PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000490088	[[176973517, 176974086], [176983681, 176984122]]	None
ENST00000549469	[[176973604, 176974086], [176976110, 176976244], [176983681, 176983971]]	None
ENST00000249501	[[176981306, 176982306], [176983681, 176984670]]	[[176981561, 176982306], [176983681, 176983959]]
NM_002148	[[176981491, 176982306], [176983681, 176984670]]	[[176981561, 176982306], [176983681, 176983959]]

Promoter

Chrom	Start	End	Description
chr2	176973275	176973300	CAGE_peak_4_at_HOXD10_5end
chr2	176973313	176973325	CAGE_peak_8_at_HOXD10_5end
chr2	176973498	176973524	CAGE_peak_1_at_HOXD10_5end
chr2	176973528	176973535	CAGE_peak_9_at_HOXD10_5end
chr2	176973557	176973561	CAGE_peak_10_at_HOXD10_5end
chr2	176981499	176981522	CAGE_peak_2_at_HOXD10_5end
chr2	176981526	176981543	CAGE_peak_3_at_HOXD10_5end
chr2	176981546	176981557	CAGE_peak_5_at_HOXD10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I176116	176116613	176116762	0.62	[{'connected_gene': 'HOXD13', 'score': 17.52}, {'connected_gene': 'HOXD-AS2', 'score': 11.42}, {'connected_gene': 'HOXD9', 'score': 0.44}, {'connected_gene': 'HOXD10', 'score': 0.44}]
chr2	GH02I176105	176105133	176105568	0.97	[{'connected_gene': 'HOXD11', 'score': 569.68}, {'connected_gene': 'HOXD13', 'score': 7.94}, {'connected_gene': 'HOXD10', 'score': 5.88}, {'connected_gene': 'HOXD9', 'score': 3.19}, {'connected_gene': 'HOXD8', 'score': 2.9}, {'connected_gene': 'HOXD3', 'score': 1.79}]
chr2	GH02I176073	176073451	176073970	0.76	[{'connected_gene': 'HOXD11', 'score': 11.35}, {'connected_gene': 'HOXD12', 'score': 11.34}, {'connected_gene': 'HOXD10', 'score': 11.34}, {'connected_gene': 'HOXD1', 'score': 10.14}, {'connected_gene': 'HAGLR', 'score': 10.13}, {'connected_gene': 'LNPK', 'score': 4.46}, {'connected_gene': 'EVX2', 'score': 0.39}, {'connected_gene': 'GC02M176020', 'score': 0.23}]
chr2	GH02I176107	176107231	176107290	1.12	[{'connected_gene': 'HOXD11', 'score': 550.77}, {'connected_gene': 'HOXD10', 'score': 550.77}]
chr2	GH02I176121	176121933	176123262	1.06	[{'connected_gene': 'HOXD9', 'score': 557.2}, {'connected_gene': 'HAGLR', 'score': 7.68}, {'connected_gene': 'HOXD10', 'score': 0.39}, {'connected_gene': 'HOXD-AS2', 'score': 0.39}]
chr2	GH02I176544	176544514	176546214	0.31	[{'connected_gene': 'HOXD4', 'score': 10.95}, {'connected_gene': 'MIR10B', 'score': 10.95}, {'connected_gene': 'HOXD3', 'score': 10.95}, {'connected_gene': 'HAGLR', 'score': 10.78}, {'connected_gene': 'HOXD1', 'score': 10.78}, {'connected_gene': 'HOXD10', 'score': 10.21}, {'connected_gene': 'HOXD11', 'score': 10.21}, {'connected_gene': 'ENSG00000236231', 'score': 0.39}, {'connected_gene': 'GC02P176590', 'score': 0.25}]
chr2	GH02I176455	176455013	176456765	0.9	[{'connected_gene': 'HOXD4', 'score': 11.1}, {'connected_gene': 'MIR10B', 'score': 11.1}, {'connected_gene': 'HOXD3', 'score': 11.1}, {'connected_gene': 'HOXD11', 'score': 10.04}, {'connected_gene': 'HOXD10', 'score': 10.04}, {'connected_gene': 'ENSG00000229434', 'score': 0.23}, {'connected_gene': 'PPIAP67', 'score': 0.13}]
chr2	GH02I176175	176175133	176175282	0.6	[{'connected_gene': 'HOXD4', 'score': 11.56}, {'connected_gene': 'HOXD3', 'score': 11.5}, {'connected_gene': 'MIR10B', 'score': 10.97}, {'connected_gene': 'HOXD-AS2', 'score': 10.83}, {'connected_gene': 'HOXD10', 'score': 10.42}, {'connected_gene': 'HOXD11', 'score': 10.41}, {'connected_gene': 'HAGLROS', 'score': 0.77}, {'connected_gene': 'ENSG00000272729', 'score': 0.44}, {'connected_gene': 'HAGLR', 'score': 0.39}]
chr2	GH02I176449	176449693	176450384	0.43	[{'connected_gene': 'HOXD4', 'score': 10.83}, {'connected_gene': 'HOXD3', 'score': 10.83}, {'connected_gene': 'HOXD8', 'score': 10.72}, {'connected_gene': 'HOXD-AS2', 'score': 10.68}, {'connected_gene': 'MIR10B', 'score': 10.31}, {'connected_gene': 'HAGLR', 'score': 9.71}, {'connected_gene': 'HOXD1', 'score': 9.71}, {'connected_gene': 'HOXD11', 'score': 9.62}, {'connected_gene': 'HOXD10', 'score': 9.62}, {'connected_gene': 'ENSG00000229434', 'score': 0.22}, {'connected_gene': 'PPIAP67', 'score': 0.14}]
chr2	GH02I176621	176621357	176621762	0.44	[{'connected_gene': 'HOXD3', 'score': 22.48}, {'connected_gene': 'HOXD10', 'score': 10.2}, {'connected_gene': 'HOXD11', 'score': 10.2}, {'connected_gene': 'HAGLR', 'score': 9.63}, {'connected_gene': 'HOXD1', 'score': 9.63}, {'connected_gene': 'LOC105373754', 'score': 0.44}, {'connected_gene': 'LINC01117', 'score': 0.37}]
chr2	GH02I176177	176177335	176179500	0.9	[{'connected_gene': 'HAGLROS', 'score': 582.37}, {'connected_gene': 'HAGLR', 'score': 15.04}, {'connected_gene': 'HOXD1', 'score': 12.62}, {'connected_gene': 'HOXD4', 'score': 11.51}, {'connected_gene': 'HOXD3', 'score': 11.46}, {'connected_gene': 'HOXD-AS2', 'score': 10.96}, {'connected_gene': 'MIR10B', 'score': 10.41}, {'connected_gene': 'HOXD11', 'score': 9.9}, {'connected_gene': 'HOXD12', 'score': 9.89}, {'connected_gene': 'HOXD10', 'score': 9.7}, {'connected_gene': 'HOXD13', 'score': 9.4}]
chr2	GH02I176159	176159703	176162723	0.54	[{'connected_gene': 'HAGLROS', 'score': 29.24}, {'connected_gene': 'HAGLR', 'score': 27.29}, {'connected_gene': 'HOXD1', 'score': 24.54}, {'connected_gene': 'HOXD-AS2', 'score': 11.78}, {'connected_gene': 'HOXD9', 'score': 11.72}, {'connected_gene': 'HOXD3', 'score': 11.63}, {'connected_gene': 'HOXD8', 'score': 11.59}, {'connected_gene': 'HOXD10', 'score': 11.41}, {'connected_gene': 'HOXD11', 'score': 11.4}, {'connected_gene': 'HOXD13', 'score': 11.27}, {'connected_gene': 'HOXD12', 'score': 10.98}, {'connected_gene': 'ENSG00000272729', 'score': 0.77}, {'connected_gene': 'ENSG00000278500', 'score': 0.39}]
chr2	GH02I176171	176171373	176171522	0.49	[{'connected_gene': 'HAGLROS', 'score': 33.37}, {'connected_gene': 'HOXD-AS2', 'score': 11.27}, {'connected_gene': 'HOXD3', 'score': 11.27}, {'connected_gene': 'HOXD10', 'score': 11.01}, {'connected_gene': 'HOXD11', 'score': 11.01}, {'connected_gene': 'HOXD8', 'score': 10.92}, {'connected_gene': 'HOXD12', 'score': 10.77}, {'connected_gene': 'HOXD9', 'score': 10.56}, {'connected_gene': 'HOXD13', 'score': 10.49}, {'connected_gene': 'ENSG00000272729', 'score': 0.44}, {'connected_gene': 'ENSG00000278500', 'score': 0.34}]
chr2	GH02I176173	176172853	176173002	0.75	[{'connected_gene': 'HOXD-AS2', 'score': 11.25}, {'connected_gene': 'HOXD3', 'score': 11.25}, {'connected_gene': 'HOXD10', 'score': 11.01}, {'connected_gene': 'HOXD11', 'score': 11.01}, {'connected_gene': 'HOXD8', 'score': 10.92}, {'connected_gene': 'HOXD12', 'score': 10.77}, {'connected_gene': 'HOXD9', 'score': 10.55}, {'connected_gene': 'HOXD13', 'score': 10.48}, {'connected_gene': 'HAGLROS', 'score': 0.77}, {'connected_gene': 'ENSG00000272729', 'score': 0.44}, {'connected_gene': 'ENSG00000278500', 'score': 0.34}]
chr2	GH02I176172	176171813	176171962	0.49	[{'connected_gene': 'HOXD-AS2', 'score': 11.27}, {'connected_gene': 'HOXD3', 'score': 11.25}, {'connected_gene': 'HOXD10', 'score': 11.01}, {'connected_gene': 'HOXD11', 'score': 11.01}, {'connected_gene': 'HOXD8', 'score': 10.92}, {'connected_gene': 'HOXD12', 'score': 10.77}, {'connected_gene': 'HOXD9', 'score': 10.56}, {'connected_gene': 'HOXD13', 'score': 10.49}, {'connected_gene': 'ENSG00000272729', 'score': 0.44}, {'connected_gene': 'HAGLROS', 'score': 0.44}, {'connected_gene': 'ENSG00000278500', 'score': 0.34}]