PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000225525	[[3566195, 3567179], [3567488, 3567566], [3567972, 3568092], [3571781, 3571976]]	[[3567041, 3567179], [3567488, 3567566], [3567972, 3568092], [3571781, 3571820]]
NM_014604	[[3566186, 3567179], [3567488, 3567566], [3567972, 3568092], [3571781, 3571973]]	[[3567041, 3567179], [3567488, 3567566], [3567972, 3568092], [3571781, 3571820]]
NM_001204698	[[3566186, 3567179], [3567972, 3568092], [3571781, 3571973]]	[[3567041, 3567179], [3567972, 3568092], [3571781, 3571820]]

Promoter

Chrom	Start	End	Description
chr17	3571863	3571881	CAGE_peak_1_at_TAX1BP3_5end
chr17	3571887	3571918	CAGE_peak_2_at_TAX1BP3_5end
chr17	3571934	3571935	CAGE_peak_3_at_TAX1BP3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I003791	3791400	3792200	1.18	[{'connected_gene': 'HASPIN', 'score': 11.98}, {'connected_gene': 'NCBP3', 'score': 11.47}, {'connected_gene': 'EMC6', 'score': 11.22}, {'connected_gene': 'TAX1BP3', 'score': 11.22}, {'connected_gene': 'CTNS', 'score': 2.97}, {'connected_gene': 'ZZEF1', 'score': 2.4}, {'connected_gene': 'P2RX1', 'score': 1.35}, {'connected_gene': 'ITGAE', 'score': 0.44}, {'connected_gene': 'ENSG00000262358', 'score': 0.21}]
chr17	GH17I003759	3759169	3760497	0.52	[{'connected_gene': 'HASPIN', 'score': 12.77}, {'connected_gene': 'NCBP3', 'score': 11.77}, {'connected_gene': 'TAX1BP3', 'score': 11.43}, {'connected_gene': 'EMC6', 'score': 11.43}, {'connected_gene': 'P2RX5', 'score': 11.26}, {'connected_gene': 'ENSG00000262358', 'score': 0.29}, {'connected_gene': 'ITGAE', 'score': 0.26}]
chr17	GH17I003792	3792477	3793075	0.4	[{'connected_gene': 'HASPIN', 'score': 11.98}, {'connected_gene': 'NCBP3', 'score': 11.47}, {'connected_gene': 'TAX1BP3', 'score': 11.22}, {'connected_gene': 'EMC6', 'score': 11.22}, {'connected_gene': 'ITGAE', 'score': 0.44}, {'connected_gene': 'ENSG00000262358', 'score': 0.21}]
chr17	GH17I003789	3789718	3790357	0.2	[{'connected_gene': 'HASPIN', 'score': 12.24}, {'connected_gene': 'NCBP3', 'score': 12.23}, {'connected_gene': 'TAX1BP3', 'score': 11.22}, {'connected_gene': 'EMC6', 'score': 11.22}, {'connected_gene': 'ITGAE', 'score': 0.39}, {'connected_gene': 'ENSG00000262358', 'score': 0.21}]
chr17	GH17I003790	3790401	3790800	0.4	[{'connected_gene': 'HASPIN', 'score': 11.98}, {'connected_gene': 'NCBP3', 'score': 11.46}, {'connected_gene': 'TAX1BP3', 'score': 11.22}, {'connected_gene': 'EMC6', 'score': 11.22}, {'connected_gene': 'ITGAE', 'score': 0.39}, {'connected_gene': 'ENSG00000262358', 'score': 0.21}]
chr17	GH17I003760	3760715	3761761	0.31	[{'connected_gene': 'HASPIN', 'score': 12.58}, {'connected_gene': 'NCBP3', 'score': 11.77}, {'connected_gene': 'TAX1BP3', 'score': 11.43}, {'connected_gene': 'EMC6', 'score': 11.43}, {'connected_gene': 'ENSG00000262358', 'score': 0.29}, {'connected_gene': 'ITGAE', 'score': 0.26}]
chr17	GH17I003665	3665838	3670016	2.24	[{'connected_gene': 'TAX1BP3', 'score': 571.94}, {'connected_gene': 'EMC6', 'score': 550.77}, {'connected_gene': 'CTNS', 'score': 16.81}, {'connected_gene': 'P2RX5', 'score': 11.5}, {'connected_gene': 'HASPIN', 'score': 10.62}, {'connected_gene': 'RPL21P125', 'score': 0.77}, {'connected_gene': 'P2RX5-TAX1BP3', 'score': 0.31}]
chr17	GH17I003747	3747585	3749358	0.63	[{'connected_gene': 'TAX1BP3', 'score': 4.86}, {'connected_gene': 'ENSG00000262358', 'score': 0.37}, {'connected_gene': 'ITGAE', 'score': 0.23}]
chr17	GH17I002939	2939674	2940794	0.86	[{'connected_gene': 'TAX1BP3', 'score': 7.02}, {'connected_gene': 'GC17P002937', 'score': 0.77}, {'connected_gene': 'LOC101927911', 'score': 0.31}, {'connected_gene': 'RAP1GAP2', 'score': 0.09}]
chr17	GH17I003639	3639602	3642424	1.17	[{'connected_gene': 'CTNS', 'score': 23.37}, {'connected_gene': 'TAX1BP3', 'score': 5.07}, {'connected_gene': 'LOC105371493', 'score': 0.39}]
chr17	GH17I003634	3634583	3637601	2.06	[{'connected_gene': 'CTNS', 'score': 576.52}, {'connected_gene': 'SHPK', 'score': 556.08}, {'connected_gene': 'ENSG00000262304', 'score': 550.77}, {'connected_gene': 'MYBBP1A', 'score': 18.53}, {'connected_gene': 'TAX1BP3', 'score': 16.44}, {'connected_gene': 'LOC105371492', 'score': 13.12}, {'connected_gene': 'ANKFY1', 'score': 12.6}, {'connected_gene': 'EMC6', 'score': 11.4}, {'connected_gene': 'LOC100422717', 'score': 0.37}]
chr17	GH17I004475	4475174	4484305	1.21	[{'connected_gene': 'GGT6', 'score': 11.03}, {'connected_gene': 'TAX1BP3', 'score': 6.62}, {'connected_gene': 'SPNS3', 'score': 4.6}, {'connected_gene': 'PFN1', 'score': 4.24}, {'connected_gene': 'ENSG00000262823', 'score': 0.44}, {'connected_gene': 'PIR52974', 'score': 0.28}]
chr17	GH17I003657	3657477	3661589	1.07	[{'connected_gene': 'LOC105371492', 'score': 550.77}, {'connected_gene': 'CTNS', 'score': 58.08}, {'connected_gene': 'SHPK', 'score': 12.87}, {'connected_gene': 'P2RX5', 'score': 11.72}, {'connected_gene': 'TAX1BP3', 'score': 6.57}, {'connected_gene': 'GC17P003667', 'score': 0.44}, {'connected_gene': 'GC17P003669', 'score': 0.44}, {'connected_gene': 'GC17P003666', 'score': 0.44}]
chr17	GH17I003664	3664084	3665260	0.38	[{'connected_gene': 'GC17P003667', 'score': 550.77}, {'connected_gene': 'GC17P003669', 'score': 550.77}, {'connected_gene': 'RPL21P125', 'score': 550.77}, {'connected_gene': 'GC17P003666', 'score': 550.77}, {'connected_gene': 'TAX1BP3', 'score': 20.27}, {'connected_gene': 'CTNS', 'score': 17.09}, {'connected_gene': 'P2RX5', 'score': 11.48}, {'connected_gene': 'HASPIN', 'score': 10.62}, {'connected_gene': 'LOC105371492', 'score': 0.44}, {'connected_gene': 'P2RX5-TAX1BP3', 'score': 0.29}]