PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000395052	[[51741085, 51741183], [51742863, 51743449], [51746488, 51747326], [51749077, 51750153], [51751652, 51751833], [51752054, 51752426]]	[[51742999, 51743449], [51746488, 51747326], [51749077, 51750153], [51751652, 51751833], [51752054, 51752128]]
ENST00000296479	[[51741103, 51741183], [51742863, 51743449], [51746488, 51747326], [51747979, 51748137], [51749077, 51750153], [51751652, 51751833], [51752054, 51752128]]	[[51742999, 51743449], [51746488, 51747326], [51747979, 51747999]]
ENST00000475478	[[51741105, 51741183], [51749077, 51750153], [51751652, 51751833], [51752054, 51752629]]	None
ENST00000464585	[[51741320, 51743449], [51746488, 51750153], [51751652, 51751833], [51752054, 51752629]]	None
ENST00000419928	[[51741426, 51741670], [51742863, 51743209]]	[[51742999, 51743209]]
ENST00000442933	[[51742860, 51743449], [51746488, 51747326], [51749077, 51749199], [51750033, 51750153], [51751652, 51751833], [51752054, 51752268]]	[[51742999, 51743449], [51746488, 51747326], [51749077, 51749199], [51750033, 51750153], [51751652, 51751833], [51752054, 51752128]]
ENST00000477330	[[51745287, 51745735], [51746488, 51746597]]	None
ENST00000496661	[[51745287, 51745735], [51746488, 51747326], [51747979, 51748084]]	None
NM_001130063	[[51741080, 51741183], [51749077, 51750153], [51751652, 51751833], [51752054, 51752629]]	[[51749643, 51750153], [51751652, 51751833], [51752054, 51752128]]
NM_000839	[[51741080, 51741183], [51742863, 51743449], [51746488, 51747326], [51749077, 51750153], [51751652, 51751833], [51752054, 51752629]]	[[51742999, 51743449], [51746488, 51747326], [51749077, 51750153], [51751652, 51751833], [51752054, 51752128]]

Promoter

Chrom	Start	End	Description
chr3	51741072	51741106	CAGE_peak_1_at_GRM2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I051383	51383446	51392956	2.28	[{'connected_gene': 'MANF', 'score': 550.77}, {'connected_gene': 'RBM15B', 'score': 550.77}, {'connected_gene': 'PIR60056', 'score': 550.77}, {'connected_gene': 'DCAF1', 'score': 39.36}, {'connected_gene': 'RRP9', 'score': 17.48}, {'connected_gene': 'RAD54L2', 'score': 13.43}, {'connected_gene': 'TEX264', 'score': 9.71}, {'connected_gene': 'GRM2', 'score': 5.92}, {'connected_gene': 'CACNA2D2', 'score': 5.51}, {'connected_gene': 'GPR62', 'score': 4.66}, {'connected_gene': 'PCBP4', 'score': 4.5}, {'connected_gene': 'PIR52841', 'score': 0.77}, {'connected_gene': 'GC03P051392', 'score': 0.77}, {'connected_gene': 'PIR58843', 'score': 0.77}, {'connected_gene': 'PIR33911', 'score': 0.77}, {'connected_gene': 'DOCK3', 'score': 0.03}]
chr3	GH03I051668	51668805	51672915	2.02	[{'connected_gene': 'TEX264', 'score': 570.41}, {'connected_gene': 'DCAF1', 'score': 25.81}, {'connected_gene': 'RRP9', 'score': 11.15}, {'connected_gene': 'RNU6ATAC29P', 'score': 11.06}, {'connected_gene': 'RBM15B', 'score': 10.07}, {'connected_gene': 'RAD54L2', 'score': 10.01}, {'connected_gene': 'DOCK3', 'score': 5.68}, {'connected_gene': 'GRM2', 'score': 5.04}, {'connected_gene': 'PIR41340', 'score': 0.77}, {'connected_gene': 'RNA5SP132', 'score': 0.34}]
chr3	GH03I051621	51621201	51622617	0.98	[{'connected_gene': 'TEX264', 'score': 13.77}, {'connected_gene': 'GRM2', 'score': 5.74}, {'connected_gene': 'GC03P051614', 'score': 0.44}, {'connected_gene': 'GC03P051629', 'score': 0.44}, {'connected_gene': 'RAD54L2', 'score': 0.18}]
chr3	GH03I051355	51355777	51357707	0.52	[{'connected_gene': 'GRM2', 'score': 4.69}, {'connected_gene': 'MANF', 'score': 0.31}, {'connected_gene': 'PIR61668', 'score': 0.31}, {'connected_gene': 'DOCK3', 'score': 0.03}]
chr3	GH03I051706	51706845	51706974	0.83	[{'connected_gene': 'GRM2', 'score': 554.94}, {'connected_gene': 'RNA5SP132', 'score': 0.39}]
chr3	GH03I051707	51707000	51707201	1.6	[{'connected_gene': 'GRM2', 'score': 550.77}, {'connected_gene': 'PIR59646', 'score': 0.44}]
chr3	GH03I051398	51398335	51399990	0.49	[{'connected_gene': 'RAD54L2', 'score': 16.52}, {'connected_gene': 'GRM2', 'score': 4.68}, {'connected_gene': 'PIR51350', 'score': 0.77}, {'connected_gene': 'PIR34561', 'score': 0.34}, {'connected_gene': 'DCAF1', 'score': 0.14}]
chr3	GH03I050737	50737710	50738195	0.2	[{'connected_gene': 'DOCK3', 'score': 10.09}, {'connected_gene': 'LINC02019', 'score': 8.43}, {'connected_gene': 'GRM2', 'score': 4.46}, {'connected_gene': 'ENSG00000213587', 'score': 0.37}, {'connected_gene': 'ZNF652P1', 'score': 0.23}]
chr3	GH03I051498	51498462	51502314	2.26	[{'connected_gene': 'GC03M051486', 'score': 550.77}, {'connected_gene': 'DCAF1', 'score': 550.44}, {'connected_gene': 'RNU6ATAC29P', 'score': 11.79}, {'connected_gene': 'RRP9', 'score': 11.13}, {'connected_gene': 'HEMK1', 'score': 9.68}, {'connected_gene': 'DOCK3', 'score': 8.61}, {'connected_gene': 'GRM2', 'score': 4.73}]
chr3	GH03I051394	51394928	51396997	0.52	[{'connected_gene': 'PIR51350', 'score': 550.77}, {'connected_gene': 'TEX264', 'score': 18.66}, {'connected_gene': 'RAD54L2', 'score': 14.41}, {'connected_gene': 'GRM2', 'score': 5.63}, {'connected_gene': 'RBM15B', 'score': 0.77}, {'connected_gene': 'GC03P051392', 'score': 0.77}, {'connected_gene': 'PIR52841', 'score': 0.77}, {'connected_gene': 'DCAF1', 'score': 0.14}]