PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000261980	[[74706174, 74706634], [74707884, 74707969], [74711867, 74711991], [74726304, 74726485], [74727296, 74729441]]	[[74706264, 74706634], [74707884, 74707969], [74711867, 74711991], [74726304, 74726485], [74727296, 74727622]]
NM_182894	[[74706174, 74706634], [74707884, 74707969], [74711867, 74711991], [74726304, 74726485], [74727296, 74729441]]	[[74706264, 74706634], [74707884, 74707969], [74711867, 74711991], [74726304, 74726485], [74727296, 74727622]]

Promoter

Chrom	Start	End	Description
chr14	74706150	74706155	CAGE_peak_1_at_VSX2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I074251	74251201	74252027	1.04	[{'connected_gene': 'ELMSAN1', 'score': 18.03}, {'connected_gene': 'ZNF410', 'score': 16.58}, {'connected_gene': 'NUMB', 'score': 14.8}, {'connected_gene': 'NEK9', 'score': 11.55}, {'connected_gene': 'ABCD4', 'score': 10.89}, {'connected_gene': 'ENSG00000258559', 'score': 10.65}, {'connected_gene': 'FCF1', 'score': 10.51}, {'connected_gene': 'SYNDIG1L', 'score': 9.56}, {'connected_gene': 'VSX2', 'score': 6.67}, {'connected_gene': 'ALDH6A1', 'score': 5.18}, {'connected_gene': 'GC14M074212', 'score': 0.07}]
chr14	GH14I074387	74387546	74396660	0.52	[{'connected_gene': 'SYNDIG1L', 'score': 11.62}, {'connected_gene': 'ABCD4', 'score': 10.97}, {'connected_gene': 'VSX2', 'score': 10.32}, {'connected_gene': 'LTBP2', 'score': 10.05}, {'connected_gene': 'ENSG00000259005', 'score': 4.81}, {'connected_gene': 'ENSG00000270000', 'score': 4.57}, {'connected_gene': 'LIN52', 'score': 4.13}, {'connected_gene': 'RPS2P2', 'score': 0.39}, {'connected_gene': 'GC14M074406', 'score': 0.37}, {'connected_gene': 'GC14M074212', 'score': 0.13}]
chr14	GH14I074239	74239029	74241912	1.02	[{'connected_gene': 'VSX2', 'score': 558.64}, {'connected_gene': 'ABCD4', 'score': 10.41}, {'connected_gene': 'SYNDIG1L', 'score': 9.64}, {'connected_gene': 'ENSG00000258559', 'score': 6.09}, {'connected_gene': 'GC14M074212', 'score': 0.06}]
chr14	GH14I074256	74256977	74259012	0.9	[{'connected_gene': 'VSX2', 'score': 7.13}, {'connected_gene': 'ALDH6A1', 'score': 6.62}, {'connected_gene': 'ENSG00000258559', 'score': 6.02}, {'connected_gene': 'GC14M074212', 'score': 0.07}]
chr14	GH14I074155	74155219	74155521	0.51	[{'connected_gene': 'VSX2', 'score': 11.26}, {'connected_gene': 'LOC105370563', 'score': 0.39}, {'connected_gene': 'RN7SL530P', 'score': 0.37}, {'connected_gene': 'LIN52', 'score': 0.19}]
chr14	GH14I074217	74217564	74218428	1	[{'connected_gene': 'LOC105370564', 'score': 550.77}, {'connected_gene': 'LIN52', 'score': 10.69}, {'connected_gene': 'ALDH6A1', 'score': 10.69}, {'connected_gene': 'SYNDIG1L', 'score': 9.3}, {'connected_gene': 'PTGR2', 'score': 6.12}, {'connected_gene': 'FAM161B', 'score': 5.8}, {'connected_gene': 'ACOT2', 'score': 5.15}, {'connected_gene': 'VSX2', 'score': 0.34}, {'connected_gene': 'GC14M074212', 'score': 0.06}]
chr14	GH14I074274	74274970	74275850	0.86	[{'connected_gene': 'ENSG00000258559', 'score': 7.2}, {'connected_gene': 'ABCD4', 'score': 4.98}, {'connected_gene': 'FCF1', 'score': 1.23}, {'connected_gene': 'VSX2', 'score': 0.28}, {'connected_gene': 'GC14M074212', 'score': 0.07}]