_gene': 'LRRC36', 'score': 17.05}, {'connected_gene': 'FHOD1', 'score': 11.25}, {'connected_gene': 'PLEKHG4', 'score': 10.82}, {'connected_gene': 'TMEM208', 'score': 9.72}, {'connected_gene': 'LRRC29', 'score': 9.72}, {'connected_gene': 'HSD11B2', 'score': 8.71}, {'connected_gene': 'DPEP2', 'score': 7.35}, {'connected_gene': 'TPPP3', 'score': 0.34}]
chr16	GH16I067294	67294998	67295147	0.31	[{'connected_gene': 'ZDHHC1', 'score': 10.55}, {'connected_gene': 'HSD11B2', 'score': 10.5}, {'connected_gene': 'TMEM208', 'score': 10.39}, {'connected_gene': 'LRRC29', 'score': 10.39}, {'connected_gene': 'RNU1-123P', 'score': 10.34}, {'connected_gene': 'TPPP3', 'score': 10.34}, {'connected_gene': 'PIR58758', 'score': 0.77}, {'connected_gene': 'PIR55673', 'score': 0.44}, {'connected_gene': 'GC16M067290', 'score': 0.44}, {'connected_gene': 'KCTD19', 'score': 0.29}]
chr16	GH16I067295	67295198	67295347	0.31	[{'connected_gene': 'ZDHHC1', 'score': 10.55}, {'connected_gene': 'HSD11B2', 'score': 10.5}, {'connected_gene': 'TMEM208', 'score': 10.39}, {'connected_gene': 'LRRC29', 'score': 10.39}, {'connected_gene': 'RNU1-123P', 'score': 10.34}, {'connected_gene': 'TPPP3', 'score': 10.34}, {'connected_gene': 'PIR58758', 'score': 0.77}, {'connected_gene': 'PIR55673', 'score': 0.44}, {'connected_gene': 'GC16M067290', 'score': 0.44}, {'connected_gene': 'KCTD19', 'score': 0.29}]
chr16	GH16I067255	67255048	67260185	0.57	[{'connected_gene': 'TMEM208', 'score': 11.36}, {'connected_gene': 'LRRC29', 'score': 11.36}, {'connected_gene': 'EXOC3L1', 'score': 11.09}, {'connected_gene': 'E2F4', 'score': 11.09}, {'connected_gene': 'KIAA0895L', 'score': 11.08}, {'connected_gene': 'HSD11B2', 'score': 10.62}, {'connected_gene': 'ZDHHC1', 'score': 10.3}, {'connected_gene': 'LRRC36', 'score': 10.22}, {'connected_gene': 'ELMO3', 'score': 8.63}, {'connected_gene': 'ENSG00000260465', 'score': 5.65}, {'connected_gene': 'ATP6V0D1', 'score': 4.98}, {'connected_gene': 'FHOD1', 'score': 4.71}, {'connected_gene': 'ENSG00000262691', 'score': 0.77}, {'connected_gene': 'SLC9A5', 'score': 0.37}]
chr16	GH16I067225	67225678	67225827	0.43	[{'connected_gene': 'TMEM208', 'score': 550.77}, {'connected_gene': 'LOC105369155', 'score': 550.77}, {'connected_gene': 'LRRC29', 'score': 550.77}, {'connected_gene': 'ELMO3', 'score': 12.35}, {'connected_gene': 'GC16M067211', 'score': 0.39}]
chr16	GH16I067228	67228638	67228787	0.38	[{'connected_gene': 'TMEM208', 'score': 550.77}, {'connected_gene': 'LOC105369155', 'score': 550.77}, {'connected_gene': 'LRRC29', 'score': 550.77}, {'connected_gene': 'SLC9A5', 'score': 0.44}]
chr16	GH16I067226	67226139	67228359	2.09	[{'connected_gene': 'TMEM208', 'score': 550.77}, {'connected_gene': 'LOC105369155', 'score': 550.77}, {'connected_gene': 'LRRC29', 'score': 550.77}, {'connected_gene': 'EDC4', 'score': 16.4}, {'connected_gene': 'CENPT', 'score': 11.84}, {'connected_gene': 'NFATC3', 'score': 10.57}, {'connected_gene': 'KIAA0895L', 'score': 10.41}, {'connected_gene': 'DPEP2', 'score': 7.83}, {'connected_gene': 'LRRC36', 'score': 5.47}, {'connected_gene': 'SLC9A5', 'score': 0.39}]
chr16	GH16I067442	67442850	67444607	0.77	[{'connected_gene': 'GC16M067444', 'score': 550.77}, {'connected_gene': 'ATP6V0D1', 'score': 19.81}, {'connected_gene': 'ZDHHC1', 'score': 11.46}, {'connected_gene': 'TMEM208', 'score': 9.46}, {'connected_gene': 'LRRC29', 'score': 9.46}, {'connected_gene': 'LRRC36', 'score': 9.14}, {'connected_gene': 'PRMT7', 'score': 5.64}, {'connected_gene': 'ENSG00000261320', 'score': 0.39}]
chr16	GH16I067444	67444650	67453164	1.07	[{'connected_gene': 'GC16M067447', 'score': 550.77}, {'connected_gene': 'ATP6V0D1', 'score': 32.08}, {'connected_gene': 'ZDHHC1', 'score': 11.67}, {'connected_gene': 'AGRP', 'score': 11.24}, {'connected_gene': 'RIPOR1', 'score': 10.41}, {'connected_gene': 'E2F4', 'score': 10.34}, {'connected_gene': 'EXOC3L1', 'score': 10.34}, {'connected_gene': 'KIAA0895L', 'score': 10.34}, {'connected_gene': 'TMEM208', 'score': 9.9}, {'connected_gene': 'LRRC29', 'score': 9.9}, {'connected_gene': 'PARD6A', 'score': 9.83}, {'connected_gene': 'ACD', 'score': 9.83}, {'connected_gene': 'LRRC36', 'score': 9.65}, {'connected_gene': 'ENSG00000237718', 'score': 9.58}, {'connected_gene': 'CARMIL2', 'score': 9.56}, {'connected_gene': 'RANBP10', 'score': 9.23}, {'connected_gene': 'PLA2G15', 'score': 5.67}, {'connected_gene': 'PRMT7', 'score': 5.42}, {'connected_gene': 'GC16M067470', 'score': 0.34}]
chr16	GH16I067296	67296055	67296783	0.46	[{'connected_gene': 'PIR58758', 'score': 550.77}, {'connected_gene': 'ZDHHC1', 'score': 10.55}, {'connected_gene': 'HSD11B2', 'score': 10.49}, {'connected_gene': 'TMEM208', 'score': 10.39}, {'connected_gene': 'LRRC29', 'score': 10.39}, {'connected_gene': 'RNU1-123P', 'score': 10.35}, {'connected_gene': 'TPPP3', 'score': 10.34}, {'connected_gene': 'PIR55673', 'score': 0.44}, {'connected_gene': 'GC16M067290', 'score': 0.44}, {'connected_gene': 'KCTD19', 'score': 0.29}]
chr16	GH16I067260	67260468	67261233	0.95	[{'connected_gene': 'ENSG00000262691', 'score': 550.77}, {'connected_gene': 'TMEM208', 'score': 11.01}, {'connected_gene': 'LRRC29', 'score': 11.01}, {'connected_gene': 'HSD11B2', 'score': 10.62}, {'connected_gene': 'ZDHHC1', 'score': 10.26}, {'connected_gene': 'FHOD1', 'score': 0.39}, {'connected_gene': 'SLC9A5', 'score': 0.34}]