PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000378688	[[47405684, 47409774], [47466524, 47466725], [47469629, 47470173]]	[[47408971, 47409774], [47466524, 47466725], [47469629, 47470041]]
ENST00000542664	[[47407512, 47409774], [47466524, 47466725], [47469629, 47470369], [47470808, 47471169]]	[[47408971, 47409774], [47466524, 47466725], [47469629, 47470041]]
ENST00000543956	[[47407512, 47409774], [47466524, 47466725], [47470808, 47471169]]	[[47408971, 47409774], [47466524, 47466725], [47470808, 47470968]]
NM_000621	[[47405676, 47409774], [47466524, 47466725], [47469629, 47470369], [47470808, 47471211]]	[[47408971, 47409774], [47466524, 47466725], [47469629, 47470041]]
NM_001165947	[[47405676, 47409774], [47466524, 47466725], [47470808, 47471211]]	[[47408971, 47409774], [47466524, 47466725], [47470808, 47470968]]

Promoter

Chrom	Start	End	Description
chr13	47470920	47470948	CAGE_peak_4_at_HTR2A_5end
chr13	47470960	47470980	CAGE_peak_7_at_HTR2A_5end
chr13	47470984	47471003	CAGE_peak_3_at_HTR2A_5end
chr13	47471006	47471041	CAGE_peak_2_at_HTR2A_5end
chr13	47471045	47471055	CAGE_peak_10_at_HTR2A_5end
chr13	47471078	47471089	CAGE_peak_9_at_HTR2A_5end
chr13	47471104	47471126	CAGE_peak_6_at_HTR2A_5end
chr13	47471139	47471152	CAGE_peak_5_at_HTR2A_5end
chr13	47471155	47471214	CAGE_peak_1_at_HTR2A_5end
chr13	47471216	47471226	CAGE_peak_8_at_HTR2A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I047437	47437546	47437675	0.31	[{'connected_gene': 'HTR2A', 'score': 10.4}, {'connected_gene': 'PIR47169', 'score': 0.44}, {'connected_gene': 'RN7SL700P', 'score': 0.34}]
chr13	GH13I047497	47497747	47500957	1.13	[{'connected_gene': 'HTR2A', 'score': 7.17}, {'connected_gene': 'GC13P047505', 'score': 0.44}, {'connected_gene': 'RN7SL700P', 'score': 0.26}]
chr13	GH13I047484	47484445	47485099	0.46	[{'connected_gene': 'HTR2A', 'score': 6.73}, {'connected_gene': 'GC13P047505', 'score': 0.34}, {'connected_gene': 'RN7SL700P', 'score': 0.31}]
chr13	GH13I046961	46961800	46962001	0.83	[{'connected_gene': 'HTR2A', 'score': 11.59}, {'connected_gene': 'GC13M046913', 'score': 0.25}, {'connected_gene': 'LOC105370195', 'score': 0.06}]
chr13	GH13I046982	46982878	46984648	1.01	[{'connected_gene': 'HTR2A', 'score': 10.45}, {'connected_gene': 'GC13M046913', 'score': 0.2}, {'connected_gene': 'LOC105370195', 'score': 0.06}]
chr13	GH13I046962	46962201	46962687	0.43	[{'connected_gene': 'HTR2A', 'score': 11.58}, {'connected_gene': 'GC13M046913', 'score': 0.25}, {'connected_gene': 'LOC105370195', 'score': 0.06}]
chr13	GH13I046946	46946754	46948542	0.31	[{'connected_gene': 'HTR2A', 'score': 10.58}, {'connected_gene': 'GC13M046913', 'score': 0.29}, {'connected_gene': 'LOC105370195', 'score': 0.06}]
chr13	GH13I046865	46865433	46867081	0.76	[{'connected_gene': 'HTR2A', 'score': 10.93}, {'connected_gene': 'HTR2A-AS1', 'score': 0.39}, {'connected_gene': 'GC13M046892', 'score': 0.31}]
chr13	GH13I046866	46865226	46865355	0.2	[{'connected_gene': 'HTR2A', 'score': 16.51}, {'connected_gene': 'HTR2A-AS1', 'score': 0.39}, {'connected_gene': 'GC13M046892', 'score': 0.31}]
chr13	GH13I047775	47774226	47774375	0.66	[{'connected_gene': 'HTR2A', 'score': 10.65}, {'connected_gene': 'RPL27AP8', 'score': 0.44}, {'connected_gene': 'ENSG00000228573', 'score': 0.21}]
chr13	GH13I046896	46896600	46897201	1.11	[{'connected_gene': 'HTR2A', 'score': 550.77}, {'connected_gene': 'GC13M046896', 'score': 550.77}, {'connected_gene': 'GC13M046895', 'score': 550.77}]
chr13	GH13I047332	47332226	47332375	0.2	[{'connected_gene': 'HTR2A', 'score': 8.7}, {'connected_gene': 'GC13P047320', 'score': 0.39}, {'connected_gene': 'GC13P047412', 'score': 0.18}]
chr13	GH13I047774	47774000	47774201	0.89	[{'connected_gene': 'MED4', 'score': 14.42}, {'connected_gene': 'HTR2A', 'score': 10.65}, {'connected_gene': 'LINC00562', 'score': 10.14}, {'connected_gene': 'RPL27AP8', 'score': 0.44}, {'connected_gene': 'ENSG00000228573', 'score': 0.21}]
chr13	GH13I046795	46795965	46798510	2.04	[{'connected_gene': 'ESD', 'score': 557.36}, {'connected_gene': 'HTR2A', 'score': 6.19}, {'connected_gene': 'GC13P046789', 'score': 0.44}]
chr13	GH13I046759	46759966	46760115	0.62	[{'connected_gene': 'ESD', 'score': 11.1}, {'connected_gene': 'LRCH1', 'score': 10.17}, {'connected_gene': 'HTR2A', 'score': 9.17}, {'connected_gene': 'GC13P046789', 'score': 0.31}, {'connected_gene': 'ENSG00000278462', 'score': 0.26}]
chr13	GH13I046757	46757086	46757235	0.49	[{'connected_gene': 'ESD', 'score': 11.08}, {'connected_gene': 'LRCH1', 'score': 10.17}, {'connected_gene': 'HTR2A', 'score': 9.17}, {'connected_gene': 'GC13P046789', 'score': 0.29}, {'connected_gene': 'ENSG00000278462', 'score': 0.28}]
chr13	GH13I046893	46893601	46894885	0.91	[{'connected_gene': 'GC13M046896', 'score': 550.77}, {'connected_gene': 'GC13M046894', 'score': 550.77}, {'connected_gene': 'GC13M046893', 'score': 550.77}, {'connected_gene': 'GC13M046895', 'score': 550.77}, {'connected_gene': 'GC13P046892', 'score': 550.77}, {'connected_gene': 'GC13M046892', 'score': 550.77}, {'connected_gene': 'HTR2A', 'score': 6.97}]