PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000331462	[[177053306, 177054181], [177054535, 177055688]]	[[177053529, 177054181], [177054535, 177054870]]
NM_024501	[[177053306, 177054181], [177054535, 177055635]]	[[177053529, 177054181], [177054535, 177054870]]

Promoter

Chrom	Start	End	Description
chr2	177053386	177053402	CAGE_peak_1_at_HOXD1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I176489	176489749	176492249	1.08	[{'connected_gene': 'HAGLR', 'score': 10.94}, {'connected_gene': 'HOXD1', 'score': 10.94}, {'connected_gene': 'HOXD3', 'score': 10.52}, {'connected_gene': 'ENSG00000229434', 'score': 0.37}, {'connected_gene': 'PPIAP67', 'score': 0.1}]
chr2	GH02I176492	176492585	176494001	0.6	[{'connected_gene': 'HAGLR', 'score': 10.94}, {'connected_gene': 'HOXD1', 'score': 10.94}, {'connected_gene': 'HOXD3', 'score': 10.52}, {'connected_gene': 'ENSG00000222043', 'score': 5.16}, {'connected_gene': 'ENSG00000229434', 'score': 0.39}, {'connected_gene': 'PPIAP67', 'score': 0.1}]
chr2	GH02I176500	176500993	176501162	0.46	[{'connected_gene': 'HAGLR', 'score': 10.01}, {'connected_gene': 'HOXD1', 'score': 10.01}, {'connected_gene': 'ENSG00000229434', 'score': 0.44}, {'connected_gene': 'PPIAP67', 'score': 0.1}]
chr2	GH02I176297	176297070	176297458	0.95	[{'connected_gene': 'HAGLR', 'score': 10.05}, {'connected_gene': 'HOXD1', 'score': 10.05}, {'connected_gene': 'GC02P176303', 'score': 0.44}, {'connected_gene': 'GC02P176273', 'score': 0.34}, {'connected_gene': 'MTX2', 'score': 0.31}]
chr2	GH02I176496	176496217	176497145	0.2	[{'connected_gene': 'HAGLR', 'score': 10.94}, {'connected_gene': 'HOXD1', 'score': 10.94}, {'connected_gene': 'HOXD-AS2', 'score': 10.56}, {'connected_gene': 'HOXD3', 'score': 10.56}, {'connected_gene': 'ENSG00000229434', 'score': 0.39}, {'connected_gene': 'PPIAP67', 'score': 0.1}]
chr2	GH02I176574	176574635	176574846	0.66	[{'connected_gene': 'HAGLR', 'score': 9.39}, {'connected_gene': 'HOXD1', 'score': 9.39}, {'connected_gene': 'GC02P176590', 'score': 0.37}, {'connected_gene': 'ENSG00000236231', 'score': 0.26}]
chr2	GH02I176514	176514354	176516942	0.2	[{'connected_gene': 'HAGLR', 'score': 10.57}, {'connected_gene': 'HOXD1', 'score': 10.57}, {'connected_gene': 'ENSG00000229434', 'score': 0.44}, {'connected_gene': 'ENSG00000236231', 'score': 0.37}]
chr2	GH02I176073	176073451	176073970	0.76	[{'connected_gene': 'HOXD11', 'score': 11.35}, {'connected_gene': 'HOXD12', 'score': 11.34}, {'connected_gene': 'HOXD10', 'score': 11.34}, {'connected_gene': 'HOXD1', 'score': 10.14}, {'connected_gene': 'HAGLR', 'score': 10.13}, {'connected_gene': 'LNPK', 'score': 4.46}, {'connected_gene': 'EVX2', 'score': 0.39}, {'connected_gene': 'GC02M176020', 'score': 0.23}]
chr2	GH02I176128	176128150	176141429	2.47	[{'connected_gene': 'HOXD8', 'score': 558.68}, {'connected_gene': 'HOXD3', 'score': 550.77}, {'connected_gene': 'HOXD1', 'score': 21.87}, {'connected_gene': 'HAGLR', 'score': 20.72}, {'connected_gene': 'ATF2', 'score': 19.11}, {'connected_gene': 'HOXD4', 'score': 18.94}, {'connected_gene': 'HOXD9', 'score': 15.79}, {'connected_gene': 'HAGLROS', 'score': 11.59}, {'connected_gene': 'HOXD11', 'score': 10.66}, {'connected_gene': 'HOXD-AS2', 'score': 5.12}, {'connected_gene': 'LOC100129455', 'score': 0.44}, {'connected_gene': 'GC02M176128', 'score': 0.44}]
chr2	GH02I176544	176544514	176546214	0.31	[{'connected_gene': 'HOXD4', 'score': 10.95}, {'connected_gene': 'MIR10B', 'score': 10.95}, {'connected_gene': 'HOXD3', 'score': 10.95}, {'connected_gene': 'HAGLR', 'score': 10.78}, {'connected_gene': 'HOXD1', 'score': 10.78}, {'connected_gene': 'HOXD10', 'score': 10.21}, {'connected_gene': 'HOXD11', 'score': 10.21}, {'connected_gene': 'ENSG00000236231', 'score': 0.39}, {'connected_gene': 'GC02P176590', 'score': 0.25}]
chr2	GH02I176449	176449693	176450384	0.43	[{'connected_gene': 'HOXD4', 'score': 10.83}, {'connected_gene': 'HOXD3', 'score': 10.83}, {'connected_gene': 'HOXD8', 'score': 10.72}, {'connected_gene': 'HOXD-AS2', 'score': 10.68}, {'connected_gene': 'MIR10B', 'score': 10.31}, {'connected_gene': 'HAGLR', 'score': 9.71}, {'connected_gene': 'HOXD1', 'score': 9.71}, {'connected_gene': 'HOXD11', 'score': 9.62}, {'connected_gene': 'HOXD10', 'score': 9.62}, {'connected_gene': 'ENSG00000229434', 'score': 0.22}, {'connected_gene': 'PPIAP67', 'score': 0.14}]
chr2	GH02I176561	176561611	176562011	0.42	[{'connected_gene': 'HOXD3', 'score': 10.34}, {'connected_gene': 'HAGLR', 'score': 10.16}, {'connected_gene': 'HOXD1', 'score': 10.16}, {'connected_gene': 'HOXD4', 'score': 9.94}, {'connected_gene': 'MIR10B', 'score': 9.77}, {'connected_gene': 'GC02P176590', 'score': 0.31}, {'connected_gene': 'ENSG00000236231', 'score': 0.29}]
chr2	GH02I176562	176562021	176563022	0.75	[{'connected_gene': 'HOXD3', 'score': 10.34}, {'connected_gene': 'HAGLR', 'score': 10.16}, {'connected_gene': 'HOXD1', 'score': 10.16}, {'connected_gene': 'HOXD4', 'score': 9.94}, {'connected_gene': 'MIR10B', 'score': 9.77}, {'connected_gene': 'GC02P176590', 'score': 0.31}, {'connected_gene': 'ENSG00000236231', 'score': 0.29}]
chr2	GH02I176621	176621357	176621762	0.44	[{'connected_gene': 'HOXD3', 'score': 22.48}, {'connected_gene': 'HOXD10', 'score': 10.2}, {'connected_gene': 'HOXD11', 'score': 10.2}, {'connected_gene': 'HAGLR', 'score': 9.63}, {'connected_gene': 'HOXD1', 'score': 9.63}, {'connected_gene': 'LOC105373754', 'score': 0.44}, {'connected_gene': 'LINC01117', 'score': 0.37}]
chr2	GH02I176503	176503294	176504900	0.67	[{'connected_gene': 'HOXD3', 'score': 10.56}, {'connected_gene': 'HOXD4', 'score': 10.15}, {'connected_gene': 'MIR10B', 'score': 10.15}, {'connected_gene': 'HAGLR', 'score': 10.01}, {'connected_gene': 'HOXD1', 'score': 10.01}, {'connected_gene': 'ENSG00000229434', 'score': 0.77}, {'connected_gene': 'PPIAP67', 'score': 0.1}]
chr2	GH02I176186	176186870	176189800	1.65	[{'connected_gene': 'HOXD1', 'score': 563.95}, {'connected_gene': 'HAGLR', 'score': 550.77}, {'connected_gene': 'MIR7704', 'score': 550.77}, {'connected_gene': 'HAGLROS', 'score': 0.39}]
chr2	GH02I176552	176552179	176555202	1.32	[{'connected_gene': 'HNRNPA3', 'score': 14.81}, {'connected_gene': 'HOXD4', 'score': 11.42}, {'connected_gene': 'HOXD3', 'score': 11.42}, {'connected_gene': 'HOXD-AS2', 'score': 11.25}, {'connected_gene': 'MIR10B', 'score': 10.48}, {'connected_gene': 'HAGLR', 'score': 10.2}, {'connected_gene': 'HOXD1', 'score': 10.2}, {'connected_gene': 'HOXD13', 'score': 9.54}, {'connected_gene': 'ENSG00000236231', 'score': 0.34}, {'connected_gene': 'GC02P176590', 'score': 0.28}]
chr2	GH02I176177	176177335	176179500	0.9	[{'connected_gene': 'HAGLROS', 'score': 582.37}, {'connected_gene': 'HAGLR', 'score': 15.04}, {'connected_gene': 'HOXD1', 'score': 12.62}, {'connected_gene': 'HOXD4', 'score': 11.51}, {'connected_gene': 'HOXD3', 'score': 11.46}, {'connected_gene': 'HOXD-AS2', 'score': 10.96}, {'connected_gene': 'MIR10B', 'score': 10.41}, {'connected_gene': 'HOXD11', 'score': 9.9}, {'connected_gene': 'HOXD12', 'score': 9.89}, {'connected_gene': 'HOXD10', 'score': 9.7}, {'connected_gene': 'HOXD13', 'score': 9.4}]
chr2	GH02I176159	176159703	176162723	0.54	[{'connected_gene': 'HAGLROS', 'score': 29.24}, {'connected_gene': 'HAGLR', 'score': 27.29}, {'connected_gene': 'HOXD1', 'score': 24.54}, {'connected_gene': 'HOXD-AS2', 'score': 11.78}, {'connected_gene': 'HOXD9', 'score': 11.72}, {'connected_gene': 'HOXD3', 'score': 11.63}, {'connected_gene': 'HOXD8', 'score': 11.59}, {'connected_gene': 'HOXD10', 'score': 11.41}, {'connected_gene': 'HOXD11', 'score': 11.4}, {'connected_gene': 'HOXD13', 'score': 11.27}, {'connected_gene': 'HOXD12', 'score': 10.98}, {'connected_gene': 'ENSG00000272729', 'score': 0.77}, {'connected_gene': 'ENSG00000278500', 'score': 0.39}]
chr2	GH02I176565	176565450	176566791	0.6	[{'connected_gene': 'HOXD-AS2', 'score': 10.76}, {'connected_gene': 'HOXD3', 'score': 10.76}, {'connected_gene': 'HAGLR', 'score': 10.16}, {'connected_gene': 'HOXD1', 'score': 10.16}, {'connected_gene': 'HOXD11', 'score': 10.08}, {'connected_gene': 'HOXD4', 'score': 9.93}, {'connected_gene': 'MIR10B', 'score': 9.77}, {'connected_gene': 'GC02P176590', 'score': 0.34}, {'connected_gene': 'ENSG00000236231', 'score': 0.29}]