PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000221797	[[40093163, 40093223], [40095241, 40095318], [40095817, 40096028], [40097862, 40098116]]	[[40093208, 40093223], [40095241, 40095318], [40095817, 40096028], [40097862, 40097979]]
ENST00000600141	[[40093176, 40093223], [40095830, 40096028], [40097862, 40097899]]	[[40093208, 40093223], [40095830, 40096028], [40097862, 40097899]]
ENST00000600546	[[40095731, 40096028], [40097862, 40098113]]	None
NM_013268	[[40093168, 40093223], [40095241, 40095318], [40095817, 40096028], [40097862, 40098114]]	[[40093208, 40093223], [40095241, 40095318], [40095817, 40096028], [40097862, 40097979]]

Promoter

Chrom	Start	End	Description
chr19	40093154	40093171	CAGE_peak_1_at_LGALS13_5end
chr19	40093173	40093182	CAGE_peak_2_at_LGALS13_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I039607	39607401	39607650	0.43	[{'connected_gene': 'HNRNPL', 'score': 17.58}, {'connected_gene': 'AKT2', 'score': 15.04}, {'connected_gene': 'ZNF780A', 'score': 10.77}, {'connected_gene': 'RN7SL566P', 'score': 10.73}, {'connected_gene': 'PSMC4', 'score': 10.65}, {'connected_gene': 'FBL', 'score': 10.48}, {'connected_gene': 'ENSG00000269688', 'score': 10.16}, {'connected_gene': 'LGALS13', 'score': 0.44}, {'connected_gene': 'ENSG00000269519', 'score': 0.34}]
chr19	GH19I039605	39602841	39602990	0.43	[{'connected_gene': 'LGALS13', 'score': 550.77}, {'connected_gene': 'ZNF780B', 'score': 15.56}, {'connected_gene': 'SUPT5H', 'score': 12.04}, {'connected_gene': 'ZNF780A', 'score': 10.68}, {'connected_gene': 'ZNF546', 'score': 10.34}, {'connected_gene': 'TTC9B', 'score': 9.65}, {'connected_gene': 'CNTD2', 'score': 9.65}, {'connected_gene': 'ENSG00000269519', 'score': 0.31}]
chr19	GH19I039602	39602475	39602534	0.61	[{'connected_gene': 'LGALS13', 'score': 550.77}, {'connected_gene': 'TTC9B', 'score': 9.65}, {'connected_gene': 'CNTD2', 'score': 9.65}, {'connected_gene': 'ENSG00000269519', 'score': 0.31}]
chr19	GH19I039603	39603281	39603430	0.2	[{'connected_gene': 'LGALS13', 'score': 550.77}, {'connected_gene': 'TTC9B', 'score': 9.65}, {'connected_gene': 'CNTD2', 'score': 9.65}, {'connected_gene': 'ENSG00000269519', 'score': 0.31}]
chr19	GH19I039606	39606701	39606850	0.31	[{'connected_gene': 'LGALS13', 'score': 0.77}, {'connected_gene': 'ENSG00000269519', 'score': 0.34}]
chr19	GH19I039604	39604061	39604210	0.49	[{'connected_gene': 'LGALS13', 'score': 550.77}, {'connected_gene': 'ENSG00000269519', 'score': 0.31}]
chr19	GH19I039608	39608221	39608370	0.2	[{'connected_gene': 'LGALS13', 'score': 0.44}, {'connected_gene': 'ENSG00000269519', 'score': 0.34}]
chr19	GH19I039609	39607141	39607290	0.38	[{'connected_gene': 'LGALS13', 'score': 0.77}, {'connected_gene': 'ENSG00000269519', 'score': 0.34}]
chr19	GH19I039631	39631241	39631390	0.84	[{'connected_gene': 'ENSG00000269519', 'score': 550.77}, {'connected_gene': 'ZNF780B', 'score': 19.32}, {'connected_gene': 'SUPT5H', 'score': 17.67}, {'connected_gene': 'HNRNPL', 'score': 15.3}, {'connected_gene': 'ZNF546', 'score': 13.99}, {'connected_gene': 'EID2B', 'score': 13.68}, {'connected_gene': 'SPTBN4', 'score': 12.83}, {'connected_gene': 'PAF1', 'score': 11.84}, {'connected_gene': 'PLEKHG2', 'score': 10.76}, {'connected_gene': 'FBXO17', 'score': 9.81}, {'connected_gene': 'LGALS13', 'score': 0.31}]