PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000220478	[[51973549, 51974034], [51974713, 51974766], [51975275, 51975321], [51975415, 51975631], [51980456, 51980599], [51981415, 51981565], [51984355, 51984533], [51988071, 51988188], [51991515, 51991599], [51993303, 51993441], [52005529, 52005610], [52011604, 52013223]]	[[51973952, 51974034], [51974713, 51974766], [51975275, 51975321], [51975415, 51975631], [51980456, 51980599], [51981415, 51981565], [51984355, 51984533], [51988071, 51988188], [51991515, 51991599], [51993303, 51993441], [52005529, 52005610], [52011604, 52011723]]
ENST00000542355	[[51973688, 51974034], [51975275, 51975321], [51975415, 51975631], [51980456, 51980599], [51981415, 51981565], [51984355, 51984533], [51988071, 51988188], [51991515, 51991599], [51993303, 51993441], [52005529, 52005610], [52011604, 52012268]]	[[51984361, 51984533], [51988071, 51988188], [51991515, 51991599], [51993303, 51993441], [52005529, 52005610], [52011604, 52011723]]
ENST00000558709	[[51973728, 51974034], [51975275, 51975321], [51975415, 51975631], [51981415, 51981565], [51984355, 51984533]]	[[51984361, 51984533]]
NM_001165257	[[51973549, 51974034], [51975275, 51975321], [51975415, 51975631], [51980456, 51980599], [51981415, 51981565], [51984355, 51984533], [51988071, 51988188], [51991515, 51991599], [51993303, 51993441], [52005529, 52005610], [52011604, 52013223]]	[[51984361, 51984533], [51988071, 51988188], [51991515, 51991599], [51993303, 51993441], [52005529, 52005610], [52011604, 52011723]]
NM_013243	[[51973549, 51974034], [51974713, 51974766], [51975275, 51975321], [51975415, 51975631], [51980456, 51980599], [51981415, 51981565], [51984355, 51984533], [51988071, 51988188], [51991515, 51991599], [51993303, 51993441], [52005529, 52005610], [52011604, 52013223]]	[[51973952, 51974034], [51974713, 51974766], [51975275, 51975321], [51975415, 51975631], [51980456, 51980599], [51981415, 51981565], [51984355, 51984533], [51988071, 51988188], [51991515, 51991599], [51993303, 51993441], [52005529, 52005610], [52011604, 52011723]]

Promoter

Chrom	Start	End	Description
chr15	51973635	51973646	CAGE_peak_4_at_SCG3_5end
chr15	51973680	51973707	CAGE_peak_1_at_SCG3_5end
chr15	51973708	51973725	CAGE_peak_3_at_SCG3_5end
chr15	51973877	51973934	CAGE_peak_2_at_SCG3_5end
chr15	51973935	51973946	CAGE_peak_5_at_SCG3_5end
chr15	51984388	51984400	CAGE_peak_6_at_SCG3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I051634	51634609	51634948	0.9	[{'connected_gene': 'TRPM7', 'score': 14.98}, {'connected_gene': 'ENSG00000260618', 'score': 12.57}, {'connected_gene': 'DCAF13P3', 'score': 11.67}, {'connected_gene': 'SCG3', 'score': 11.55}, {'connected_gene': 'ENSG00000259712', 'score': 11.17}, {'connected_gene': 'AP4E1', 'score': 10.65}, {'connected_gene': 'MYO5C', 'score': 10.0}, {'connected_gene': 'DMXL2', 'score': 8.79}, {'connected_gene': 'MAPK6', 'score': 3.35}, {'connected_gene': 'LOC105370816', 'score': 0.34}]
chr15	GH15I051706	51706115	51706593	0.63	[{'connected_gene': 'SCG3', 'score': 12.05}, {'connected_gene': 'LYSMD2', 'score': 11.37}, {'connected_gene': 'TMOD2', 'score': 11.37}, {'connected_gene': 'MAPK6', 'score': 4.96}, {'connected_gene': 'ENSG00000259296', 'score': 0.44}, {'connected_gene': 'ENSG00000259241', 'score': 0.39}]
chr15	GH15I051641	51641223	51642807	0.46	[{'connected_gene': 'SCG3', 'score': 24.12}, {'connected_gene': 'DMXL2', 'score': 20.33}, {'connected_gene': 'ENSG00000260618', 'score': 15.27}, {'connected_gene': 'TRPM7', 'score': 13.92}, {'connected_gene': 'AP4E1', 'score': 12.42}, {'connected_gene': 'LYSMD2', 'score': 11.59}, {'connected_gene': 'TMOD2', 'score': 11.59}, {'connected_gene': 'ENSG00000259712', 'score': 11.38}, {'connected_gene': 'LOC105370816', 'score': 0.39}]
chr15	GH15I051629	51629001	51630259	0.97	[{'connected_gene': 'SCG3', 'score': 24.06}, {'connected_gene': 'DMXL2', 'score': 4.63}, {'connected_gene': 'LOC105370816', 'score': 0.31}]
chr15	GH15I051681	51681184	51682003	1.7	[{'connected_gene': 'SCG3', 'score': 562.97}, {'connected_gene': 'ENSG00000259241', 'score': 0.39}]
chr15	GH15I051758	51758284	51760289	1.06	[{'connected_gene': 'LYSMD2', 'score': 22.89}, {'connected_gene': 'ENSG00000259712', 'score': 20.68}, {'connected_gene': 'ENSG00000260618', 'score': 16.1}, {'connected_gene': 'FAM214A', 'score': 11.9}, {'connected_gene': 'ENSG00000259935', 'score': 11.25}, {'connected_gene': 'SCG3', 'score': 11.01}, {'connected_gene': 'AP4E1', 'score': 10.46}, {'connected_gene': 'DMXL2', 'score': 4.18}, {'connected_gene': 'ENSG00000259377', 'score': 0.44}, {'connected_gene': 'TMOD2', 'score': 0.44}, {'connected_gene': 'GC15P051815', 'score': 0.22}]
chr15	GH15I051771	51771641	51774182	0.2	[{'connected_gene': 'LYSMD2', 'score': 48.21}, {'connected_gene': 'TMOD2', 'score': 19.31}, {'connected_gene': 'SCG3', 'score': 11.36}, {'connected_gene': 'TMOD3', 'score': 10.29}, {'connected_gene': 'DMXL2', 'score': 6.61}, {'connected_gene': 'ENSG00000259377', 'score': 0.34}, {'connected_gene': 'GC15P051815', 'score': 0.26}]
chr15	GH15I051646	51646824	51647713	1.37	[{'connected_gene': 'LYSMD2', 'score': 11.34}, {'connected_gene': 'TMOD2', 'score': 11.34}, {'connected_gene': 'SCG3', 'score': 10.91}, {'connected_gene': 'TMOD3', 'score': 5.89}, {'connected_gene': 'LOC105370816', 'score': 0.44}, {'connected_gene': 'DMXL2', 'score': 0.34}]
chr15	GH15I051725	51725783	51728473	1.1	[{'connected_gene': 'LYSMD2', 'score': 12.56}, {'connected_gene': 'TMOD2', 'score': 12.56}, {'connected_gene': 'SCG3', 'score': 11.44}, {'connected_gene': 'TMOD3', 'score': 8.15}, {'connected_gene': 'ENSG00000259296', 'score': 0.39}]
chr15	GH15I051650	51650024	51650193	0.73	[{'connected_gene': 'LYSMD2', 'score': 11.34}, {'connected_gene': 'TMOD2', 'score': 11.34}, {'connected_gene': 'SCG3', 'score': 10.91}, {'connected_gene': 'LOC105370816', 'score': 0.44}, {'connected_gene': 'DMXL2', 'score': 0.31}]
chr15	GH15I051643	51643424	51643573	0.59	[{'connected_gene': 'LYSMD2', 'score': 11.34}, {'connected_gene': 'TMOD2', 'score': 11.34}, {'connected_gene': 'SCG3', 'score': 10.9}, {'connected_gene': 'LOC105370816', 'score': 0.39}, {'connected_gene': 'DMXL2', 'score': 0.34}]
chr15	GH15I051776	51776284	51776433	0.94	[{'connected_gene': 'LYSMD2', 'score': 12.1}, {'connected_gene': 'TMOD2', 'score': 12.1}, {'connected_gene': 'SCG3', 'score': 11.35}, {'connected_gene': 'ENSG00000259377', 'score': 0.34}, {'connected_gene': 'GC15P051815', 'score': 0.28}]
chr15	GH15I051722	51722130	51722277	0.2	[{'connected_gene': 'LYSMD2', 'score': 11.81}, {'connected_gene': 'TMOD2', 'score': 11.81}, {'connected_gene': 'SCG3', 'score': 11.25}, {'connected_gene': 'ENSG00000259296', 'score': 0.44}]
chr15	GH15I051672	51672268	51672493	0.89	[{'connected_gene': 'LYSMD2', 'score': 10.97}, {'connected_gene': 'TMOD2', 'score': 10.97}, {'connected_gene': 'DMXL2', 'score': 7.54}, {'connected_gene': 'MAPK6', 'score': 4.68}, {'connected_gene': 'SCG3', 'score': 0.44}, {'connected_gene': 'LOC105370816', 'score': 0.37}]
chr15	GH15I051769	51769560	51771107	0.31	[{'connected_gene': 'LYSMD2', 'score': 36.47}, {'connected_gene': 'TMOD3', 'score': 18.1}, {'connected_gene': 'SCG3', 'score': 11.26}, {'connected_gene': 'ENSG00000259377', 'score': 0.37}, {'connected_gene': 'TMOD2', 'score': 0.37}, {'connected_gene': 'GC15P051815', 'score': 0.26}]
chr15	GH15I051718	51718034	51721528	0.89	[{'connected_gene': 'LYSMD2', 'score': 45.16}, {'connected_gene': 'SCG3', 'score': 12.11}, {'connected_gene': 'TMOD2', 'score': 11.79}, {'connected_gene': 'TMOD3', 'score': 7.33}, {'connected_gene': 'DMXL2', 'score': 5.38}, {'connected_gene': 'ENSG00000259296', 'score': 0.77}]
chr15	GH15I051764	51764100	51767422	0.31	[{'connected_gene': 'LYSMD2', 'score': 36.5}, {'connected_gene': 'SCG3', 'score': 11.0}, {'connected_gene': 'TMOD3', 'score': 8.02}, {'connected_gene': 'ENSG00000259377', 'score': 0.39}, {'connected_gene': 'TMOD2', 'score': 0.39}, {'connected_gene': 'GC15P051815', 'score': 0.25}]
chr15	GH15I051767	51767801	51768000	0.2	[{'connected_gene': 'LYSMD2', 'score': 24.74}, {'connected_gene': 'SCG3', 'score': 11.26}, {'connected_gene': 'TMOD3', 'score': 10.28}, {'connected_gene': 'ENSG00000259377', 'score': 0.37}, {'connected_gene': 'TMOD2', 'score': 0.37}, {'connected_gene': 'GC15P051815', 'score': 0.25}]
chr15	GH15I051728	51728916	51738836	2.72	[{'connected_gene': 'LYSMD2', 'score': 587.47}, {'connected_gene': 'DMXL2', 'score': 20.12}, {'connected_gene': 'SCG3', 'score': 11.21}, {'connected_gene': 'TMOD3', 'score': 8.19}, {'connected_gene': 'MAPK6', 'score': 7.03}, {'connected_gene': 'TMOD2', 'score': 6.45}, {'connected_gene': 'ENSG00000259296', 'score': 0.37}]
chr15	GH15I051558	51558364	51558727	0.59	[{'connected_gene': 'DMXL2', 'score': 20.35}, {'connected_gene': 'MAPK6', 'score': 12.49}, {'connected_gene': 'SCG3', 'score': 5.71}, {'connected_gene': 'TMOD3', 'score': 1.54}, {'connected_gene': 'GC15M057426', 'score': 0.77}, {'connected_gene': 'ENSG00000259668', 'score': 0.15}]
chr15	GH15I051620	51620238	51624665	2.57	[{'connected_gene': 'DMXL2', 'score': 601.11}, {'connected_gene': 'SCG3', 'score': 22.54}, {'connected_gene': 'LYSMD2', 'score': 12.4}, {'connected_gene': 'TRPM7', 'score': 10.88}, {'connected_gene': 'ENSG00000260618', 'score': 10.87}, {'connected_gene': 'MAPK6', 'score': 10.19}, {'connected_gene': 'AP4E1', 'score': 10.15}, {'connected_gene': 'TMOD2', 'score': 10.09}, {'connected_gene': 'TMOD3', 'score': 4.85}, {'connected_gene': 'ENSG00000259678', 'score': 4.58}, {'connected_gene': 'LOC105370816', 'score': 0.29}, {'connected_gene': 'GC15M057426', 'score': 0.22}]
chr15	GH15I051707	51707024	51709381	0.94	[{'connected_gene': 'DMXL2', 'score': 20.3}, {'connected_gene': 'SCG3', 'score': 18.94}, {'connected_gene': 'LYSMD2', 'score': 10.65}, {'connected_gene': 'TMOD2', 'score': 10.65}, {'connected_gene': 'MAPK6', 'score': 6.55}, {'connected_gene': 'TMOD3', 'score': 4.89}, {'connected_gene': 'ENSG00000259296', 'score': 0.44}, {'connected_gene': 'ENSG00000259241', 'score': 0.39}]
chr15	GH15I051493	51493478	51494693	0.78	[{'connected_gene': 'DMXL2', 'score': 23.44}, {'connected_gene': 'SCG3', 'score': 6.46}, {'connected_gene': 'ENSG00000259668', 'score': 0.28}, {'connected_gene': 'GC15M057426', 'score': 0.2}, {'connected_gene': 'ENSG00000259678', 'score': 0.18}]
chr15	GH15I052143	52143424	52145192	0.71	[{'connected_gene': 'GNB5', 'score': 19.43}, {'connected_gene': 'MAPK6', 'score': 10.71}, {'connected_gene': 'MIR1266', 'score': 9.7}, {'connected_gene': 'CERNA1', 'score': 8.61}, {'connected_gene': 'SCG3', 'score': 5.32}, {'connected_gene': 'GC15P052163', 'score': 0.37}, {'connected_gene': 'ENSG00000259709', 'score': 0.37}, {'connected_gene': 'GC15P052002', 'score': 0.11}]