PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000391759	[[54610319, 54610476], [54611332, 54611551], [54611632, 54611702], [54613433, 54613504], [54617821, 54618080], [54618626, 54619055]]	[[54610356, 54610476], [54611332, 54611551], [54611632, 54611702], [54613433, 54613504], [54617821, 54618080], [54618626, 54618649]]
ENST00000391758	[[54610326, 54610476], [54611332, 54611551], [54611632, 54611702], [54613433, 54613504], [54617821, 54618080], [54618419, 54618454]]	[[54610356, 54610476], [54611332, 54611551], [54611632, 54611702], [54613433, 54613504], [54617821, 54618076]]
ENST00000420715	[[54610326, 54610476], [54611332, 54611551], [54611632, 54611702], [54617821, 54618080], [54618626, 54618665]]	[[54611666, 54611702], [54617821, 54618080], [54618626, 54618649]]
ENST00000391757	[[54610326, 54610476], [54611332, 54611514], [54611632, 54611702], [54613433, 54613504], [54617821, 54618080], [54618626, 54618668]]	[[54611355, 54611514], [54611632, 54611702], [54613433, 54613504], [54617821, 54618080], [54618626, 54618649]]
NM_001321792	[[54610319, 54610476], [54611332, 54611551], [54611632, 54611702], [54613433, 54613504], [54617821, 54618080], [54618419, 54618454]]	[[54610356, 54610476], [54611332, 54611551], [54611632, 54611702], [54613433, 54613504], [54617821, 54618076]]
NM_013342	[[54610319, 54610476], [54611332, 54611551], [54611632, 54611702], [54613433, 54613504], [54617821, 54618080], [54618626, 54619055]]	[[54610356, 54610476], [54611332, 54611551], [54611632, 54611702], [54613433, 54613504], [54617821, 54618080], [54618626, 54618649]]

Promoter

Chrom	Start	End	Description
chr19	54618650	54618688	CAGE_peak_3_at_TFPT_5end
chr19	54618690	54618734	CAGE_peak_2_at_TFPT_5end
chr19	54619006	54619046	CAGE_peak_1_at_TFPT_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I053864	53864030	53873798	2.58	[{'connected_gene': 'MYADM', 'score': 565.22}, {'connected_gene': 'LOC105372457', 'score': 550.77}, {'connected_gene': 'ENSG00000269001', 'score': 23.24}, {'connected_gene': 'ZNF845', 'score': 21.85}, {'connected_gene': 'ZNF765', 'score': 19.63}, {'connected_gene': 'ZNF816', 'score': 17.82}, {'connected_gene': 'LENG8', 'score': 16.99}, {'connected_gene': 'ENSG00000235681', 'score': 16.64}, {'connected_gene': 'ZNF813', 'score': 16.37}, {'connected_gene': 'TPM3P6', 'score': 16.28}, {'connected_gene': 'ZNF160', 'score': 15.96}, {'connected_gene': 'LENG8-AS1', 'score': 15.9}, {'connected_gene': 'ZNF525', 'score': 15.07}, {'connected_gene': 'ZNF761', 'score': 14.63}, {'connected_gene': 'CNOT3', 'score': 14.15}, {'connected_gene': 'ZNF665', 'score': 13.75}, {'connected_gene': 'TPM3P9', 'score': 11.39}, {'connected_gene': 'CDC42EP5', 'score': 10.69}, {'connected_gene': 'PRPF31', 'score': 10.35}, {'connected_gene': 'LENG1', 'score': 10.14}, {'connected_gene': 'ZNF888', 'score': 9.99}, {'connected_gene': 'PRKCG', 'score': 8.58}, {'connected_gene': 'NLRP12', 'score': 3.05}, {'connected_gene': 'MBOAT7', 'score': 2.63}, {'connected_gene': 'VSTM1', 'score': 2.52}, {'connected_gene': 'LILRA5', 'score': 2.13}, {'connected_gene': 'OSCAR', 'score': 2.05}, {'connected_gene': 'TFPT', 'score': 1.7}, {'connected_gene': 'LILRA6', 'score': 1.56}, {'connected_gene': 'LILRB2', 'score': 1.53}, {'connected_gene': 'LILRB3', 'score': 1.21}, {'connected_gene': 'ENSG00000232324', 'score': 0.77}]
chr19	GH19I053961	53961989	53962240	1.11	[{'connected_gene': 'CACNG8', 'score': 555.12}, {'connected_gene': 'ZNF347', 'score': 13.4}, {'connected_gene': 'ZNF702P', 'score': 10.89}, {'connected_gene': 'ENSG00000267838', 'score': 10.32}, {'connected_gene': 'ZNF665', 'score': 10.29}, {'connected_gene': 'TFPT', 'score': 3.36}, {'connected_gene': 'NDUFA3', 'score': 1.74}, {'connected_gene': 'CACNG7', 'score': 1.44}, {'connected_gene': 'MYADM', 'score': 1.31}, {'connected_gene': 'PRPF31', 'score': 1.21}, {'connected_gene': 'PIR36356', 'score': 0.26}]
chr19	GH19I054114	54114020	54116401	2.11	[{'connected_gene': 'PRPF31', 'score': 570.73}, {'connected_gene': 'PIR52942', 'score': 550.77}, {'connected_gene': 'GC19P054118', 'score': 550.77}, {'connected_gene': 'TFPT', 'score': 550.77}, {'connected_gene': 'GC19P054117', 'score': 550.77}, {'connected_gene': 'LENG8-AS1', 'score': 24.07}, {'connected_gene': 'ZNF765', 'score': 23.61}, {'connected_gene': 'CNOT3', 'score': 21.29}, {'connected_gene': 'LENG8', 'score': 19.83}, {'connected_gene': 'ZNF845', 'score': 19.57}, {'connected_gene': 'ENSG00000269001', 'score': 16.95}, {'connected_gene': 'ZNF525', 'score': 14.84}, {'connected_gene': 'ENSG00000235681', 'score': 14.8}, {'connected_gene': 'TPM3P6', 'score': 14.47}, {'connected_gene': 'ZNF761', 'score': 12.12}, {'connected_gene': 'ZNF665', 'score': 11.03}, {'connected_gene': 'LENG1', 'score': 10.64}, {'connected_gene': 'OSCAR', 'score': 10.64}, {'connected_gene': 'TPM3P9', 'score': 10.48}, {'connected_gene': 'ENSG00000269873', 'score': 9.89}, {'connected_gene': 'LOC105372457', 'score': 9.83}, {'connected_gene': 'ZNF347', 'score': 9.68}, {'connected_gene': 'NDUFA3', 'score': 5.88}, {'connected_gene': 'PIR52357', 'score': 0.77}]