PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000382071	[[24881303, 24881366], [24890119, 24890307], [24892955, 24893018], [24895133, 24896673]]	[[24890141, 24890307], [24892955, 24893018], [24895133, 24895906]]
ENST00000332018	[[24883715, 24883754], [24890119, 24890307], [24892955, 24893018], [24895133, 24896673]]	[[24890141, 24890307], [24892955, 24893018], [24895133, 24895906]]
NM_001303138	[[24881303, 24881366], [24890119, 24890307], [24892955, 24893018], [24895133, 24896669]]	[[24890141, 24890307], [24892955, 24893018], [24895133, 24895906]]
NM_178540	[[24883715, 24883754], [24890119, 24890307], [24892955, 24893018], [24895133, 24896669]]	[[24890141, 24890307], [24892955, 24893018], [24895133, 24895906]]
NM_001303137	[[24883715, 24883754], [24889031, 24889115], [24890119, 24890307], [24892955, 24893018], [24895133, 24896669]]	[[24890141, 24890307], [24892955, 24893018], [24895133, 24895906]]

Promoter

Chrom	Start	End	Description
chr13	24553815	24553826	CAGE_peak_19_at_SPATA13_5end,CAGE_peak_4_at_C1QTNF9_5end
chr13	24883703	24883718	CAGE_peak_2_at_C1QTNF9_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I023762	23762369	23764047	0.2	[{'connected_gene': 'TNFRSF19', 'score': 9.4}, {'connected_gene': 'C1QTNF9', 'score': 7.12}, {'connected_gene': 'MIPEP', 'score': 6.81}, {'connected_gene': 'MTCO3P2', 'score': 0.77}, {'connected_gene': 'PIR57166', 'score': 0.25}]
chr13	GH13I023769	23769183	23772824	0.96	[{'connected_gene': 'MIPEP', 'score': 10.5}, {'connected_gene': 'TNFRSF19', 'score': 9.62}, {'connected_gene': 'C1QTNF9', 'score': 4.75}, {'connected_gene': 'MTCO3P2', 'score': 0.77}, {'connected_gene': 'PCOTH', 'score': 0.13}]
chr13	GH13I023887	23887795	23890292	2.03	[{'connected_gene': 'MIPEP', 'score': 562.0}, {'connected_gene': 'PCOTH', 'score': 550.77}, {'connected_gene': 'C1QTNF9', 'score': 43.24}]
chr13	GH13I023749	23749870	23755311	1.19	[{'connected_gene': 'MIPEP', 'score': 9.38}, {'connected_gene': 'C1QTNF9', 'score': 4.77}, {'connected_gene': 'MTCO3P2', 'score': 0.39}, {'connected_gene': 'PIR57166', 'score': 0.28}]
chr13	GH13I023903	23903201	23903800	0.31	[{'connected_gene': 'C1QTNF9B', 'score': 550.77}, {'connected_gene': 'C1QTNF9', 'score': 15.23}, {'connected_gene': 'MIPEP', 'score': 9.63}, {'connected_gene': 'PIR57853', 'score': 0.26}]
chr13	GH13I023805	23805792	23808699	0.95	[{'connected_gene': 'C1QTNF9', 'score': 27.18}, {'connected_gene': 'TNFRSF19', 'score': 9.14}, {'connected_gene': 'MIPEP', 'score': 8.74}, {'connected_gene': 'MTCO3P2', 'score': 0.26}, {'connected_gene': 'PCOTH', 'score': 0.18}]
chr13	GH13I023848	23848162	23849490	0.31	[{'connected_gene': 'C1QTNF9', 'score': 28.33}, {'connected_gene': 'MIPEP', 'score': 11.67}, {'connected_gene': 'TNFRSF19', 'score': 9.96}, {'connected_gene': 'PCOTH', 'score': 0.26}, {'connected_gene': 'MTCO3P2', 'score': 0.18}]
chr13	GH13I023866	23866304	23869579	1.14	[{'connected_gene': 'C1QTNF9', 'score': 39.85}, {'connected_gene': 'MIPEP', 'score': 21.1}, {'connected_gene': 'PCOTH', 'score': 11.96}, {'connected_gene': 'C1QTNF9B', 'score': 11.91}, {'connected_gene': 'TNFRSF19', 'score': 10.34}, {'connected_gene': 'MTCO3P2', 'score': 0.15}]
chr13	GH13I023899	23899702	23900000	0.74	[{'connected_gene': 'C1QTNF9', 'score': 14.37}, {'connected_gene': 'MIPEP', 'score': 10.34}, {'connected_gene': 'C1QTNF9B', 'score': 0.77}]
chr13	GH13I023897	23897506	23899369	0.38	[{'connected_gene': 'C1QTNF9', 'score': 38.58}, {'connected_gene': 'MIPEP', 'score': 10.6}, {'connected_gene': 'C1QTNF9B', 'score': 0.77}]
chr13	GH13I023722	23722382	23725476	0.63	[{'connected_gene': 'C1QTNF9', 'score': 19.01}, {'connected_gene': 'MIPEP', 'score': 5.37}, {'connected_gene': 'LOC105370113', 'score': 0.44}, {'connected_gene': 'PIR57166', 'score': 0.44}, {'connected_gene': 'MTCO3P2', 'score': 0.26}]
chr13	GH13I023719	23719126	23719779	0.43	[{'connected_gene': 'C1QTNF9', 'score': 6.68}, {'connected_gene': 'MIPEP', 'score': 4.96}, {'connected_gene': 'LOC105370113', 'score': 0.77}, {'connected_gene': 'PIR57166', 'score': 0.77}, {'connected_gene': 'MTCO3P2', 'score': 0.25}]
chr13	GH13I023792	23792629	23797485	1.18	[{'connected_gene': 'C1QTNF9', 'score': 26.39}, {'connected_gene': 'MIPEP', 'score': 8.97}, {'connected_gene': 'MTCO3P2', 'score': 0.31}, {'connected_gene': 'PCOTH', 'score': 0.16}]
chr13	GH13I023799	23799132	23801644	1.04	[{'connected_gene': 'C1QTNF9', 'score': 21.57}, {'connected_gene': 'MIPEP', 'score': 8.56}, {'connected_gene': 'MTCO3P2', 'score': 0.29}, {'connected_gene': 'PCOTH', 'score': 0.17}]
chr13	GH13I023776	23776705	23779221	1.04	[{'connected_gene': 'C1QTNF9', 'score': 24.43}, {'connected_gene': 'MIPEP', 'score': 10.27}, {'connected_gene': 'MTCO3P2', 'score': 0.39}, {'connected_gene': 'PCOTH', 'score': 0.14}]
chr13	GH13I024309	24309531	24309590	0.5	[{'connected_gene': 'C1QTNF9', 'score': 550.77}, {'connected_gene': 'C1QTNF9-AS1', 'score': 0.39}, {'connected_gene': 'ENSG00000273167', 'score': 0.05}]
chr13	GH13I024282	24282363	24282512	0.51	[{'connected_gene': 'C1QTNF9', 'score': 0.34}, {'connected_gene': 'SPATA13-AS1', 'score': 0.31}, {'connected_gene': 'SPATA13', 'score': 0.06}, {'connected_gene': 'ENSG00000273167', 'score': 0.06}]
chr13	GH13I023810	23810581	23812636	0.63	[{'connected_gene': 'C1QTNF9', 'score': 26.64}, {'connected_gene': 'MTCO3P2', 'score': 0.25}, {'connected_gene': 'MIPEP', 'score': 0.18}, {'connected_gene': 'PCOTH', 'score': 0.18}]
chr13	GH13I024348	24348293	24349906	0.52	[{'connected_gene': 'C1QTNF9', 'score': 13.6}, {'connected_gene': 'LINC00566', 'score': 0.37}, {'connected_gene': 'CYCSP33', 'score': 0.23}]
chr13	GH13I023447	23447587	23451347	0.77	[{'connected_gene': 'C1QTNF9', 'score': 4.83}, {'connected_gene': 'LINC00327', 'score': 0.37}, {'connected_gene': 'SACS', 'score': 0.37}]
chr13	GH13I024299	24299794	24301251	0.31	[{'connected_gene': 'SPATA13', 'score': 7.53}, {'connected_gene': 'C1QTNF9', 'score': 0.44}, {'connected_gene': 'SPATA13-AS1', 'score': 0.25}, {'connected_gene': 'ENSG00000273167', 'score': 0.05}]
chr13	GH13I024279	24279002	24281648	1.13	[{'connected_gene': 'SPATA13', 'score': 6.43}, {'connected_gene': 'PARP4', 'score': 2.22}, {'connected_gene': 'C1QTNF9', 'score': 0.31}, {'connected_gene': 'SPATA13-AS1', 'score': 0.31}, {'connected_gene': 'ENSG00000273167', 'score': 0.06}]
chr13	GH13I024293	24293295	24295205	0.2	[{'connected_gene': 'SPATA13', 'score': 18.71}, {'connected_gene': 'SPATA13-AS1', 'score': 11.6}, {'connected_gene': 'TPTE2P6', 'score': 5.28}, {'connected_gene': 'C1QTNF9', 'score': 0.39}, {'connected_gene': 'ENSG00000273167', 'score': 0.06}]
chr13	GH13I024269	24269875	24277172	2.49	[{'connected_gene': 'SPATA13', 'score': 556.02}, {'connected_gene': 'IPO7P2', 'score': 10.49}, {'connected_gene': 'TPTE2P6', 'score': 10.15}, {'connected_gene': 'PARP4', 'score': 3.25}, {'connected_gene': 'SPATA13-AS1', 'score': 0.37}, {'connected_gene': 'C1QTNF9', 'score': 0.29}, {'connected_gene': 'ENSG00000273167', 'score': 0.06}]
chr13	GH13I024262	24262653	24268932	1.24	[{'connected_gene': 'PARP4', 'score': 10.7}, {'connected_gene': 'SPATA13-AS1', 'score': 0.39}, {'connected_gene': 'C1QTNF9', 'score': 0.26}, {'connected_gene': 'SPATA13', 'score': 0.06}, {'connected_gene': 'ENSG00000273167', 'score': 0.06}]
chr13	GH13I024328	24328401	24328799	0.2	[{'connected_gene': 'NUS1P3', 'score': 550.77}, {'connected_gene': 'GC13P024328', 'score': 550.77}, {'connected_gene': 'C1QTNF9', 'score': 15.94}, {'connected_gene': 'MTMR6', 'score': 4.89}]
chr13	GH13I024502	24502307	24503731	0.82	[{'connected_gene': 'LOC105370117', 'score': 550.77}, {'connected_gene': 'PARP4', 'score': 11.28}, {'connected_gene': 'C1QTNF9', 'score': 5.2}, {'connected_gene': 'TPTE2P6', 'score': 0.16}]
chr13	GH13I024277	24277355	24278592	0.2	[{'connected_gene': 'SPATA13-AS1', 'score': 0.34}, {'connected_gene': 'C1QTNF9', 'score': 0.31}, {'connected_gene': 'SPATA13', 'score': 0.06}, {'connected_gene': 'ENSG00000273167', 'score': 0.06}]
chr13	GH13I024289	24289083	24289132	0.4	[{'connected_gene': 'SPATA13-AS1', 'score': 11.27}, {'connected_gene': 'SPATA13', 'score': 11.04}, {'connected_gene': 'C1QTNF9', 'score': 0.37}, {'connected_gene': 'ENSG00000273167', 'score': 0.06}]
chr13	GH13I024258	24258526	24259612	0.4	[{'connected_gene': 'MIR2276', 'score': 10.49}, {'connected_gene': 'SPATA13', 'score': 10.4}, {'connected_gene': 'SPATA13-AS1', 'score': 0.77}, {'connected_gene': 'C1QTNF9', 'score': 0.25}, {'connected_gene': 'ENSG00000273167', 'score': 0.06}]
chr13	GH13I024260	24260818	24261935	0.88	[{'connected_gene': 'MIR2276', 'score': 10.49}, {'connected_gene': 'SPATA13', 'score': 10.4}, {'connected_gene': 'SPATA13-AS1', 'score': 0.44}, {'connected_gene': 'C1QTNF9', 'score': 0.25}, {'connected_gene': 'ENSG00000273167', 'score': 0.06}]
chr13	GH13I024259	24259813	24260589	0.2	[{'connected_gene': 'MIR2276', 'score': 10.49}, {'connected_gene': 'SPATA13', 'score': 10.4}, {'connected_gene': 'SPATA13-AS1', 'score': 0.44}, {'connected_gene': 'C1QTNF9', 'score': 0.25}, {'connected_gene': 'ENSG00000273167', 'score': 0.06}]