PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000306324	[[177015949, 177016794], [177017335, 177017954]]	[[177016361, 177016794], [177017335, 177017670]]
NM_014621	[[177016112, 177016794], [177017335, 177017951]]	[[177016361, 177016794], [177017335, 177017670]]

Promoter

Chrom	Start	End	Description
chr2	177016272	177016286	CAGE_peak_2_at_HOXD4_5end
chr2	177016336	177016350	CAGE_peak_1_at_HOXD4_5end
chr2	177016535	177016548	CAGE_peak_3_at_HOXD4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I175180	175180126	175182367	2.11	[{'connected_gene': 'ATP5MC3', 'score': 578.85}, {'connected_gene': 'GC02P175182', 'score': 550.77}, {'connected_gene': 'HOXD9', 'score': 10.18}, {'connected_gene': 'CIR1', 'score': 10.0}, {'connected_gene': 'HOXD4', 'score': 9.8}, {'connected_gene': 'GC02M175181', 'score': 0.77}]
chr2	GH02I176128	176128150	176141429	2.47	[{'connected_gene': 'HOXD8', 'score': 558.68}, {'connected_gene': 'HOXD3', 'score': 550.77}, {'connected_gene': 'HOXD1', 'score': 21.87}, {'connected_gene': 'HAGLR', 'score': 20.72}, {'connected_gene': 'ATF2', 'score': 19.11}, {'connected_gene': 'HOXD4', 'score': 18.94}, {'connected_gene': 'HOXD9', 'score': 15.79}, {'connected_gene': 'HAGLROS', 'score': 11.59}, {'connected_gene': 'HOXD11', 'score': 10.66}, {'connected_gene': 'HOXD-AS2', 'score': 5.12}, {'connected_gene': 'LOC100129455', 'score': 0.44}, {'connected_gene': 'GC02M176128', 'score': 0.44}]
chr2	GH02I176544	176544514	176546214	0.31	[{'connected_gene': 'HOXD4', 'score': 10.95}, {'connected_gene': 'MIR10B', 'score': 10.95}, {'connected_gene': 'HOXD3', 'score': 10.95}, {'connected_gene': 'HAGLR', 'score': 10.78}, {'connected_gene': 'HOXD1', 'score': 10.78}, {'connected_gene': 'HOXD10', 'score': 10.21}, {'connected_gene': 'HOXD11', 'score': 10.21}, {'connected_gene': 'ENSG00000236231', 'score': 0.39}, {'connected_gene': 'GC02P176590', 'score': 0.25}]
chr2	GH02I176455	176455013	176456765	0.9	[{'connected_gene': 'HOXD4', 'score': 11.1}, {'connected_gene': 'MIR10B', 'score': 11.1}, {'connected_gene': 'HOXD3', 'score': 11.1}, {'connected_gene': 'HOXD11', 'score': 10.04}, {'connected_gene': 'HOXD10', 'score': 10.04}, {'connected_gene': 'ENSG00000229434', 'score': 0.23}, {'connected_gene': 'PPIAP67', 'score': 0.13}]
chr2	GH02I176175	176175133	176175282	0.6	[{'connected_gene': 'HOXD4', 'score': 11.56}, {'connected_gene': 'HOXD3', 'score': 11.5}, {'connected_gene': 'MIR10B', 'score': 10.97}, {'connected_gene': 'HOXD-AS2', 'score': 10.83}, {'connected_gene': 'HOXD10', 'score': 10.42}, {'connected_gene': 'HOXD11', 'score': 10.41}, {'connected_gene': 'HAGLROS', 'score': 0.77}, {'connected_gene': 'ENSG00000272729', 'score': 0.44}, {'connected_gene': 'HAGLR', 'score': 0.39}]
chr2	GH02I176449	176449693	176450384	0.43	[{'connected_gene': 'HOXD4', 'score': 10.83}, {'connected_gene': 'HOXD3', 'score': 10.83}, {'connected_gene': 'HOXD8', 'score': 10.72}, {'connected_gene': 'HOXD-AS2', 'score': 10.68}, {'connected_gene': 'MIR10B', 'score': 10.31}, {'connected_gene': 'HAGLR', 'score': 9.71}, {'connected_gene': 'HOXD1', 'score': 9.71}, {'connected_gene': 'HOXD11', 'score': 9.62}, {'connected_gene': 'HOXD10', 'score': 9.62}, {'connected_gene': 'ENSG00000229434', 'score': 0.22}, {'connected_gene': 'PPIAP67', 'score': 0.14}]
chr2	GH02I176480	176480099	176480318	0.22	[{'connected_gene': 'HOXD4', 'score': 1.68}, {'connected_gene': 'ENSG00000229434', 'score': 0.31}, {'connected_gene': 'PPIAP67', 'score': 0.11}]
chr2	GH02I176561	176561611	176562011	0.42	[{'connected_gene': 'HOXD3', 'score': 10.34}, {'connected_gene': 'HAGLR', 'score': 10.16}, {'connected_gene': 'HOXD1', 'score': 10.16}, {'connected_gene': 'HOXD4', 'score': 9.94}, {'connected_gene': 'MIR10B', 'score': 9.77}, {'connected_gene': 'GC02P176590', 'score': 0.31}, {'connected_gene': 'ENSG00000236231', 'score': 0.29}]
chr2	GH02I176562	176562021	176563022	0.75	[{'connected_gene': 'HOXD3', 'score': 10.34}, {'connected_gene': 'HAGLR', 'score': 10.16}, {'connected_gene': 'HOXD1', 'score': 10.16}, {'connected_gene': 'HOXD4', 'score': 9.94}, {'connected_gene': 'MIR10B', 'score': 9.77}, {'connected_gene': 'GC02P176590', 'score': 0.31}, {'connected_gene': 'ENSG00000236231', 'score': 0.29}]
chr2	GH02I176445	176445631	176447044	0.59	[{'connected_gene': 'HOXD3', 'score': 10.68}, {'connected_gene': 'HOXD8', 'score': 10.68}, {'connected_gene': 'HOXD-AS2', 'score': 10.68}, {'connected_gene': 'HOXD4', 'score': 10.11}, {'connected_gene': 'MIR10B', 'score': 9.47}, {'connected_gene': 'ENSG00000229434', 'score': 0.21}, {'connected_gene': 'PPIAP67', 'score': 0.14}]
chr2	GH02I176503	176503294	176504900	0.67	[{'connected_gene': 'HOXD3', 'score': 10.56}, {'connected_gene': 'HOXD4', 'score': 10.15}, {'connected_gene': 'MIR10B', 'score': 10.15}, {'connected_gene': 'HAGLR', 'score': 10.01}, {'connected_gene': 'HOXD1', 'score': 10.01}, {'connected_gene': 'ENSG00000229434', 'score': 0.77}, {'connected_gene': 'PPIAP67', 'score': 0.1}]
chr2	GH02I176581	176581557	176584860	1.02	[{'connected_gene': 'HOXD3', 'score': 10.32}, {'connected_gene': 'HOXD4', 'score': 10.01}, {'connected_gene': 'MIR10B', 'score': 10.01}, {'connected_gene': 'GC02P176590', 'score': 0.44}, {'connected_gene': 'ENSG00000236231', 'score': 0.23}]
chr2	GH02I176683	176683193	176683291	0.2	[{'connected_gene': 'HOXD3', 'score': 10.35}, {'connected_gene': 'HOXD4', 'score': 10.34}, {'connected_gene': 'LOC105369143', 'score': 0.77}, {'connected_gene': 'PIR52992', 'score': 0.15}]
chr2	GH02I176552	176552179	176555202	1.32	[{'connected_gene': 'HNRNPA3', 'score': 14.81}, {'connected_gene': 'HOXD4', 'score': 11.42}, {'connected_gene': 'HOXD3', 'score': 11.42}, {'connected_gene': 'HOXD-AS2', 'score': 11.25}, {'connected_gene': 'MIR10B', 'score': 10.48}, {'connected_gene': 'HAGLR', 'score': 10.2}, {'connected_gene': 'HOXD1', 'score': 10.2}, {'connected_gene': 'HOXD13', 'score': 9.54}, {'connected_gene': 'ENSG00000236231', 'score': 0.34}, {'connected_gene': 'GC02P176590', 'score': 0.28}]
chr2	GH02I176177	176177335	176179500	0.9	[{'connected_gene': 'HAGLROS', 'score': 582.37}, {'connected_gene': 'HAGLR', 'score': 15.04}, {'connected_gene': 'HOXD1', 'score': 12.62}, {'connected_gene': 'HOXD4', 'score': 11.51}, {'connected_gene': 'HOXD3', 'score': 11.46}, {'connected_gene': 'HOXD-AS2', 'score': 10.96}, {'connected_gene': 'MIR10B', 'score': 10.41}, {'connected_gene': 'HOXD11', 'score': 9.9}, {'connected_gene': 'HOXD12', 'score': 9.89}, {'connected_gene': 'HOXD10', 'score': 9.7}, {'connected_gene': 'HOXD13', 'score': 9.4}]
chr2	GH02I176565	176565450	176566791	0.6	[{'connected_gene': 'HOXD-AS2', 'score': 10.76}, {'connected_gene': 'HOXD3', 'score': 10.76}, {'connected_gene': 'HAGLR', 'score': 10.16}, {'connected_gene': 'HOXD1', 'score': 10.16}, {'connected_gene': 'HOXD11', 'score': 10.08}, {'connected_gene': 'HOXD4', 'score': 9.93}, {'connected_gene': 'MIR10B', 'score': 9.77}, {'connected_gene': 'GC02P176590', 'score': 0.34}, {'connected_gene': 'ENSG00000236231', 'score': 0.29}]
chr2	GH02I176151	176151244	176151303	0.68	[{'connected_gene': 'GC02P176169', 'score': 550.77}, {'connected_gene': 'PIR51248', 'score': 550.77}, {'connected_gene': 'HOXD4', 'score': 550.77}, {'connected_gene': 'GC02P176168', 'score': 550.77}, {'connected_gene': 'MIR10B', 'score': 550.77}, {'connected_gene': 'ENSG00000278500', 'score': 550.77}, {'connected_gene': 'HOXD8', 'score': 6.95}, {'connected_gene': 'ENSG00000272729', 'score': 0.39}, {'connected_gene': 'HOXD3', 'score': 0.39}]