PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000507005	[[146348781, 146348928], [146350330, 146351353], [146480483, 146480828]]	None
ENST00000361719	[[146348781, 146348928], [146350330, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146755007, 146758731]]	[[146350653, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146755007, 146755932]]
ENST00000392299	[[146348781, 146348928], [146350330, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146747694, 146747779], [146755007, 146758731]]	[[146350653, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146747694, 146747755]]
ENST00000502405	[[146348838, 146348928], [146350333, 146351353], [146480483, 146481027]]	None
ENST00000492807	[[146348917, 146348964], [146350333, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146747694, 146747779], [146755007, 146758731]]	[[146350653, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146747694, 146747755]]
ENST00000355289	[[146350418, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146755042, 146756021]]	[[146350653, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146755042, 146755109]]
ENST00000282753	[[146350418, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146755007, 146758734]]	[[146350653, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146755007, 146755932]]
ENST00000507907	[[146350621, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146747694, 146747779], [146755042, 146756021]]	[[146350653, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146747694, 146747755]]
NM_001278065	[[146348917, 146348964], [146350333, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146747694, 146747779], [146755007, 146758734]]	[[146350653, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146747694, 146747755]]
NM_001278067	[[146350333, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146755042, 146758734]]	[[146350653, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146755042, 146755109]]
NM_001278064	[[146350333, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146755007, 146758734]]	[[146350653, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146755007, 146755932]]
NM_001278066	[[146350333, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146747694, 146747779], [146755042, 146758734]]	[[146350653, 146351353], [146480483, 146480733], [146625746, 146625982], [146673385, 146673632], [146678661, 146678830], [146708025, 146708152], [146719904, 146720835], [146747694, 146747755]]

Promoter

Chrom	Start	End	Description
chr6	146348798	146348809	CAGE_peak_2_at_GRM1_5end
chr6	146348810	146348850	CAGE_peak_1_at_GRM1_5end
chr6	146350194	146350223	CAGE_peak_4_at_GRM1_5end
chr6	146350267	146350276	CAGE_peak_10_at_GRM1_5end
chr6	146350744	146350749	CAGE_peak_8_at_GRM1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I146289	146289846	146291114	1.25	[{'connected_gene': 'FBXO30', 'score': 8.95}, {'connected_gene': 'ENSG00000270638', 'score': 4.86}, {'connected_gene': 'RAB32', 'score': 1.95}, {'connected_gene': 'RNA5SP222', 'score': 0.25}, {'connected_gene': 'GC06P146172', 'score': 0.13}, {'connected_gene': 'GRM1', 'score': 0.05}]
chr6	GH06I146080	146080744	146081073	0.33	[{'connected_gene': 'FUNDC2P3', 'score': 0.16}, {'connected_gene': 'GRM1', 'score': 0.13}]
chr6	GH06I146028	146028325	146028454	0.88	[{'connected_gene': 'GRM1', 'score': 0.21}, {'connected_gene': 'FUNDC2P3', 'score': 0.11}]
chr6	GH06I146029	146029152	146029211	0.61	[{'connected_gene': 'GRM1', 'score': 550.21}, {'connected_gene': 'FUNDC2P3', 'score': 0.11}]
chr6	GH06I146027	146027658	146027717	0.76	[{'connected_gene': 'GRM1', 'score': 550.21}, {'connected_gene': 'FUNDC2P3', 'score': 0.11}]
chr6	GH06I146103	146103585	146103734	0.2	[{'connected_gene': 'GRM1', 'score': 10.31}, {'connected_gene': 'FUNDC2P3', 'score': 0.2}]
chr6	GH06I145962	145962656	145965747	2.04	[{'connected_gene': 'SHPRH', 'score': 550.77}, {'connected_gene': 'GRM1', 'score': 550.77}, {'connected_gene': 'LOC100507557', 'score': 15.38}, {'connected_gene': 'GC06M145895', 'score': 0.2}]
chr6	GH06I146434	146434201	146435000	0.43	[{'connected_gene': 'RAB32', 'score': 10.55}, {'connected_gene': 'ENSG00000216811', 'score': 0.2}, {'connected_gene': 'PIR37857', 'score': 0.14}, {'connected_gene': 'GRM1', 'score': 0.04}]
chr6	GH06I146337	146337525	146337674	0.2	[{'connected_gene': 'RAB32', 'score': 10.21}, {'connected_gene': 'RNA5SP222', 'score': 0.77}, {'connected_gene': 'GC06P146172', 'score': 0.1}, {'connected_gene': 'GRM1', 'score': 0.05}]
chr6	GH06I146336	146336465	146336554	0.2	[{'connected_gene': 'RAB32', 'score': 10.21}, {'connected_gene': 'RNA5SP222', 'score': 0.77}, {'connected_gene': 'GC06P146172', 'score': 0.1}, {'connected_gene': 'GRM1', 'score': 0.05}]
chr6	GH06I146356	146356311	146356741	0.2	[{'connected_gene': 'LOC101928661', 'score': 9.48}, {'connected_gene': 'ADGB', 'score': 9.48}, {'connected_gene': 'GC06P146359', 'score': 0.77}, {'connected_gene': 'RNA5SP222', 'score': 0.37}, {'connected_gene': 'GRM1', 'score': 0.05}]
chr6	GH06I146312	146312765	146312914	0.38	[{'connected_gene': 'RNA5SP222', 'score': 0.31}, {'connected_gene': 'GC06P146172', 'score': 0.11}, {'connected_gene': 'GRM1', 'score': 0.05}]
chr6	GH06I146339	146339673	146340184	0.6	[{'connected_gene': 'RNA5SP222', 'score': 550.77}, {'connected_gene': 'RAB32', 'score': 10.21}, {'connected_gene': 'GC06P146172', 'score': 0.1}, {'connected_gene': 'GRM1', 'score': 0.05}]
chr6	GH06I146357	146357105	146359777	0.95	[{'connected_gene': 'GC06P146359', 'score': 550.77}, {'connected_gene': 'LOC105378042', 'score': 5.49}, {'connected_gene': 'GRM1', 'score': 4.86}, {'connected_gene': 'RNA5SP222', 'score': 0.37}]