PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000424843	[[105501458, 105503767], [105507304, 105507437], [105509199, 105510304], [105511544, 105511747], [105521166, 105521302], [105601046, 105601252]]	[[105502900, 105503767], [105507304, 105507437], [105509199, 105510304], [105511544, 105511747], [105521166, 105521302], [105601046, 105601125]]
ENST00000276654	[[105501477, 105503767], [105507304, 105507437], [105509199, 105510304], [105511544, 105511747], [105521166, 105521302], [105544134, 105544191], [105601046, 105601234]]	[[105502900, 105503767], [105507304, 105507437], [105509199, 105510304], [105511544, 105511747], [105521166, 105521302], [105544134, 105544191], [105601046, 105601125]]
ENST00000520770	[[105509981, 105510304], [105511544, 105511747], [105521166, 105521302], [105601046, 105601237]]	None
ENST00000518375	[[105501483, 105503767], [105507304, 105508370]]	None
ENST00000523007	[[105503645, 105503767], [105507304, 105507437], [105509199, 105509833]]	[[105503645, 105503767], [105507304, 105507437], [105509199, 105509546]]
ENST00000522046	[[105503648, 105503767], [105507304, 105507978]]	None
ENST00000519675	[[105516471, 105521302], [105601046, 105601223]]	None
NM_013437	[[105501458, 105503767], [105507304, 105507437], [105509199, 105510304], [105511544, 105511747], [105521166, 105521302], [105544134, 105544191], [105601046, 105601252]]	[[105502900, 105503767], [105507304, 105507437], [105509199, 105510304], [105511544, 105511747], [105521166, 105521302], [105544134, 105544191], [105601046, 105601125]]
NM_001135703	[[105501458, 105503767], [105507304, 105507437], [105509199, 105510304], [105511544, 105511747], [105521166, 105521302], [105601046, 105601252]]	[[105502900, 105503767], [105507304, 105507437], [105509199, 105510304], [105511544, 105511747], [105521166, 105521302], [105601046, 105601125]]

Promoter

Chrom	Start	End	Description
chr8	105601134	105601165	CAGE_peak_3_at_LRP12_5end
chr8	105601469	105601520	CAGE_peak_1_at_LRP12_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I104277	104277805	104279567	0.97	[{'connected_gene': 'RIMS2', 'score': 5.23}, {'connected_gene': 'LRP12', 'score': 1.28}, {'connected_gene': 'PIR34879', 'score': 0.37}, {'connected_gene': 'DCSTAMP', 'score': 0.21}]
chr8	GH08I104746	104746198	104748243	1.17	[{'connected_gene': 'DCSTAMP', 'score': 4.58}, {'connected_gene': 'LRP12', 'score': 1.81}, {'connected_gene': 'GC08P104735', 'score': 0.39}, {'connected_gene': 'GC08M104805', 'score': 0.19}, {'connected_gene': 'ZFPM2', 'score': 0.1}]
chr8	GH08I104669	104669058	104669541	0.96	[{'connected_gene': 'DCSTAMP', 'score': 22.41}, {'connected_gene': 'LRP12', 'score': 13.42}, {'connected_gene': 'ENSG00000283157', 'score': 0.29}, {'connected_gene': 'GC08P104611', 'score': 0.22}, {'connected_gene': 'ZFPM2', 'score': 0.18}]
chr8	GH08I104664	104664453	104666983	1.74	[{'connected_gene': 'DCSTAMP', 'score': 14.86}, {'connected_gene': 'LRP12', 'score': 13.98}, {'connected_gene': 'ENSG00000283157', 'score': 0.28}, {'connected_gene': 'GC08P104611', 'score': 0.23}, {'connected_gene': 'ZFPM2', 'score': 0.19}]
chr8	GH08I104359	104359795	104362798	1.18	[{'connected_gene': 'DCSTAMP', 'score': 60.04}, {'connected_gene': 'LRP12', 'score': 1.54}, {'connected_gene': 'GC08M104420', 'score': 0.22}, {'connected_gene': 'DPYS', 'score': 0.14}]
chr8	GH08I104336	104336616	104337480	0.99	[{'connected_gene': 'DCSTAMP', 'score': 35.71}, {'connected_gene': 'LRP12', 'score': 1.75}, {'connected_gene': 'PIR34879', 'score': 0.18}, {'connected_gene': 'DPYS', 'score': 0.12}]
chr8	GH08I104585	104585660	104586562	1.13	[{'connected_gene': 'DCSTAMP', 'score': 12.5}, {'connected_gene': 'LRP12', 'score': 7.46}, {'connected_gene': 'GC08P104568', 'score': 0.34}]
chr8	GH08I104459	104459668	104461362	0.46	[{'connected_gene': 'MIR548A3', 'score': 10.67}, {'connected_gene': 'LRP12', 'score': 4.73}, {'connected_gene': 'DPYS', 'score': 0.44}, {'connected_gene': 'LOC105375691', 'score': 0.44}, {'connected_gene': 'LOC105375692', 'score': 0.29}]
chr8	GH08I104659	104659593	104659742	0.51	[{'connected_gene': 'LRP12', 'score': 11.6}, {'connected_gene': 'DCSTAMP', 'score': 4.08}, {'connected_gene': 'ENSG00000283157', 'score': 0.26}, {'connected_gene': 'GC08P104611', 'score': 0.25}, {'connected_gene': 'ZFPM2', 'score': 0.2}]
chr8	GH08I104616	104616485	104618760	1.42	[{'connected_gene': 'LRP12', 'score': 14.13}, {'connected_gene': 'DCSTAMP', 'score': 6.51}, {'connected_gene': 'GC08P104611', 'score': 0.44}, {'connected_gene': 'ZFPM2', 'score': 0.31}, {'connected_gene': 'ENSG00000283157', 'score': 0.17}]
chr8	GH08I104642	104642442	104644392	1.3	[{'connected_gene': 'LRP12', 'score': 13.25}, {'connected_gene': 'DCSTAMP', 'score': 7.44}, {'connected_gene': 'GC08P104611', 'score': 0.29}, {'connected_gene': 'ZFPM2', 'score': 0.23}, {'connected_gene': 'ENSG00000283157', 'score': 0.21}]
chr8	GH08I104617	104616269	104616402	0.2	[{'connected_gene': 'LRP12', 'score': 12.95}, {'connected_gene': 'GC08P104611', 'score': 0.77}, {'connected_gene': 'ZFPM2', 'score': 0.31}, {'connected_gene': 'ENSG00000283157', 'score': 0.17}]
chr8	GH08I104668	104668096	104668648	0.51	[{'connected_gene': 'LRP12', 'score': 11.65}, {'connected_gene': 'ENSG00000283157', 'score': 0.28}, {'connected_gene': 'GC08P104611', 'score': 0.22}, {'connected_gene': 'ZFPM2', 'score': 0.18}]
chr8	GH08I104587	104587778	104590201	2.01	[{'connected_gene': 'LRP12', 'score': 555.16}, {'connected_gene': 'ZFPM2', 'score': 550.77}, {'connected_gene': 'GC08P104568', 'score': 0.34}]
chr8	GH08I104670	104670913	104671042	0.49	[{'connected_gene': 'LRP12', 'score': 16.78}, {'connected_gene': 'ENSG00000283157', 'score': 0.29}, {'connected_gene': 'GC08P104611', 'score': 0.22}, {'connected_gene': 'ZFPM2', 'score': 0.18}]
chr8	GH08I104629	104629785	104631281	0.2	[{'connected_gene': 'LRP12', 'score': 11.72}, {'connected_gene': 'GC08P104611', 'score': 0.37}, {'connected_gene': 'ZFPM2', 'score': 0.28}, {'connected_gene': 'ENSG00000283157', 'score': 0.19}]
chr8	GH08I104768	104768999	104772761	0.74	[{'connected_gene': 'LRP12', 'score': 4.99}, {'connected_gene': 'GC08P104735', 'score': 0.28}, {'connected_gene': 'GC08M104805', 'score': 0.25}, {'connected_gene': 'ZFPM2', 'score': 0.09}]
chr8	GH08I104628	104628414	104629199	0.2	[{'connected_gene': 'LRP12', 'score': 16.58}, {'connected_gene': 'GC08P104611', 'score': 0.37}, {'connected_gene': 'ZFPM2', 'score': 0.28}, {'connected_gene': 'ENSG00000283157', 'score': 0.19}]
chr8	GH08I104626	104626253	104626895	0.43	[{'connected_gene': 'LRP12', 'score': 12.43}, {'connected_gene': 'GC08P104611', 'score': 0.37}, {'connected_gene': 'ZFPM2', 'score': 0.28}, {'connected_gene': 'ENSG00000283157', 'score': 0.18}]
chr8	GH08I104619	104619562	104620095	0.31	[{'connected_gene': 'LRP12', 'score': 12.61}, {'connected_gene': 'GC08P104611', 'score': 0.44}, {'connected_gene': 'ZFPM2', 'score': 0.31}, {'connected_gene': 'ENSG00000283157', 'score': 0.18}]
chr8	GH08I104677	104677194	104678882	0.64	[{'connected_gene': 'LRP12', 'score': 11.67}, {'connected_gene': 'ENSG00000283157', 'score': 0.31}, {'connected_gene': 'GC08P104611', 'score': 0.2}, {'connected_gene': 'ZFPM2', 'score': 0.17}]
chr8	GH08I104633	104633165	104636657	0.52	[{'connected_gene': 'LRP12', 'score': 16.69}, {'connected_gene': 'GC08P104611', 'score': 0.34}, {'connected_gene': 'ZFPM2', 'score': 0.26}, {'connected_gene': 'ENSG00000283157', 'score': 0.2}]
chr8	GH08I104624	104624494	104625990	0.31	[{'connected_gene': 'LRP12', 'score': 12.43}, {'connected_gene': 'GC08P104611', 'score': 0.39}, {'connected_gene': 'ZFPM2', 'score': 0.29}, {'connected_gene': 'ENSG00000283157', 'score': 0.18}]
chr8	GH08I104654	104654324	104655691	0.43	[{'connected_gene': 'LRP12', 'score': 11.87}, {'connected_gene': 'GC08P104611', 'score': 0.26}, {'connected_gene': 'ENSG00000283157', 'score': 0.25}, {'connected_gene': 'ZFPM2', 'score': 0.21}]
chr8	GH08I104621	104621677	104623862	1.39	[{'connected_gene': 'LRP12', 'score': 21.87}, {'connected_gene': 'GC08P104611', 'score': 0.39}, {'connected_gene': 'ZFPM2', 'score': 0.29}, {'connected_gene': 'ENSG00000283157', 'score': 0.18}]
chr8	GH08I104531	104531729	104532008	0.4	[{'connected_gene': 'LRP12', 'score': 11.98}, {'connected_gene': 'GC08M104502', 'score': 0.39}, {'connected_gene': 'NDUFA5P2', 'score': 0.29}]
chr8	GH08I104574	104574972	104575592	0.59	[{'connected_gene': 'GC08P104568', 'score': 0.44}, {'connected_gene': 'LRP12', 'score': 0.39}]