PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000338379	[[26107639, 26108364]]	[[26107697, 26108321]]
NM_005323	[[26107639, 26108364]]	[[26107697, 26108321]]

Promoter

Chrom	Start	End	Description
chr6	26108355	26108371	CAGE_peak_1_at_HIST1H1T_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I026060	26060001	26060400	0.51	[{'connected_gene': 'HIST1H4C', 'score': 12.21}, {'connected_gene': 'HFE', 'score': 11.49}, {'connected_gene': 'HIST1H1T', 'score': 11.31}, {'connected_gene': 'HIST1H2BD', 'score': 10.42}, {'connected_gene': 'HIST1H1E', 'score': 10.42}, {'connected_gene': 'ENSG00000272462', 'score': 10.26}, {'connected_gene': 'LARP1P1', 'score': 9.57}, {'connected_gene': 'HIST1H2BE', 'score': 9.55}, {'connected_gene': 'HMGN4', 'score': 5.25}, {'connected_gene': 'HIST1H1C', 'score': 0.77}, {'connected_gene': 'GC06P026086', 'score': 0.31}, {'connected_gene': 'GC06P025915', 'score': 0.11}]
chr6	GH06I026005	26005783	26005818	0.22	[{'connected_gene': 'HIST1H1T', 'score': 4.43}, {'connected_gene': 'HIST1H2AA', 'score': 4.41}, {'connected_gene': 'HIST1H2BA', 'score': 4.37}, {'connected_gene': 'HIST1H4G', 'score': 1.77}, {'connected_gene': 'ENSG00000272810', 'score': 0.44}, {'connected_gene': 'ENSG00000272558', 'score': 0.44}, {'connected_gene': 'GC06P025915', 'score': 0.16}]
chr6	GH06I026108	26108125	26108184	0.5	[{'connected_gene': 'HIST1H1T', 'score': 550.77}, {'connected_gene': 'PIR59416', 'score': 550.77}, {'connected_gene': 'PIR52376', 'score': 550.77}, {'connected_gene': 'PIR59509', 'score': 550.77}, {'connected_gene': 'PIR44386', 'score': 550.77}, {'connected_gene': 'GC06M026664', 'score': 550.77}, {'connected_gene': 'GC06M026665', 'score': 550.77}, {'connected_gene': 'PIR39675', 'score': 550.77}, {'connected_gene': 'PIR45260', 'score': 550.77}, {'connected_gene': 'PIR58072', 'score': 550.77}, {'connected_gene': 'ENSG00000272462', 'score': 5.92}, {'connected_gene': 'PIR32750', 'score': 0.37}, {'connected_gene': 'GC06P025915', 'score': 0.08}]
chr6	GH06I026086	26086701	26089450	1.97	[{'connected_gene': 'GC06P026086', 'score': 550.77}, {'connected_gene': 'HFE', 'score': 550.77}, {'connected_gene': 'ENSG00000272462', 'score': 28.76}, {'connected_gene': 'HIST1H1C', 'score': 11.86}, {'connected_gene': 'HIST1H1T', 'score': 11.81}, {'connected_gene': 'LARP1P1', 'score': 10.05}, {'connected_gene': 'HIST1H2BE', 'score': 10.04}, {'connected_gene': 'BTN3A2', 'score': 7.0}, {'connected_gene': 'GC06P026096', 'score': 0.44}, {'connected_gene': 'GC06P025915', 'score': 0.09}]
chr6	GH06I026087	26086353	26086502	0.31	[{'connected_gene': 'GC06P026086', 'score': 550.77}, {'connected_gene': 'HFE', 'score': 550.77}, {'connected_gene': 'ENSG00000272462', 'score': 27.95}, {'connected_gene': 'HIST1H1C', 'score': 11.87}, {'connected_gene': 'HIST1H1T', 'score': 11.81}, {'connected_gene': 'LARP1P1', 'score': 10.05}, {'connected_gene': 'HIST1H2BE', 'score': 10.03}, {'connected_gene': 'GC06P025915', 'score': 0.09}]
chr6	GH06I026114	26114861	26116272	0.43	[{'connected_gene': 'ENSG00000272462', 'score': 23.37}, {'connected_gene': 'HIST1H2BD', 'score': 11.52}, {'connected_gene': 'HIST1H1E', 'score': 11.52}, {'connected_gene': 'HFE', 'score': 11.15}, {'connected_gene': 'LARP1P1', 'score': 10.61}, {'connected_gene': 'HIST1H2BE', 'score': 10.58}, {'connected_gene': 'HIST1H1T', 'score': 0.44}, {'connected_gene': 'HIST1H2BC', 'score': 0.44}, {'connected_gene': 'PIR32750', 'score': 0.44}, {'connected_gene': 'GC06P025915', 'score': 0.08}]
chr6	GH06I026112	26112914	26113713	0.31	[{'connected_gene': 'ENSG00000272462', 'score': 13.03}, {'connected_gene': 'HIST1H2BD', 'score': 11.52}, {'connected_gene': 'HIST1H1E', 'score': 11.52}, {'connected_gene': 'HFE', 'score': 11.15}, {'connected_gene': 'LARP1P1', 'score': 10.59}, {'connected_gene': 'HIST1H2BE', 'score': 10.58}, {'connected_gene': 'HIST1H1T', 'score': 0.44}, {'connected_gene': 'PIR32750', 'score': 0.39}, {'connected_gene': 'GC06P025915', 'score': 0.08}]
chr6	GH06I026118	26118590	26119383	0.93	[{'connected_gene': 'ENSG00000272462', 'score': 13.31}, {'connected_gene': 'BTN3A2', 'score': 8.57}, {'connected_gene': 'PIR32750', 'score': 0.77}, {'connected_gene': 'HIST1H2BC', 'score': 0.77}, {'connected_gene': 'HIST1H1T', 'score': 0.39}, {'connected_gene': 'GC06P025915', 'score': 0.08}]