PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr6	114292266	114292283	CAGE_peak_2_at_HDAC2_5end
chr6	114292284	114292359	CAGE_peak_1_at_HDAC2_5end
chr6	114292467	114292474	CAGE_peak_4_at_HDAC2_5end
chr6	114292476	114292491	CAGE_peak_3_at_HDAC2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I113854	113854047	113861593	2.98	[{'connected_gene': 'MARCKS', 'score': 559.25}, {'connected_gene': 'FLJ34503', 'score': 15.59}, {'connected_gene': 'RPS27AP11', 'score': 10.54}, {'connected_gene': 'HDAC2', 'score': 10.53}, {'connected_gene': 'GC06P113861', 'score': 0.77}]
chr6	GH06I113994	113994564	114000935	1.3	[{'connected_gene': 'HDAC2', 'score': 12.12}, {'connected_gene': 'FLJ34503', 'score': 9.83}, {'connected_gene': 'HDAC2-AS2', 'score': 0.31}]
chr6	GH06I113968	113968989	113972193	2.32	[{'connected_gene': 'HDAC2', 'score': 565.24}, {'connected_gene': 'HDAC2-AS2', 'score': 550.77}, {'connected_gene': 'RPS27AP11', 'score': 26.29}, {'connected_gene': 'FLJ34503', 'score': 4.4}]
chr6	GH06I114009	114009277	114012485	0.38	[{'connected_gene': 'HDAC2', 'score': 550.77}, {'connected_gene': 'HDAC2-AS2', 'score': 0.26}]
chr6	GH06I114008	114008337	114008728	0.4	[{'connected_gene': 'HDAC2', 'score': 0.77}, {'connected_gene': 'HDAC2-AS2', 'score': 0.28}]
chr6	GH06I114001	114001380	114003234	0.31	[{'connected_gene': 'HDAC2', 'score': 0.44}, {'connected_gene': 'HDAC2-AS2', 'score': 0.29}]
chr6	GH06I113936	113936237	113936346	0.57	[{'connected_gene': 'FLJ34503', 'score': 10.55}, {'connected_gene': 'GC06M113929', 'score': 0.77}, {'connected_gene': 'HDAC2-AS2', 'score': 0.29}, {'connected_gene': 'HDAC2', 'score': 0.18}]
chr6	GH06I114341	114341170	114344226	1.57	[{'connected_gene': 'HS3ST5', 'score': 550.77}, {'connected_gene': 'HDAC2', 'score': 13.38}, {'connected_gene': 'RPS27AP11', 'score': 12.19}, {'connected_gene': 'RNA5SP213', 'score': 0.13}, {'connected_gene': 'GC06M114221', 'score': 0.13}, {'connected_gene': 'HDAC2-AS2', 'score': 0.05}]
chr6	GH06I113982	113982104	113983255	0.57	[{'connected_gene': 'HDAC2-AS2', 'score': 0.39}, {'connected_gene': 'HDAC2', 'score': 0.31}]
chr6	GH06I113967	113967201	113967400	0.2	[{'connected_gene': 'HDAC2-AS2', 'score': 0.77}, {'connected_gene': 'GC06M113929', 'score': 0.29}, {'connected_gene': 'HDAC2', 'score': 0.26}]
chr6	GH06I114068	114068280	114069400	0.2	[{'connected_gene': 'NUDT19P3', 'score': 11.62}, {'connected_gene': 'HDAC2', 'score': 11.59}, {'connected_gene': 'RPSAP43', 'score': 0.37}, {'connected_gene': 'GC06P114038', 'score': 0.29}, {'connected_gene': 'HDAC2-AS2', 'score': 0.15}, {'connected_gene': 'HS3ST5', 'score': 0.06}]
chr6	GH06I114016	114016128	114018517	0.58	[{'connected_gene': 'NUDT19P3', 'score': 0.77}, {'connected_gene': 'HDAC2', 'score': 0.44}, {'connected_gene': 'HDAC2-AS2', 'score': 0.25}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000522371	[[114277792, 114277857], [114279812, 114279930], [114281069, 114281182], [114283530, 114283558], [114332294, 114332472]]	[[114277792, 114277857], [114279812, 114279930], [114281069, 114281144]]
ENST00000519065	[[114254191, 114262252], [114262871, 114262929], [114264514, 114264670], [114265443, 114265574], [114266525, 114266634], [114267171, 114267312], [114270142, 114270251], [114270331, 114270424], [114274440, 114274582], [114277176, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281182], [114292020, 114292449]]	[[114262221, 114262252], [114262871, 114262929], [114264514, 114264670], [114265443, 114265574], [114266525, 114266634], [114267171, 114267312], [114270142, 114270251], [114270331, 114270424], [114274440, 114274582], [114277176, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281182], [114292020, 114292072]]
ENST00000398283	[[114257319, 114262252], [114262871, 114262929], [114264514, 114264670], [114265443, 114265574], [114266525, 114266634], [114267171, 114267312], [114270142, 114270251], [114270331, 114270424], [114274440, 114274582], [114277176, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281182], [114292020, 114292359]]	[[114262221, 114262252], [114262871, 114262929], [114264514, 114264670], [114265443, 114265574], [114266525, 114266634], [114267171, 114267312], [114270142, 114270251], [114270331, 114270424], [114274440, 114274582], [114277176, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281182], [114292020, 114292354]]
ENST00000523334	[[114261881, 114262252], [114262871, 114262929], [114264514, 114264670], [114265443, 114265574], [114266525, 114266634], [114267171, 114270424], [114274440, 114274582], [114277176, 114277766]]	None
ENST00000519108	[[114261881, 114262252], [114262871, 114262929], [114264514, 114264670], [114265443, 114265574], [114266525, 114266634], [114267171, 114267312], [114270142, 114270251], [114270331, 114270424], [114274440, 114274582], [114277176, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281182], [114291643, 114291888]]	[[114262221, 114262252], [114262871, 114262929], [114264514, 114264670], [114265443, 114265574], [114266525, 114266634], [114267171, 114267312], [114270142, 114270251], [114270331, 114270424], [114274440, 114274582], [114277176, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281144]]
ENST00000368632	[[114261881, 114262252], [114262871, 114262929], [114264514, 114264670], [114265443, 114265574], [114266525, 114266634], [114267171, 114267312], [114270142, 114270251], [114270331, 114270424], [114274440, 114274582], [114277176, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281182], [114283530, 114283558], [114292020, 114292321]]	[[114262221, 114262252], [114262871, 114262929], [114264514, 114264670], [114265443, 114265574], [114266525, 114266634], [114267171, 114267312], [114270142, 114270251], [114270331, 114270424], [114274440, 114274582], [114277176, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281144]]
ENST00000520746	[[114266543, 114266634], [114267171, 114267312], [114270142, 114270251], [114270331, 114270487]]	None
ENST00000518756	[[114274563, 114274582], [114277176, 114277315], [114277782, 114278450]]	None
ENST00000425835	[[114277090, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281182], [114292020, 114292042]]	[[114277157, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281182], [114292020, 114292042]]
ENST00000523628	[[114277273, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281182], [114289493, 114289694]]	[[114277273, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281144]]
ENST00000521610	[[114277282, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281182], [114291418, 114291659]]	[[114277282, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281144]]
ENST00000521163	[[114277833, 114277857], [114279812, 114279930], [114281069, 114281203], [114292020, 114292301]]	[[114277833, 114277857], [114279812, 114279930], [114281069, 114281203], [114292020, 114292072]]
ENST00000518690	[[114277837, 114277857], [114279812, 114279930], [114281069, 114281182], [114289797, 114289860], [114291643, 114291893]]	[[114277837, 114277857], [114279812, 114279930], [114281069, 114281144]]
ENST00000523240	[[114277853, 114277857], [114279812, 114279930], [114281069, 114281182], [114283530, 114283558], [114289797, 114289860], [114291643, 114291874]]	[[114277853, 114277857], [114279812, 114279930], [114281069, 114281144]]
ENST00000521233	[[114279590, 114279930], [114281069, 114281182], [114292020, 114292300]]	None
ENST00000520895	[[114279825, 114279930], [114281069, 114281182], [114289797, 114289860], [114292020, 114292290]]	[[114279825, 114279930], [114281069, 114281144]]
ENST00000524334	[[114279847, 114279930], [114281069, 114281182], [114283530, 114283558], [114289797, 114289860], [114292020, 114292303]]	[[114279847, 114279930], [114281069, 114281144]]
ENST00000520170	[[114280773, 114281182], [114292020, 114292301]]	None
NR_073443	[[114257319, 114262252], [114262871, 114262929], [114264514, 114264670], [114265443, 114265574], [114266525, 114266634], [114267171, 114267312], [114270142, 114270251], [114270331, 114270424], [114274440, 114274582], [114277176, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281182], [114291643, 114291888]]	None
NR_033441	[[114257319, 114262252], [114262871, 114262929], [114264514, 114264670], [114265443, 114265574], [114266525, 114266634], [114267171, 114267312], [114270142, 114270251], [114270331, 114270424], [114274440, 114274582], [114277176, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281182], [114283530, 114283558], [114292020, 114292359]]	None
NM_001527	[[114257319, 114262252], [114262871, 114262929], [114264514, 114264670], [114265443, 114265574], [114266525, 114266634], [114267171, 114267312], [114270142, 114270251], [114270331, 114270424], [114274440, 114274582], [114277176, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281182], [114292020, 114292359]]	[[114262221, 114262252], [114262871, 114262929], [114264514, 114264670], [114265443, 114265574], [114266525, 114266634], [114267171, 114267312], [114270142, 114270251], [114270331, 114270424], [114274440, 114274582], [114277176, 114277315], [114277782, 114277857], [114279812, 114279930], [114281069, 114281182], [114292020, 114292072]]