PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NM_021052	[[26217147, 26217711]]	[[26217202, 26217595]]

Promoter

Chrom	Start	End	Description
chr6	26033837	26033852	CAGE_peak_1_at_HIST1H2AB_5end,CAGE_peak_2_at_HIST1H2AE_5end
chr6	26217140	26217155	CAGE_peak_1_at_HIST1H2AE_5end
chr6	26217159	26217170	CAGE_peak_2_at_HIST1H2AB_5end,CAGE_peak_3_at_HIST1H2AE_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I026275	26275308	26278180	0.49	[{'connected_gene': 'HIST1H3E', 'score': 7.03}, {'connected_gene': 'HIST1H2AE', 'score': 5.93}, {'connected_gene': 'HIST1H4H', 'score': 5.79}, {'connected_gene': 'HIST1H2BI', 'score': 0.77}, {'connected_gene': 'LOC105374985', 'score': 0.44}]
chr6	GH06I026222	26222294	26227436	2.18	[{'connected_gene': 'HIST1H3E', 'score': 565.07}, {'connected_gene': 'ABT1', 'score': 55.65}, {'connected_gene': 'ZNF322', 'score': 53.69}, {'connected_gene': 'GUSBP2', 'score': 42.58}, {'connected_gene': 'BTN2A2', 'score': 35.39}, {'connected_gene': 'BTN2A1', 'score': 32.64}, {'connected_gene': 'HMGN4', 'score': 25.46}, {'connected_gene': 'HCG11', 'score': 13.8}, {'connected_gene': 'BTN2A3P', 'score': 13.65}, {'connected_gene': 'HIST1H2AE', 'score': 11.96}, {'connected_gene': 'ENSG00000272462', 'score': 4.77}, {'connected_gene': 'HIST1H2APS3', 'score': 0.44}]
chr6	GH06I025232	25232422	25233262	0.2	[{'connected_gene': 'HIST1H3D', 'score': 4.3}, {'connected_gene': 'HIST1H2AE', 'score': 4.02}, {'connected_gene': 'LOC100533655', 'score': 0.39}, {'connected_gene': 'GC06P025221', 'score': 0.39}, {'connected_gene': 'KATNBL1P5', 'score': 0.37}]
chr6	GH06I026120	26120087	26127861	2.85	[{'connected_gene': 'HIST1H2AC', 'score': 552.85}, {'connected_gene': 'PIR44445', 'score': 550.77}, {'connected_gene': 'HIST1H2BC', 'score': 550.77}, {'connected_gene': 'PIR32750', 'score': 550.77}, {'connected_gene': 'PIR33095', 'score': 550.77}, {'connected_gene': 'ABT1', 'score': 61.93}, {'connected_gene': 'HMGN4', 'score': 48.11}, {'connected_gene': 'BTN2A3P', 'score': 41.78}, {'connected_gene': 'BTN2A1', 'score': 40.03}, {'connected_gene': 'BTN2A2', 'score': 31.27}, {'connected_gene': 'ENSG00000272462', 'score': 28.42}, {'connected_gene': 'NUP50P2', 'score': 22.39}, {'connected_gene': 'BTN3A1', 'score': 13.66}, {'connected_gene': 'BTN3A3', 'score': 10.54}, {'connected_gene': 'HFE', 'score': 9.93}, {'connected_gene': 'HIST1H1D', 'score': 9.92}, {'connected_gene': 'BTN3A2', 'score': 8.7}, {'connected_gene': 'HIST1H1C', 'score': 7.05}, {'connected_gene': 'HIST1H2APS5', 'score': 6.41}, {'connected_gene': 'HIST1H4F', 'score': 2.02}, {'connected_gene': 'HIST1H4E', 'score': 1.89}, {'connected_gene': 'HIST1H1E', 'score': 1.78}, {'connected_gene': 'HIST1H4A', 'score': 1.75}, {'connected_gene': 'HIST1H2BH', 'score': 1.57}, {'connected_gene': 'HIST1H3C', 'score': 1.57}, {'connected_gene': 'HIST1H4B', 'score': 1.49}, {'connected_gene': 'HIST1H2AE', 'score': 1.38}, {'connected_gene': 'HIST1H3F', 'score': 1.36}, {'connected_gene': 'HIST1H2AB', 'score': 1.31}, {'connected_gene': 'HIST1H3A', 'score': 1.3}, {'connected_gene': 'HIST1H4H', 'score': 1.28}, {'connected_gene': 'GC06P025915', 'score': 0.08}]
chr6	GH06I026231	26231122	26231425	0.43	[{'connected_gene': 'HIST1H2APS3', 'score': 550.77}, {'connected_gene': 'HIST1H3E', 'score': 14.74}, {'connected_gene': 'HIST1H2AE', 'score': 11.35}]
chr6	GH06I026193	26193488	26208095	2.35	[{'connected_gene': 'HIST1H2AD', 'score': 550.77}, {'connected_gene': 'RPS10P1', 'score': 550.77}, {'connected_gene': 'HIST1H4E', 'score': 550.77}, {'connected_gene': 'HIST1H3D', 'score': 550.77}, {'connected_gene': 'HIST1H2BF', 'score': 550.77}, {'connected_gene': 'ENSG00000282988', 'score': 550.77}, {'connected_gene': 'ABT1', 'score': 69.38}, {'connected_gene': 'HMGN4', 'score': 55.25}, {'connected_gene': 'BTN2A3P', 'score': 45.73}, {'connected_gene': 'BTN2A1', 'score': 44.0}, {'connected_gene': 'BTN2A2', 'score': 30.15}, {'connected_gene': 'BTN3A2', 'score': 28.34}, {'connected_gene': 'HIST1H3E', 'score': 25.36}, {'connected_gene': 'BTN3A1', 'score': 13.87}, {'connected_gene': 'HIST1H2AE', 'score': 12.55}, {'connected_gene': 'HIST1H2BE', 'score': 11.87}, {'connected_gene': 'LARP1P1', 'score': 11.83}, {'connected_gene': 'HIST1H2APS3', 'score': 11.83}, {'connected_gene': 'HIST1H2BD', 'score': 10.81}, {'connected_gene': 'HIST1H1E', 'score': 10.81}, {'connected_gene': 'HIST1H4F', 'score': 10.71}, {'connected_gene': 'HIST1H2APS4', 'score': 10.69}, {'connected_gene': 'HIST1H3G', 'score': 10.69}, {'connected_gene': 'HIST1H4H', 'score': 10.62}, {'connected_gene': 'HIST1H4G', 'score': 10.58}, {'connected_gene': 'BTN3A3', 'score': 10.55}, {'connected_gene': 'HIST1H1D', 'score': 10.08}, {'connected_gene': 'HIST1H4C', 'score': 9.29}, {'connected_gene': 'ENSG00000272462', 'score': 5.72}, {'connected_gene': 'LOC102724851', 'score': 4.64}, {'connected_gene': 'GC06P027076', 'score': 0.77}, {'connected_gene': 'GC06M026651', 'score': 0.77}, {'connected_gene': 'PIR32312', 'score': 0.77}, {'connected_gene': 'PIR55512', 'score': 0.77}, {'connected_gene': 'GC06P027068', 'score': 0.77}, {'connected_gene': 'PIR46593', 'score': 0.77}, {'connected_gene': 'PIR40222', 'score': 0.77}, {'connected_gene': 'GC06P027077', 'score': 0.44}, {'connected_gene': 'HIST1H1PS1', 'score': 0.44}]
chr6	GH06I026214	26214313	26220778	2.5	[{'connected_gene': 'HIST1H2AE', 'score': 563.06}, {'connected_gene': 'PIR48825', 'score': 550.77}, {'connected_gene': 'GC06M026654', 'score': 550.77}, {'connected_gene': 'HIST1H2BG', 'score': 550.77}, {'connected_gene': 'ENSG00000277720', 'score': 550.77}, {'connected_gene': 'ABT1', 'score': 79.43}, {'connected_gene': 'HMGN4', 'score': 60.25}, {'connected_gene': 'BTN2A1', 'score': 52.44}, {'connected_gene': 'BTN2A3P', 'score': 52.08}, {'connected_gene': 'BTN2A2', 'score': 39.74}, {'connected_gene': 'HIST1H3E', 'score': 14.74}, {'connected_gene': 'BTN3A1', 'score': 10.87}, {'connected_gene': 'BTN3A3', 'score': 10.55}, {'connected_gene': 'HIST1H1D', 'score': 10.15}, {'connected_gene': 'LOC102724851', 'score': 5.53}]
chr6	GH06I026232	26232311	26236391	2.2	[{'connected_gene': 'HIST1H1D', 'score': 550.77}, {'connected_gene': 'PIR47167', 'score': 550.77}, {'connected_gene': 'HIST1H2APS3', 'score': 550.77}, {'connected_gene': 'PIR40027', 'score': 550.77}, {'connected_gene': 'PIR33202', 'score': 550.77}, {'connected_gene': 'PIR49597', 'score': 550.77}, {'connected_gene': 'GC06M026659', 'score': 550.77}, {'connected_gene': 'PIR44693', 'score': 550.77}, {'connected_gene': 'PIR62527', 'score': 550.77}, {'connected_gene': 'ABT1', 'score': 35.12}, {'connected_gene': 'BTN2A2', 'score': 20.23}, {'connected_gene': 'HMGN4', 'score': 19.43}, {'connected_gene': 'BTN2A3P', 'score': 18.6}, {'connected_gene': 'BTN2A1', 'score': 18.38}, {'connected_gene': 'HIST1H3E', 'score': 14.47}, {'connected_gene': 'HIST1H2AE', 'score': 12.53}, {'connected_gene': 'HIST1H2APS4', 'score': 10.58}, {'connected_gene': 'HIST1H3G', 'score': 10.58}, {'connected_gene': 'ENSG00000272462', 'score': 4.72}]
chr6	GH06I026248	26248916	26261823	2.45	[{'connected_gene': 'LOC105374986', 'score': 550.77}, {'connected_gene': 'HIST1H2BH', 'score': 550.77}, {'connected_gene': 'HIST1H3F', 'score': 550.77}, {'connected_gene': 'ABT1', 'score': 44.2}, {'connected_gene': 'HMGN4', 'score': 25.87}, {'connected_gene': 'BTN2A1', 'score': 25.81}, {'connected_gene': 'BTN2A3P', 'score': 20.72}, {'connected_gene': 'HIST1H3E', 'score': 20.63}, {'connected_gene': 'BTN2A2', 'score': 19.1}, {'connected_gene': 'ZNF322', 'score': 12.5}, {'connected_gene': 'GUSBP2', 'score': 12.05}, {'connected_gene': 'HIST1H2APS3', 'score': 11.76}, {'connected_gene': 'HIST1H4H', 'score': 11.2}, {'connected_gene': 'HIST1H2BE', 'score': 11.13}, {'connected_gene': 'LARP1P1', 'score': 11.11}, {'connected_gene': 'HIST1H4C', 'score': 9.73}, {'connected_gene': 'HIST1H2AE', 'score': 7.98}, {'connected_gene': 'ENSG00000272462', 'score': 6.19}, {'connected_gene': 'HIST1H2BD', 'score': 5.5}, {'connected_gene': 'BTN3A1', 'score': 5.05}, {'connected_gene': 'GC06M026655', 'score': 0.77}]
chr6	GH06I026186	26186489	26190760	2.32	[{'connected_gene': 'GC06M026662', 'score': 550.77}, {'connected_gene': 'HIST1H4D', 'score': 550.77}, {'connected_gene': 'ABT1', 'score': 58.1}, {'connected_gene': 'BTN2A2', 'score': 31.29}, {'connected_gene': 'HMGN4', 'score': 29.97}, {'connected_gene': 'BTN2A3P', 'score': 29.91}, {'connected_gene': 'BTN2A1', 'score': 28.96}, {'connected_gene': 'BTN3A2', 'score': 26.92}, {'connected_gene': 'HIST1H3E', 'score': 13.76}, {'connected_gene': 'HIST1H2AE', 'score': 11.13}, {'connected_gene': 'BTN3A1', 'score': 10.86}, {'connected_gene': 'BTN3A3', 'score': 10.55}, {'connected_gene': 'LOC102724851', 'score': 4.04}, {'connected_gene': 'GC06P027058', 'score': 0.77}]
chr6	GH06I026268	26268653	26275201	2.16	[{'connected_gene': 'GC06P027080', 'score': 550.77}, {'connected_gene': 'HIST1H2BI', 'score': 550.77}, {'connected_gene': 'HIST1H2APS4', 'score': 550.77}, {'connected_gene': 'HIST1H3G', 'score': 550.77}, {'connected_gene': 'GC06M026656', 'score': 550.77}, {'connected_gene': 'ABT1', 'score': 30.17}, {'connected_gene': 'BTN2A3P', 'score': 14.51}, {'connected_gene': 'BTN2A1', 'score': 14.37}, {'connected_gene': 'HMGN4', 'score': 14.08}, {'connected_gene': 'GUSBP2', 'score': 12.06}, {'connected_gene': 'BTN2A2', 'score': 10.34}, {'connected_gene': 'ZNF322', 'score': 9.95}, {'connected_gene': 'HIST1H3E', 'score': 7.04}, {'connected_gene': 'ENSG00000272462', 'score': 6.07}, {'connected_gene': 'HIST1H4H', 'score': 5.89}, {'connected_gene': 'HIST1H2AE', 'score': 5.69}, {'connected_gene': 'BTN3A2', 'score': 4.67}]
chr6	GH06I026182	26182364	26186048	1.72	[{'connected_gene': 'GC06P027058', 'score': 550.77}, {'connected_gene': 'HIST1H2BE', 'score': 550.39}, {'connected_gene': 'HIST1H3E', 'score': 11.03}, {'connected_gene': 'HIST1H2AE', 'score': 11.02}, {'connected_gene': 'ENSG00000272462', 'score': 5.7}, {'connected_gene': 'BTN2A1', 'score': 4.36}, {'connected_gene': 'LOC102724851', 'score': 3.77}, {'connected_gene': 'GC06M026662', 'score': 0.77}]
chr6	GH06I026170	26169332	26174630	1.74	[{'connected_gene': 'ENSG00000283064', 'score': 550.77}, {'connected_gene': 'HIST1H2BE', 'score': 550.77}, {'connected_gene': 'BTN3A2', 'score': 11.79}, {'connected_gene': 'TRIM38', 'score': 11.14}, {'connected_gene': 'HIST1H2BD', 'score': 9.6}, {'connected_gene': 'ENSG00000272462', 'score': 9.28}, {'connected_gene': 'HIST1H2AE', 'score': 5.46}, {'connected_gene': 'HIST1H3E', 'score': 4.95}, {'connected_gene': 'LOC102724851', 'score': 4.16}, {'connected_gene': 'GC06P027078', 'score': 0.44}]